Transcriptomic clustering of chronic lymphocytic leukemia: molecular subtypes based on Bruton’s tyrosine kinase expression levels

Authors: Gorkem Kismali, Ganiraju Manyam, Nitin Jain, Cristina Ivan, Betty Lamothe, Mary L. Ayres, LaKesla R. Iles, William G. Wierda, Varsha Gandhi

Source: Blood Cancer Journal, Vol 14, Iss 1, Pp 1-13 (2024)

Subject Terms: Neoplasms. Tumors. Oncology. Including cancer and carcinogens, RC254-282

File Description: electronic resource

Relation: https://doaj.org/toc/2044-5385

Access URL: https://doaj.org/article/07af12fd7a614f578d4eea9a3ed4fd62

Immunological biomarkers of response and resistance to treatment with cabozantinib and nivolumab in recurrent endometrial cancer

Authors: Ignacio I Wistuba, Howard Streicher, Seunghee Kim-Schulze, Stephanie Lheureux, Sacha Gnjatic, Mayte Suarez-Farinas, Manishkumar Patel, Jianjun Zhang, Cara L Haymaker, Lisa Wang, Gheath Al-Atrash, Edgar Gonzalez-Kozlova, Geoffrey Kelly, Ganiraju Manyam, Vladimir Roudko, Diane Marie Del Valle, Emir Radkevich, Xie Hui, Kevin Tuballes, Swati Atale, Benito CzinCzin, Ryan Thompson

Source: Journal for ImmunoTherapy of Cancer, Vol 13, Iss 2 (2025)

Subject Terms: Neoplasms. Tumors. Oncology. Including cancer and carcinogens, RC254-282

File Description: electronic resource

Relation: https://jitc.bmj.com/content/13/2/e010541.full; https://doaj.org/toc/2051-1426

Access URL: https://doaj.org/article/935a47da98064946a1a3ae240e413391

Molecular profiling of bladder cancer xenografts defines relevant molecular subtypes and provides a resource for biomarker discovery.

Authors: Sharada Mokkapati, Ganiraju Manyam, Alexis R. Steinmetz, Côme Tholomier, Alberto Martini, Woonyoung Choi, Bogdon Czerniak, Byron H Lee, Colin P Dinney, David J McConkey

Source: Translational Oncology, Vol 52, Iss , Pp 102269- (2025)

Subject Terms: Bladder cancer, Molecular subtypes of bladder cancer, Transcriptomic classifier, Luminal, Basal, Neoplasms. Tumors. Oncology. Including cancer and carcinogens, RC254-282

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S1936523324003954; https://doaj.org/toc/1936-5233

Access URL: https://doaj.org/article/0b4fd47b36f64f1783afca8e6101bf87

Single-cell RNA sequencing analysis identifies acute changes in the tumor microenvironment induced by interferon α gene therapy in a murine bladder cancer model

Authors: Alexis R. Steinmetz, Morgan Pierce, Alberto Martini, Come Tholomier, Ganiraju Manyam, Yan Chen, Akshay Sood, Jonathan J. Duplisea, Burles A. Johnson, Bogdan A. Czerniak, Byron H. Lee, Chinnaswamy Jagannath, Seppo Yla-Herttuala, Nigel R. Parker, David J. McConkey, Colin P. Dinney, Sharada Mokkapati

Source: Frontiers in Immunology, Vol 15 (2024)

Subject Terms: nadofaragene, gene therapy, interferon α, bladder cancer, single-cell RNA sequencing, cytokine, Immunologic diseases. Allergy, RC581-607

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fimmu.2024.1387229/full; https://doaj.org/toc/1664-3224

Access URL: https://doaj.org/article/63a622d2fe494a5898ec7dc003c1d01b

590 Clinical outcomes and translational analysis of DART S1609: the thyroid cancer cohort; PD-1+ PD-L1+ TIL correlated with favorable survival

Authors: Jianhua Zhang, Hong Chen, Cara Haymaker, Elad Sharon, Razelle Kurzrock, Young Kwang Chae, Jiexin Zhang, Jack Lee, Jianjun Zhang, Ignacio Wistuba, Megan Othus, Sarah Fenton, Cristina Rodriguez, Adedayo Onitilo, Ahmad Mattour, Igor Rybkin, Christine McLeod, Helen Chen, Christopher Ryan, Melissa Plets, Charles Blanke, Gheath Al-Atrash, Rajyalakshmi Luthra, Hye Sung Kim, Dzifa Y Duose, Liam Il-Young Chung, Sandip P Patel, Yichen Lu, Edwin Roger Parra, Lorena Isabel Gomez Bolanos, Caddie Laberiano Fernandez, Luisa Solis Soto, Ganiraju Manyam, Gabby Lopez

Source: Journal for ImmunoTherapy of Cancer, Vol 11, Iss Suppl 1 (2023)

