CORUM in 2024: protein complexes as drug targets.

Authors: Steinkamp, Ralph, Tsitsiridis, George, Brauner, Barbara, Montrone, Corinna, Fobo, Gisela, Frishman, Goar, Avram, Sorin, Oprea, Tudor I, Ruepp, Andreas

Source: Nucleic Acids Research; 1/6/2025, Vol. 53 Issue D1, pD651-D657, 7p

Activation of HERV-K(HML-2) disrupts cortical patterning and neuronal differentiation by increasing NTRK3

Authors: Padmanabhan Nair, Vidya, Liu, Hengyuan, Ciceri, Gabriele, Jungverdorben, Johannes, Frishman, Goar, Tchieu, Jason, Cederquist, Gustav Y., Rothenaigner, Ina, Schorpp, Kenji, Klepper, Lena, Walsh, Ryan M., Kim, Tae Wan, Cornacchia, Daniela, Ruepp, Andreas, Mayer, Jens, Hadian, Kamyar, Frishman, Dmitrij, Studer, Lorenz, Vincendeau, Michelle

Source: In Cell Stem Cell 2 September 2021 28(9):1566-1581

Activation of HERV-K(HML-2) disrupts cortical patterning and neuronal differentiation by increasing NTRK3

Authors: Nair, Vidya Padmanabhan, Liu, Hengyuan, Ciceri, Gabriele, Jungverdorben, Johannes, Frishman, Goar, Tchieu, Jason, Cederquist, Gustav Y., Rothenaigner, Ina, Schorpp, Kenji, Klepper, Lena, Walsh, Ryan M., Kim, Tae Wan, Cornacchia, Daniela, Ruepp, Andreas, Mayer, Jens, Hadian, Kamyar, Frishman, Dmitrij, Studer, Lorenz, Vincendeau, Michelle

Source: Cell stem cell. 28(9):1671-1673

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100164035024.0x000001&indx=1&recIds=ETOCvdc_100164035024.0x000001

PhenoDis: a comprehensive database for phenotypic characterization of rare cardiac diseases

Authors: Adler, Angela, Kirchmeier, Pia, Reinhard, Julian, Brauner, Barbara, Dunger, Irmtraud, Fobo, Gisela, Frishman, Goar, Montrone, Corinna, Mewes, H.-Werner, Arnold, Matthias, Ruepp, Andreas

Source: Orphanet journal of rare diseases. 13(1):1-8

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100161312940.0x000001&indx=1&recIds=ETOCvdc_100161312940.0x000001

Genetic Differences in the Immediate Transcriptome Response to Stress Predict Risk-Related Brain Function and Psychiatric Disorders

