Transient colonizing microbes promote gut dysbiosis and functional impairment

Authors: Sunjae Lee, Victoria Meslier, Gholamreza Bidkhori, Fernando Garcia-Guevara, Lucie Etienne-Mesmin, Frederick Clasen, Junseok Park, Florian Plaza Oñate, Haizhuang Cai, Emmanuelle Le Chatelier, Nicolas Pons, Marcela Pereira, Maike Seifert, Fredrik Boulund, Lars Engstrand, Doheon Lee, Gordon Proctor, Adil Mardinoglu, Stéphanie Blanquet-Diot, David Moyes, Mathieu Almeida, S. Dusko Ehrlich, Mathias Uhlen, Saeed Shoaie

Source: npj Biofilms and Microbiomes, Vol 10, Iss 1, Pp 1-11 (2024)

Subject Terms: Microbial ecology, QR100-130

File Description: electronic resource

Relation: https://doaj.org/toc/2055-5008

Access URL: https://doaj.org/article/a887eb4803374d36b77690db31148648

The protective role of commensal gut microbes and their metabolites against bacterial pathogens

Authors: Liqin Cheng, Mário S. P. Correia, Shawn M. Higdon, Fabricio Romero Garcia, Ioanna Tsiara, Enrique Joffré, Åsa Sjöling, Fredrik Boulund, Elisabeth Lissa Norin, Lars Engstrand, Daniel Globisch, Juan Du

Source: Gut Microbes, Vol 16, Iss 1 (2024)

Subject Terms: Commensal bacteria, Salmonella, metabolite, adenosine, adenine, antibiotic-resistant, Diseases of the digestive system. Gastroenterology, RC799-869

File Description: electronic resource

Relation: https://doaj.org/toc/1949-0976; https://doaj.org/toc/1949-0984

Access URL: https://doaj.org/article/45ea00ecaeb54a5098c97c35ebafbe6f

Investigations of microbiota composition and neuroactive pathways in association with symptoms of stress and depression in a cohort of healthy women

Authors: Zahra Bashir, Luisa W. Hugerth, Maria Christine Krog, Stefanie Prast-Nielsen, Gabriella Edfeldt, Fredrik Boulund, Simon Rønnow Schacht, Inge Tetens, Lars Engstrand, Ina Schuppe-Koistinen, Emma Fransson, Henriette Svarre Nielsen

Source: Frontiers in Cellular and Infection Microbiology, Vol 14 (2024)

Subject Terms: depressive symptoms, diet, microbiome, tryptophan, perceived stress, shotgun sequencing, Microbiology, QR1-502

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fcimb.2024.1324794/full; https://doaj.org/toc/2235-2988

Access URL: https://doaj.org/article/905dcf49001c4ea5839f520804faadf4

Novel strain of Pseudoruminococcus massiliensis possesses traits important in gut adaptation and host-microbe interactions

Authors: Kaisa Hiippala, Imran Khan, Aki Ronkainen, Fredrik Boulund, Helena Vähä-Mäkilä, Maiju Suutarinen, Maike Seifert, Lars Engstrand, Reetta Satokari

Source: Gut Microbes, Vol 14, Iss 1 (2022)

Subject Terms: pseudoruminococcus, pili, adhesion, gut microbiota, next-generation probiotic, starch degradation, fmt, Diseases of the digestive system. Gastroenterology, RC799-869

File Description: electronic resource

Relation: https://doaj.org/toc/1949-0976; https://doaj.org/toc/1949-0984

Access URL: https://doaj.org/article/216a187f198249c0b2b6788ac1155a0a

Conjugative transfer of multi-drug resistance IncN plasmids from environmental waterborne bacteria to Escherichia coli

Authors: Jessica Guzman-Otazo, Enrique Joffré, Jorge Agramont, Nataniel Mamani, Jekaterina Jutkina, Fredrik Boulund, Yue O. O. Hu, Daphne Jumilla-Lorenz, Anne Farewell, D. G. Joakim Larsson, Carl-Fredrik Flach, Volga Iñiguez, Åsa Sjöling

Source: Frontiers in Microbiology, Vol 13 (2022)

Subject Terms: waterborne bacteria, horizontal gene transfer, multi-drug resistance, Escherichia coli, IncN plasmid, copper sulfate, Microbiology, QR1-502

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fmicb.2022.997849/full; https://doaj.org/toc/1664-302X

Access URL: https://doaj.org/article/c4c1663a62d84a0a9c4ba087578a19c7

Cohort profile: the Swedish Maternal Microbiome project (SweMaMi) – assessing the dynamic associations between the microbiome and maternal and neonatal adverse events

Authors: Lars Engstrand, Nele Brusselaers, Luisa W Hugerth, Juan Du, Emma Fransson, Unnur Gudnadottir, Eva Wiberg Itzel, Marica Hamsten, Fredrik Boulund, Alexandra Pennhag, Ina Schuppe-Koistinen

Source: BMJ Open, Vol 12, Iss 10 (2022)

Subject Terms: Medicine

File Description: electronic resource

Relation: https://bmjopen.bmj.com/content/12/10/e065825.full; https://doaj.org/toc/2044-6055