Subject Terms: Neoplasms. Tumors. Oncology. Including cancer and carcinogens, RC254-282

File Description: electronic resource

Relation: https://doaj.org/toc/2051-1426

Access URL: https://doaj.org/article/07c970496cd1451ea6e94d54b2c67cd6

Autologous humanized mouse models to study combination and single-agent immunotherapy for colorectal cancer patient-derived xenografts

Authors: Preeti Kanikarla Marie, Alexey V. Sorokin, Lea A. Bitner, Rebecca Aden, Michael Lam, Ganiraju Manyam, Melanie N. Woods, Amanda Anderson, Anna Capasso, Natalie Fowlkes, Michael J. Overman, David G. Menter, Scott Kopetz

Source: Frontiers in Oncology, Vol 12 (2022)

Subject Terms: humanized mice, immunotherapy, colorectal cancer, pre-clinical studies, T cells, Neoplasms. Tumors. Oncology. Including cancer and carcinogens, RC254-282

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fonc.2022.994333/full; https://doaj.org/toc/2234-943X

Access URL: https://doaj.org/article/ec06ee797f544d198959a8dcc024cd38

Effective combinatorial immunotherapy for penile squamous cell carcinoma

Authors: Tianhe Huang, Xi Cheng, Jad Chahoud, Ahmed Sarhan, Pheroze Tamboli, Priya Rao, Ming Guo, Ganiraju Manyam, Li Zhang, Yu Xiang, Leng Han, Xiaoying Shang, Pingna Deng, Yanting Luo, Xuemin Lu, Shan Feng, Magaly Martinez Ferrer, Y. Alan Wang, Ronald A. DePinho, Curtis A. Pettaway, Xin Lu

Source: Nature Communications, Vol 11, Iss 1, Pp 1-15 (2020)

Subject Terms: Science

File Description: electronic resource

Relation: https://doaj.org/toc/2041-1723

Access URL: https://doaj.org/article/a75e587ee5244319a4b94f79be2430fb

Integrative Analysis of mRNA, microRNA, and Protein Correlates of Relative Cerebral Blood Volume Values in GBM Reveals the Role for Modulators of Angiogenesis and Tumor Proliferation

Authors: Arvind Rao, Ganiraju Manyam, Ganesh Rao, Rajan Jain

Source: Cancer Informatics, Vol 2016, Iss 15, Pp 29-33 (2016)

Subject Terms: Neoplasms. Tumors. Oncology. Including cancer and carcinogens, RC254-282

File Description: electronic resource

Relation: http://www.la-press.com/integrative-analysis-of-mrna-microrna-and-protein-correlates-of-relati-article-a5490; https://doaj.org/toc/1176-9351

Access URL: https://doaj.org/article/0249e723fb6f4c3f8920dae6eb8d68d6

Bayesian variable selection with graphical structure learning: Applications in integrative genomics.

Authors: Suprateek Kundu, Yichen Cheng, Minsuk Shin, Ganiraju Manyam, Bani K Mallick, Veerabhadran Baladandayuthapani

Source: PLoS ONE, Vol 13, Iss 7, p e0195070 (2018)

Subject Terms: Medicine, Science

File Description: electronic resource

Relation: https://journals.plos.org/plosone/article/file?id=10.1371/journal.pone.0195070&type=printable; https://doaj.org/toc/1932-6203

Access URL: https://doaj.org/article/95253fa6929948c39ede4e17ee05d449

Association of SMAD4 mutation with patient demographics, tumor characteristics, and clinical outcomes in colorectal cancer.

Authors: Amir Mehrvarz Sarshekeh, Shailesh Advani, Michael J Overman, Ganiraju Manyam, Bryan K Kee, David R Fogelman, Arvind Dasari, Kanwal Raghav, Eduardo Vilar, Shanequa Manuel, Imad Shureiqi, Robert A Wolff, Keyur P Patel, Raja Luthra, Kenna Shaw, Cathy Eng, Dipen M Maru, Mark J Routbort, Funda Meric-Bernstam, Scott Kopetz

Source: PLoS ONE, Vol 12, Iss 3, p e0173345 (2017)

Subject Terms: Medicine, Science

File Description: electronic resource

Relation: http://europepmc.org/articles/PMC5340382?pdf=render; https://doaj.org/toc/1932-6203

Access URL: https://doaj.org/article/bfd5486e32c44fa5ab5f0b9a3eb57fca

Proteomic Characterization and Functional Analysis of Outer Membrane Vesicles of Francisella novicidaSuggests Possible Role in Virulence and Use as a Vaccine.

Authors: Tony Pierson, Demetrios Matrakas, Yuka U. Taylor, Ganiraju Manyam, Victor N. Morozov, Weidong Zhou, Monique L. van Hoek

Source: Journal of Proteome Research; Mar2011, Vol. 10 Issue 3, p954-967, 14p