Authors: Ripke, Stephan, Wray, Naomi R., Lewis, Cathryn M., Hamilton, Steven P., Weissman, Myrna M., Breen, Gerome, Byrne, Enda M., Blackwood, Douglas H.R., Boomsma, Dorret I., Cichon, Sven, Heath, Andrew C., Holsboer, Florian, Lucae, Susanne, Madden, Pamela A.F., Martin, Nicholas G., McGuffin, Peter, Muglia, Pierandrea, Noethen, Markus M., Penninx, Brenda P., Pergadia, Michele L., Potash, James B., Rietschel, Marcella, Lin, Danyu, Müller-Myhsok, Bertram, Shi, Jianxin, Steinberg, Stacy, Grabe, Hans J., Lichtenstein, Paul, Magnusson, Patrik, Perlis, Roy H., Preisig, Martin, Smoller, Jordan W., Stefansson, Kari, Uher, Rudolf, Kutalik, Zoltan, Tansey, Katherine E., Teumer, Alexander, Viktorin, Alexander, Barnes, Michael R., Bettecken, Thomas, Binder, Elisabeth B., Breuer, René, Castro, Victor M., Churchill, Susanne E., Coryell, William H., Craddock, Nick, Craig, Ian W., Czamara, Darina, De Geus, Eco J., Degenhardt, Franziska, Farmer, Anne E., Fava, Maurizio, Frank, Josef, Gainer, Vivian S., Gallagher, Patience J., Gordon, Scott D., Goryachev, Sergey, Gross, Magdalena, Guipponi, Michel, Henders, Anjali K., Herms, Stefan, Hickie, Ian B., Hoefels, Susanne, Hoogendijk, Witte, Hottenga, Jouke Jan, Iosifescu, Dan V., Ising, Marcus, Jones, Ian, Jones, Lisa, Jung-Ying, Tzeng, Knowles, James A., Kohane, Isaac S., Kohli, Martin A., Korszun, Ania, Landen, Mikael, Lawson, William B., Lewis, Glyn, MacIntyre, Donald, Maier, Wolfgang, Mattheisen, Manuel, McGrath, Patrick J., McIntosh, Andrew, McLean, Alan, Middeldorp, Christel M., Middleton, Lefkos, Montgomery, Grant M., Murphy, Shawn N., Nauck, Matthias, Nolen, Willem A., Nyholt, Dale R., O’Donovan, Michael, Oskarsson, Högni, Pedersen, Nancy, Scheftner, William A., Schulz, Andrea, Schulze, Thomas G., Shyn, Stanley I., Sigurdsson, Engilbert, Slager, Susan L., Smit, Johannes H., Stefansson, Hreinn, Steffens, Michael, Thorgeirsson, Thorgeir, Tozzi, Federica, Treutlein, Jens, Uhr, Manfred, van den Oord, Edwin J.C.G., Van Grootheest, Gerard, Völzke, Henry, Weilburg, Jeffrey B., Willemsen, Gonneke, Zitman, Frans G., Neale, Benjamin, Daly, Mark, Levinson, Douglas F., Sullivan, Patrick F., Arloth, Janine, Bogdan, Ryan, Weber, Peter, Frishman, Goar, Menke, Andreas, Wagner, Klaus V., Balsevich, Georgia, Schmidt, Mathias V., Karbalai, Nazanin, Altmann, Andre, Trümbach, Dietrich, Wurst, Wolfgang, Mehta, Divya, Klengel, Torsten, Erhardt, Angelika, Carey, Caitlin E., Conley, Emily Drabant, Ruepp, Andreas, Hariri, Ahmad R.

Source: In Neuron 3 June 2015 86(5):1189-1202

COVID‐19 Disease Map, a computational knowledge repository of virus‐host interaction mechanisms

Authors: Ostaszewski, Marek, Niarakis, Anna, Mazein, Alexander, Kuperstein, Inna, Phair, Robert, Orta‐Resendiz, Aurelio, Singh, Vidisha, Aghamiri, Sara Sadat, Acencio, Marcio Luis, Glaab, Enrico, Ruepp, Andreas, Fobo, Gisela, Montrone, Corinna, Brauner, Barbara, Frishman, Goar, Monraz Gómez, Luis Cristóbal, Somers, Julia, Hoch, Matti, Kumar Gupta, Shailendra, Scheel, Julia, Borlinghaus, Hanna, Czauderna, Tobias, Schreiber, Falk, Montagud, Arnau, Ponce de Leon, Miguel, Funahashi, Akira, Hiki, Yusuke, Hiroi, Noriko, Yamada, Takahiro G, Dräger, Andreas, Renz, Alina, Naveez, Muhammad, Bocskei, Zsolt, Messina, Francesco, Börnigen, Daniela, Fergusson, Liam, Conti, Marta, Rameil, Marius, Nakonecnij, Vanessa, Vanhoefer, Jakob, Schmiester, Leonard, Wang, Muying, Ackerman, Emily E, Shoemaker, Jason E, Zucker, Jeremy, Oxford, Kristie, Teuton, Jeremy, Kocakaya, Ebru, Summak, Gökçe Yağmur, Hanspers, Kristina, Kutmon, Martina, Coort, Susan, Eijssen, Lars, Ehrhart, Friederike, Rex, D A B, Slenter, Denise, Martens, Marvin, Pham, Nhung, Haw, Robin, Jassal, Bijay, Matthews, Lisa, Orlic‐Milacic, Marija, Senff‐Ribeiro, Andrea, Rothfels, Karen, Shamovsky, Veronica, Stephan, Ralf, Sevilla, Cristoffer, Varusai, Thawfeek, Ravel, Jean‐Marie, Fraser, Rupsha, Ortseifen, Vera, Marchesi, Silvia, Gawron, Piotr, Smula, Ewa, Heirendt, Laurent, Satagopam, Venkata, Wu, Guanming, Riutta, Anders, Golebiewski, Martin, Owen, Stuart, Goble, Carole, Hu, Xiaoming, Overall, Rupert W, Maier, Dieter, Bauch, Angela, Gyori, Benjamin M, Bachman, John A, Vega, Carlos, Grouès, Valentin, Vazquez, Miguel, Porras, Pablo, Licata, Luana, Iannuccelli, Marta, Sacco, Francesca, Nesterova, Anastasia, Yuryev, Anton, de Waard, Anita, Turei, Denes, Luna, Augustin, Babur, Ozgun, Soliman, Sylvain, Valdeolivas, Alberto, Esteban‐Medina, Marina, Peña‐Chilet, Maria, Rian, Kinza, Helikar, Tomáš, Puniya, Bhanwar Lal, Modos, Dezso, Treveil, Agatha, Olbei, Marton, De Meulder, Bertrand, Ballereau, Stephane, Dugourd, Aurélien, Naldi, Aurélien, Noël, Vincent, Calzone, Laurence, Sander, Chris, Demir, Emek, Korcsmaros, Tamas, Freeman, Tom C, Augé, Franck, Beckmann, Jacques S, Hasenauer, Jan, Wolkenhauer, Olaf, Willighagen, Egon L, Pico, Alexander R, Evelo, Chris T, Gillespie, Marc E, Stein, Lincoln D, Hermjakob, Henning, D'Eustachio, Peter, Saez‐Rodriguez, Julio, Dopazo, Joaquin, Valencia, Alfonso, Kitano, Hiroaki, Barillot, Emmanuel, Auffray, Charles, Balling, Rudi, Schneider, Reinhard

