Creation of an albino squid line by CRISPR-Cas9 and its application for in vivo functional imaging of neural activity

Authors: Ahuja, Namrata, Hwaun, Ernie, Pungor, Judit R., Rafiq, Ruhina, Nemes, Sal, Sakmar, Taylor, Vogt, Miranda A., Grasse, Bret, Diaz Quiroz, Juan, Montague, Tessa G., Null, Ryan W., Dallis, Danielle N., Gavriouchkina, Daria, Marletaz, Ferdinand, Abbo, Lisa, Rokhsar, Daniel S., Niell, Cristopher M., Soltesz, Ivan, Albertin, Caroline B., Rosenthal, Joshua J.C.

Source: In Current Biology 10 July 2023 33(13):2774-2783

Analysis of the P. lividus sea urchin genome highlights contrasting trends of genomic and regulatory evolution in deuterostomes

Authors: Marlétaz, Ferdinand, Couloux, Arnaud, Poulain, Julie, Labadie, Karine, Da Silva, Corinne, Mangenot, Sophie, Noel, Benjamin, Poustka, Albert J., Dru, Philippe, Pegueroles, Cinta, Borra, Marco, Lowe, Elijah K., Lhomond, Guy, Besnardeau, Lydia, Le Gras, Stéphanie, Ye, Tao, Gavriouchkina, Daria, Russo, Roberta, Costa, Caterina, Zito, Francesca, Anello, Letizia, Nicosia, Aldo, Ragusa, Maria Antonietta, Pascual, Marta, Molina, M. Dolores, Chessel, Aline, Di Carlo, Marta, Turon, Xavier, Copley, Richard R., Exposito, Jean-Yves, Martinez, Pedro, Cavalieri, Vincenzo, Ben Tabou de Leon, Smadar, Croce, Jenifer, Oliveri, Paola, Matranga, Valeria, Di Bernardo, Maria, Morales, Julia, Cormier, Patrick, Geneviève, Anne-Marie, Aury, Jean Marc, Barbe, Valérie, Wincker, Patrick, Arnone, Maria Ina, Gache, Christian, Lepage, Thierry

Source: In Cell Genomics 12 April 2023 3(4)

De novo genome assembly and in natura epigenomics reveal salinity‐induced DNA methylation in the mangrove tree Bruguiera gymnorhiza

Authors: Miryeganeh, Matin, Marlétaz, Ferdinand, Gavriouchkina, Daria, Saze, Hidetoshi

Source: New phytologist. 233(5):2094-2110

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100140113416.0x000001&indx=1&recIds=ETOCvdc_100140113416.0x000001

Reconstruction of the Global Neural Crest Gene Regulatory Network In Vivo

Authors: Williams, Ruth M., Candido-Ferreira, Ivan, Repapi, Emmanouela, Gavriouchkina, Daria, Senanayake, Upeka, Ling, Irving T.C., Telenius, Jelena, Taylor, Stephen, Hughes, Jim, Sauka-Spengler, Tatjana

Source: In Developmental Cell 21 October 2019 51(2):255-276

From Pioneer to Repressor: Bimodal foxd3 Activity Dynamically Remodels Neural Crest Regulatory Landscape In Vivo

Authors: Lukoseviciute, Martyna, Gavriouchkina, Daria, Williams, Ruth M., Hochgreb-Hagele, Tatiana, Senanayake, Upeka, Chong-Morrison, Vanessa, Thongjuea, Supat, Repapi, Emmanouela, Mead, Adam, Sauka-Spengler, Tatjana

Source: In Developmental Cell 3 December 2018 47(5):608-628

A genome-wide assessment of the ancestral neural crest gene regulatory network

Authors: Hockman, Dorit, Chong-Morrison, Vanessa, Green, Stephen, Gavriouchkina, Daria, Candido-Ferreira, Ivan, Ling, Irving, Williams, Ruth, Amemiya, Chris, Smith, Jeramiah, Bronner, Marianne, Sauka-Spengler, Tatjana

Source: Nature communications. 10(1):1-15

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100190852947.0x000001&indx=1&recIds=ETOCvdc_100190852947.0x000001

The hagfish genome and the evolution of vertebrates.

