Highly sensitive and accurate detection of ALK-TKI resistance mutations by oligoribonucleotide interference-PCR (ORNi-PCR)-based methods

Authors: Tabe, Chiori, Fujita, Toshitsugu, Taima, Kageaki, Tanaka, Hisashi, Makiguchi, Tomonori, Itoga, Masamichi, Ishioka, Yoshiko, Tasaka, Sadatomo, Fujii, Hodaka

Source: In Lung Cancer November 2024 197

Real-time MBDi-RPA using methyl-CpG binding protein 2: A real-time detection method for simple and rapid estimation of CpG methylation status

Authors: Ishidoya, Mina, Fujita, Toshitsugu, Tasaka, Sadatomo, Fujii, Hodaka

Source: In Analytica Chimica Acta 8 May 2024 1302

Oligoribonucleotide-Mediated Blockade of DNA Extension by Taq DNA Polymerases Increases Specificity and Sensitivity for Detecting Single-Nucleotide Differences

Authors: Fujita, Toshitsugu, Nagata, Shoko, Fujii, Hodaka

Source: Analytical chemistry. 95(6):3442-3451

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCRN631886149&indx=1&recIds=ETOCRN631886149

GARP on hepatic stellate cells is essential for the development of liver fibrosis

Authors: Zhang, Xiaolong, Sharma, Pankaj, Maschmeyer, Patrick, Hu, Yu, Lou, Mumeng, Kim, Jessica, Fujii, Hodaka, Unutmaz, Derya, Schwabe, Robert F., Winau, Florian

Source: In Journal of Hepatology November 2023 79(5):1214-1225

Circular RNAs hsa_circ_0001438 and hsa_circ_0000417 are downregulated and upregulated, respectively, in hepatocellular carcinoma

Authors: Imanishi, Sachiko, Nagata, Shoko, Fujita, Toshitsugu, Fujii, Hodaka

Source: International journal of experimental pathology. 103(6):245-251

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100165152499.0x000001&indx=1&recIds=ETOCvdc_100165152499.0x000001

Blocking RPA-based methods for the determination of CpG methylation status and detection of gene mutations.

Authors: Ishidoya, Mina, Fujita, Toshitsugu, Fujii, Hodaka

Source: Epigenomics; Feb2025, Vol. 17 Issue 3, p141-143, 3p

Nuclear Translocation of 2-Amino-3-Ketobutyrate Coenzyme a Ligase by Cold and Osmotic Stress

Authors: Fujii, Hodaka

Source: Cell Stress & Chaperones, 2007 Jul 01. 12(2), 186-191.

Access URL: https://www.jstor.org/stable/4539764

Biochemical Analyses of Molecular Mechanisms of Regulation of Genome Functions Using the Locus-Specific Chromatin Immunoprecipitation Technologies

Authors: Fujii, Hodaka

Source: Hirosaki igaku. 69(1/4):10-18

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCRN619383939&indx=1&recIds=ETOCRN619383939

iChIP‐SILAC analysis identifies epigenetic regulators of CpG methylation of the p16^INK4A gene.

Authors: Fujita, Toshitsugu¹ (AUTHOR), Fujii, Hodaka¹ (AUTHOR) hodaka@hirosaki-u.ac.jp

Source: FEBS Letters. May2024, Vol. 598 Issue 9, p1094-1109. 16p.

Subject Terms: *TUMOR suppressor genes, *EPIGENETICS, *METHYLATION, *GENES, *MASS spectrometry

Differential Requirement of the Cytoplasmic Subregions of γ c Chain in T Cell Development and Function

Authors: Tsujino, Shiho, Di Santo, James P., Takaoka, Akinori, McKernan, Teresa L., Noguchi, Shigeru, Taya, Choji, Yonekawa, Hiromichi, Saito, Takashi, Taniguchi, Tadatsugu, Fujii, Hodaka

Source: Proceedings of the National Academy of Sciences of the United States of America, 2000 Sep 01. 97(19), 10514-10519.