Source: Molecular systems biology. 17(12)

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100143322870.0x000001&indx=1&recIds=ETOCvdc_100143322870.0x000001

COVID19 Disease Map, a computational knowledge repository of virus–host interaction mechanisms

Authors: Ostaszewski, Marek, Niarakis, Anna, Mazein, Alexander, Kuperstein, Inna, Phair, Robert, Orta‐Resendiz, Aurelio, Singh, Vidisha, Aghamiri, Sara Sadat, Acencio, Marcio Luis, Glaab, Enrico, Ruepp, Andreas, Fobo, Gisela, Montrone, Corinna, Brauner, Barbara, Frishman, Goar, Monraz Gómez, Luis Cristóbal, Somers, Julia, Hoch, Matti, Kumar Gupta, Shailendra, Scheel, Julia, Borlinghaus, Hanna, Czauderna, Tobias, Schreiber, Falk, Montagud, Arnau, Ponce de Leon, Miguel, Funahashi, Akira, Hiki, Yusuke, Hiroi, Noriko, Yamada, Takahiro G, Dräger, Andreas, Renz, Alina, Naveez, Muhammad, Bocskei, Zsolt, Messina, Francesco, Börnigen, Daniela, Fergusson, Liam, Conti, Marta, Rameil, Marius, Nakonecnij, Vanessa, Vanhoefer, Jakob, Schmiester, Leonard, Wang, Muying, Ackerman, Emily E, Shoemaker, Jason E, Zucker, Jeremy, Oxford, Kristie, Teuton, Jeremy, Kocakaya, Ebru, Summak, Gökçe Yağmur, Hanspers, Kristina, Kutmon, Martina, Coort, Susan, Eijssen, Lars, Ehrhart, Friederike, Rex, Devasahayam Arokia Balaya, Slenter, Denise, Martens, Marvin, Pham, Nhung, Haw, Robin, Jassal, Bijay, Matthews, Lisa, Orlic‐Milacic, Marija, Senff-Ribeiro, Andrea, Rothfels, Karen, Shamovsky, Veronica, Stephan, Ralf, Sevilla, Cristoffer, Varusai, Thawfeek, Ravel, Jean‐Marie, Fraser, Rupsha, Ortseifen, Vera, Marchesi, Silvia, Gawron, Piotr, Smula, Ewa, Heirendt, Laurent, Satagopam, Venkata, Wu, Guanming, Riutta, Anders, Golebiewski, Martin, Owen, Stuart, Goble, Carole, Hu, Xiaoming, Overall, Rupert W, Maier, Dieter, Bauch, Angela, Gyori, Benjamin M, Bachman, John A, Vega, Carlos, Grouès, Valentin, Vazquez, Miguel, Porras, Pablo, Licata, Luana, Iannuccelli, Marta, Sacco, Francesca, Nesterova, Anastasia, Yuryev, Anton, de Waard, Anita, Turei, Denes, Luna, Augustin, Babur, Ozgun, Soliman, Sylvain, Valdeolivas, Alberto, Esteban‐Medina, Marina, Peña‐Chilet, Maria, Rian, Kinza, Helikar, Tomáš, Puniya, Bhanwar Lal, Modos, Dezso, Treveil, Agatha, Olbei, Marton, De Meulder, Bertrand, Ballereau, Stephane, Dugourd, Aurélien, Naldi, Aurélien, Noël, Vincent, Calzone, Laurence, Sander, Chris, Demir, Emek, Korcsmaros, Tamas, Freeman, Tom C, Augé, Franck, Beckmann, Jacques S, Hasenauer, Jan, Wolkenhauer, Olaf, Willighagen, Egon L, Pico, Alexander R, Evelo, Chris T, Gillespie, Marc E, Stein, Lincoln D, Hermjakob, Henning, D'Eustachio, Peter, Saez‐Rodriguez, Julio, Dopazo, Joaquin, Valencia, Alfonso, Kitano, Hiroaki, Barillot, Emmanuel, Auffray, Charles, Balling, Rudi, Schneider, Reinhard