Authors: Marlétaz, Ferdinand, Timoshevskaya, Nataliya, Timoshevskiy, Vladimir A., Parey, Elise, Simakov, Oleg, Gavriouchkina, Daria, Suzuki, Masakazu, Kubokawa, Kaoru, Brenner, Sydney, Smith, Jeramiah J., Rokhsar, Daniel S.

Source: Nature; Mar2024, Vol. 627 Issue 8005, p811-820, 10p

Biotagging of Specific Cell Populations in Zebrafish Reveals Gene Regulatory Logic Encoded in the Nuclear Transcriptome

Authors: Trinh, Le A., Chong-Morrison, Vanessa, Gavriouchkina, Daria, Hochgreb-Hägele, Tatiana, Senanayake, Upeka, Fraser, Scott E., Sauka-Spengler, Tatjana

Source: Cell reports. 19(2):425-440

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100070129350.0x000001&indx=1&recIds=ETOCvdc_100070129350.0x000001

Active nuclear transcriptome analysis reveals inflammasome-dependent mechanism for early neutrophil response to Mycobacterium marinum

Authors: Kenyon, Amy, Gavriouchkina, Daria, Zorman, Jernej, Napolitani, Giorgio, Cerundolo, Vincenzo, Sauka-Spengler, Tatjana

Source: Scientific reports. 7(1):1-14

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100174176913.0x000001&indx=1&recIds=ETOCvdc_100174176913.0x000001

Corrigendum

Authors: Miryeganeh, Matin, Marlétaz, Ferdinand, Gavriouchkina, Daria, Saze, Hidetoshi

Source: New phytologist. 234(5):1901-1902

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100149755237.0x000001&indx=1&recIds=ETOCvdc_100149755237.0x000001

Transcriptional regulation analysis reveals the complexity of metamorphosis in the Pacific oyster (Crassostrea gigas)

Authors: Xu, Fei, Deng, Shaoxi, Gavriouchkina, Daria, Zhang, Guofan

Source: Marine Life Science & Technology; 20230101, Issue: Preprints p1-11, 11p

Evidence from oyster suggests an ancient role for Pdx in regulating insulin gene expression in animals.

Authors: Xu, Fei, Marlétaz, Ferdinand, Gavriouchkina, Daria, Liu, Xiao, Sauka-Spengler, Tatjana, Zhang, Guofan, Holland, Peter W. H.

Source: Nature Communications; 5/25/2021, Vol. 12 Issue 1, p1-11, 11p

Subject Terms: CRASSOSTREA, GENE expression, HOMEOBOX genes, PACIFIC oysters, OYSTERS, INSULIN, PANCREAS

Thyrotroph Embryonic Factor Regulates Light-Induced Transcription of Repair Genes in Zebrafish Embryonic Cells.

Authors: Gavriouchkina, Daria¹, Fischer, Sabine¹, Ivacevic, Tomi¹, Stolte, Jens¹, Benes, Vladimir¹ benes@embl.de, Dekens, Marcus P. S.¹ marcus.dekens@gmail.com

Source: PLoS ONE. 2010, Vol. 5 Issue 9, p1-10. 10p.

Subject Terms: *ZEBRA danio, *EMBRYOS, *CELLS, *TRANSCRIPTION factors, *GENES, *DNA repair, *THYROTROPIN, *CIRCADIAN rhythms, *HYBRID embryos

This result is not displayed to guests.
Login for full access.

Macrophages directly contribute collagen to scar formation during zebrafish heart regeneration and mouse heart repair.

Authors: Simões, Filipa C., Cahill, Thomas J., Kenyon, Amy, Gavriouchkina, Daria, Vieira, Joaquim M., Sun, Xin, Pezzolla, Daniela, Ravaud, Christophe, Masmanian, Eva, Weinberger, Michael, Mayes, Sarah, Lemieux, Madeleine E., Barnette, Damien N., Gunadasa-Rohling, Mala, Williams, Ruth M., Greaves, David R., Trinh, Le A., Fraser, Scott E., Dallas, Sarah L., Choudhury, Robin P.

Source: Nature Communications; 1/30/2020, Vol. 11 Issue 1, p1-17, 17p

Subject Terms: CARDIAC regeneration, MYOFIBROBLASTS, MACROPHAGES, BONE regeneration, COLLAGEN, EXTRACELLULAR matrix, HEART fibrosis

This result is not displayed to guests.
Login for full access.

This result is not displayed to guests.
Login for full access.