Recording provenance of workflow runs with RO-Crate

Authors: Leo, Simone, Crusoe, Michael R., Rodríguez-Navas, Laura, Sirvent, Raül, Kanitz, Alexander, De Geest, Paul, Wittner, Rudolf, Pireddu, Luca, Garijo, Daniel, Fernández, José M., Colonnelli, Iacopo, Gallo, Matej, Ohta, Tazro, Suetake, Hirotaka, Capella-Gutierrez, Salvador, de Wit, Renske, Kinoshita, Bruno P., Soiland-Reyes, Stian

Source: PLoS ONE vol. 19, iss. 9, pp. 1-35, 2024

Subject Terms: Computer Science - Digital Libraries

Access URL: http://arxiv.org/abs/2312.07852

Shedding light on the black box of a neural network used to detect prostate cancer in whole slide images by occlusion-based explainability

Authors: Gallo, Matej, Krajňanský, Vojtěch, Nenutil, Rudolf, Holub, Petr, Brázdil, Tomáš

Source: In New BIOTECHNOLOGY 25 December 2023 78:52-67

Provenance of specimen and data – A prerequisite for AI development in computational pathology

Authors: Plass, Markus, Wittner, Rudolf, Holub, Petr, Frexia, Francesca, Mascia, Cecilia, Gallo, Matej, Müller, Heimo, Geiger, Jörg

Source: In New BIOTECHNOLOGY 25 December 2023 78:22-28

Automated annotations of epithelial cells and stroma in hematoxylin–eosin‐stained whole‐slide images using cytokeratin re‐staining

Authors: Brázdil, Tomáš, Gallo, Matej, Nenutil, Rudolf, Kubanda, Andrej, Toufar, Martin, Holub, Petr

Source: Journal of pathology.Clinical research. 8(2):129-142

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100139989282.0x000001&indx=1&recIds=ETOCvdc_100139989282.0x000001

Recording provenance of workflow runs with RO-Crate.

Authors: Leo, Simone, Crusoe, Michael R., Rodríguez-Navas, Laura, Sirvent, Raül, Kanitz, Alexander, De Geest, Paul, Wittner, Rudolf, Pireddu, Luca, Garijo, Daniel, Fernández, José M., Colonnelli, Iacopo, Gallo, Matej, Ohta, Tazro, Suetake, Hirotaka, Capella-Gutierrez, Salvador, de Wit, Renske, Kinoshita, Bruno P., Soiland-Reyes, Stian

Source: PLoS ONE; 9/10/2024, Vol. 19 Issue 9, p1-35, 35p

Subject Terms: IMAGE analysis, DIGITAL learning, MACHINE learning, WORKFLOW management systems, INFORMATION sharing, DATA modeling, WORKFLOW

Lightweight Distributed Provenance Model for Complex Real–world Environments.

Authors: Wittner, Rudolf, Mascia, Cecilia, Gallo, Matej, Frexia, Francesca, Müller, Heimo, Plass, Markus, Geiger, Jörg, Holub, Petr

Source: Scientific Data; 8/17/2022, Vol. 9 Issue 1, p1-19, 19p

Subject Terms: DISTRIBUTED power generation, BIOMATERIALS, ECOLOGY, REPRODUCIBLE research