Source: Molecular systems biology. 17(10)

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100138993716.0x000001&indx=1&recIds=ETOCvdc_100138993716.0x000001

Author Correction: Edgetic perturbation signatures represent known and novel cancer biomarkers

Authors: Kataka, Evans, Zaucha, Jan, Frishman, Goar, Ruepp, Andreas, Frishman, Dmitrij

Source: Scientific reports. 11(1)

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100194166840.0x000001&indx=1&recIds=ETOCvdc_100194166840.0x000001

Edgetic perturbation signatures represent known and novel cancer biomarkers

Authors: Kataka, Evans, Zaucha, Jan, Frishman, Goar, Ruepp, Andreas, Frishman, Dmitrij

Source: Scientific reports. 10(1)

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100194209712.0x000001&indx=1&recIds=ETOCvdc_100194209712.0x000001

CORUM: the comprehensive resource of mammalian protein complexes–2022.

Authors: Tsitsiridis, George, Steinkamp, Ralph, Giurgiu, Madalina, Brauner, Barbara, Fobo, Gisela, Frishman, Goar, Montrone, Corinna, Ruepp, Andreas

Source: Nucleic Acids Research; 1/6/2023, Vol. 51 Issue D1, pD539-D545, 7p

Influenza A Virus Infection Reactivates Human Endogenous Retroviruses Associated with Modulation of Antiviral Immunity.

Authors: Liu, Hengyuan, Bergant, Valter, Frishman, Goar, Ruepp, Andreas, Pichlmair, Andreas, Vincendeau, Michelle, Frishman, Dmitrij

Source: Viruses (1999-4915); Jul2022, Vol. 14 Issue 7, pN.PAG-N.PAG, 19p

Subject Terms: HUMAN endogenous retroviruses, INFLUENZA A virus, INFLUENZA viruses, GENE regulatory networks, AVIAN influenza, IMMUNITY

Applying negative rule mining to improve genome annotation

Authors: Frishman Goar, Artamonova Irena I, Frishman Dmitrij

Source: BMC Bioinformatics, Vol 8, Iss 1, p 261 (2007)

Subject Terms: Computer applications to medicine. Medical informatics, R858-859.7, Biology (General), QH301-705.5

File Description: electronic resource

Relation: http://www.biomedcentral.com/1471-2105/8/261; https://doaj.org/toc/1471-2105

Access URL: https://doaj.org/article/a4de314a78b941f58390e2834610a838

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CORUM: the comprehensive resource of mammalian protein complexes—2019.

Authors: Giurgiu, Madalina, Reinhard, Julian, Brauner, Barbara, Dunger-Kaltenbach, Irmtraud, Fobo, Gisela, Frishman, Goar, Montrone, Corinna, Ruepp, Andreas

Source: Nucleic Acids Research; 1/8/2019, Vol. 47 Issue D1, pD559-D563, 5p

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