Access URL: https://doaj.org/article/b752aeb77dad40cb92cfecec19f12aad

Integration of molecular profiles in a longitudinal wellness profiling cohort

Authors: Abdellah Tebani, Anders Gummesson, Wen Zhong, Ina Schuppe Koistinen, Tadepally Lakshmikanth, Lisa M. Olsson, Fredrik Boulund, Maja Neiman, Hans Stenlund, Cecilia Hellström, Max J. Karlsson, Muhammad Arif, Tea Dodig-Crnković, Adil Mardinoglu, Sunjae Lee, Cheng Zhang, Yang Chen, Axel Olin, Jaromir Mikes, Hanna Danielsson, Kalle von Feilitzen, Per-Anders Jansson, Oskar Angerås, Mikael Huss, Sanela Kjellqvist, Jacob Odeberg, Fredrik Edfors, Valentina Tremaroli, Björn Forsström, Jochen M. Schwenk, Peter Nilsson, Thomas Moritz, Fredrik Bäckhed, Lars Engstrand, Petter Brodin, Göran Bergström, Mathias Uhlen, Linn Fagerberg

Source: Nature Communications, Vol 11, Iss 1, Pp 1-14 (2020)

Subject Terms: Science

File Description: electronic resource

Relation: https://doaj.org/toc/2041-1723

Access URL: https://doaj.org/article/4e06e15116714dfc930064890d3c4d1a

Identification and reconstruction of novel antibiotic resistance genes from metagenomes

Authors: Fanny Berglund, Tobias Österlund, Fredrik Boulund, Nachiket P. Marathe, D. G. Joakim Larsson, Erik Kristiansson

Source: Microbiome, Vol 7, Iss 1, Pp 1-14 (2019)

Subject Terms: Antibiotic resistance, Resistome, Environmental sequencing, Gene assembly, Microbiome, Beta-lactamases, Microbial ecology, QR100-130

File Description: electronic resource

Relation: http://link.springer.com/article/10.1186/s40168-019-0670-1; https://doaj.org/toc/2049-2618

Access URL: https://doaj.org/article/766b724af9364dd683b3f3b846b0d214

Dysbiosis of the Human Oral Microbiome During the Menstrual Cycle and Vulnerability to the External Exposures of Smoking and Dietary Sugar

Authors: Nagihan Bostanci, Maria Christine Krog, Luisa W. Hugerth, Zahra Bashir, Emma Fransson, Fredrik Boulund, Georgios N. Belibasakis, Kristin Wannerberger, Lars Engstrand, Henriette Svarre Nielsen, Ina Schuppe-Koistinen

Source: Frontiers in Cellular and Infection Microbiology, Vol 11 (2021)

Subject Terms: menstrual cycle, oral microbiome, saliva, hormonal contraceptives, sugar, diet, Microbiology, QR1-502

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fcimb.2021.625229/full; https://doaj.org/toc/2235-2988

Access URL: https://doaj.org/article/07a66b3aec434eec96d7912f2e2cd4a9

Assessment of In Vitro and In Silico Protocols for Sequence-Based Characterization of the Human Vaginal Microbiome

Authors: Luisa W. Hugerth, Marcela Pereira, Yinghua Zha, Maike Seifert, Vilde Kaldhusdal, Fredrik Boulund, Maria C. Krog, Zahra Bashir, Marica Hamsten, Emma Fransson, Henriette Svarre Nielsen, Ina Schuppe-Koistinen, Lars Engstrand

Source: mSphere, Vol 5, Iss 6 (2020)

Subject Terms: 16S rRNA, PCR, amplicon, human microbiome, metagenomics, molecular methods, Microbiology, QR1-502

File Description: electronic resource

Relation: https://doaj.org/toc/2379-5042

Access URL: https://doaj.org/article/615c12678b544adf99d3e8489166a079

Erratum for Hugerth et al., 'Assessment of In Vitro and In Silico Protocols for Sequence-Based Characterization of the Human Vaginal Microbiome'

Authors: Luisa W. Hugerth, Marcela Pereira, Yinghua Zha, Maike Seifert, Vilde Kaldhusdal, Fredrik Boulund, Maria C. Krog, Zahra Bashir, Marica Hamsten, Emma Fransson, Henriette Svarre Nielsen, Ina Schuppe-Koistinen, Lars Engstrand

Source: mSphere, Vol 5, Iss 6 (2020)

Subject Terms: Microbiology, QR1-502

File Description: electronic resource

Relation: https://doaj.org/toc/2379-5042

Access URL: https://doaj.org/article/4ee16e5748f64cc683c870d0d4369945

Computational discovery and functional validation of novel fluoroquinolone resistance genes in public metagenomic data sets

Authors: Fredrik Boulund, Fanny Berglund, Carl-Fredrik Flach, Johan Bengtsson-Palme, Nachiket P. Marathe, DG Joakim Larsson, Erik Kristiansson

Source: BMC Genomics, Vol 18, Iss 1, Pp 1-9 (2017)

Subject Terms: Qnr, Fluroquinolone resistance, Horizontal gene transfer, Hidden Markov models, Metagenomics, Biotechnology, TP248.13-248.65, Genetics, QH426-470

File Description: electronic resource

Relation: http://link.springer.com/article/10.1186/s12864-017-4064-0; https://doaj.org/toc/1471-2164

Access URL: https://doaj.org/article/730f71fb5a114dbeb58892292d6a603d

Proteotyping bacteria: Characterization, differentiation and identification of pneumococcus and other species within the Mitis Group of the genus Streptococcus by tandem mass spectrometry proteomics.

Authors: Roger Karlsson, Lucia Gonzales-Siles, Margarita Gomila, Antonio Busquets, Francisco Salvà-Serra, Daniel Jaén-Luchoro, Hedvig E Jakobsson, Anders Karlsson, Fredrik Boulund, Erik Kristiansson, Edward R B Moore

Source: PLoS ONE, Vol 13, Iss 12, p e0208804 (2018)

Subject Terms: Medicine, Science

File Description: electronic resource

Relation: https://doaj.org/toc/1932-6203

Access URL: https://doaj.org/article/777717d465274b80a6ef10a425a93d90

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