Access URL: https://www.jstor.org/stable/123593

An enChIP system for the analysis of genome functions in budding yeast.

Authors: Fujii, Hodaka¹ hodaka@hirosaki-u.ac.jp, Fujita, Toshitsugu¹

Source: Biology Methods & Protocols. 2022, Vol. 7 Issue 1, p1-5. 5p.

Subject Terms: *YEAST, *CHROMATIN, *IMMUNOPRECIPITATION, *CRISPRS, *SACCHAROMYCES cerevisiae

Promoter-associated proteins of EPAS1 identified by enChIP-MS – A putative role of HDX as a negative regulator

Authors: Hamidian, Arash, Vaapil, Marica, von Stedingk, Kristoffer, Fujita, Toshitsugu, Persson, Camilla U., Eriksson, Pontus, Veerla, Srinivas, De Preter, Katleen, Speleman, Frank, Fujii, Hodaka, Påhlman, Sven, Mohlin, Sofie

Source: Biochemical and biophysical research communications. 499(2):291-298

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100085322482.0x000001&indx=1&recIds=ETOCvdc_100085322482.0x000001

An enChIP system for the analysis of bacterial genome functions

Authors: Fujita, Toshitsugu, Yuno, Miyuki, Fujii, Hodaka

Source: BMC research notes. 11(1):1-5

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100164940083.0x000001&indx=1&recIds=ETOCvdc_100164940083.0x000001

EnChIP systems using different CRISPR orthologues and epitope tags

Authors: Fujita, Toshitsugu, Yuno, Miyuki, Fujii, Hodaka

Source: BMC research notes. 11(1):1-7

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100161444855.0x000001&indx=1&recIds=ETOCvdc_100161444855.0x000001

Oligoribonucleotide interference-PCR-based methods for the sensitive and accurate detection of KRAS mutations.

Authors: Fujita, Hiroaki, Fujita, Toshitsugu, Ishido, Keinosuke, Hakamada, Kenichi, Fujii, Hodaka

Source: Biology Methods & Protocols; 2024, Vol. 9 Issue 1, p1-7, 7p

Subject Terms: RAS oncogenes, CELL-free DNA, PANCREATIC duct, PANCREATIC cancer, GENETIC mutation, CIRCULATING tumor DNA

Identification of physical interactions between genomic regions by enChIP‐Seq

Authors: Fujita, Toshitsugu, Yuno, Miyuki, Suzuki, Yutaka, Sugano, Sumio, Fujii, Hodaka

Source: Genes to cells. 22(6):506-520

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100077657290.0x000001&indx=1&recIds=ETOCvdc_100077657290.0x000001

Chapter 42 - New Directions for Epigenetics: Application of Engineered DNA-binding Molecules to Locus-specific Epigenetic Research

Authors: Fujita, Toshitsugu, Fujii, Hodaka

Source: In Handbook of Epigenetics Edition: Third Edition. 2023:843-868

SAMHD1‐mediated dNTP degradation is required for efficient DNA repair during antibody class switch recombination

Authors: Husain, Afzal, Xu, Jianliang, Fujii, Hodaka, Nakata, Mikiyo, Kobayashi, Maki, Wang, Ji‐Yang, Rehwinkel, Jan, Honjo, Tasuku, Begum, Nasim A

Source: EMBO journal. 39(15)

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100107493583.0x000001&indx=1&recIds=ETOCvdc_100107493583.0x000001

Isolation of Specific Genomic Regions and Identification of Associated Molecules by Engineered DNA-Binding Molecule-Mediated Chromatin Immunoprecipitation (enChIP) Using CRISPR

Authors: Fujita, Toshitsugu, Fujii, Hodaka

Source: Methods in molecular biology. 1288:43-52

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCRN602105603&indx=1&recIds=ETOCRN602105603

Discovery and characterization of new transcripts from RNA-seq data in mouse CD4+ T cells

Authors: Hutchins, Andrew Paul, Poulain, Stéphane, Fujii, Hodaka, Miranda-Saavedra, Diego

Source: In Genomics November 2012 100(5):303-313