A genetic and microscopy toolkit for manipulating and monitoring regeneration in Macrostomum lignano

Authors: Hall, R. Nelson ^{1, ∗}, Li, Hongquan ², Chai, Chew ¹, Vermeulen, Sidney ³, Bigasin, Robin R. ¹, Song, Eun Sun ⁴, Sarkar, Souradeep R. ¹, Gibson, Jesse ¹, Prakash, Manu ¹, Fire, Andrew Z. ^{3, 5}, Wang, Bo ^{1, 6, ∗∗}

Source: In Cell Reports 26 November 2024 43(11)

Viroid-like colonists of human microbiomes

Authors: Zheludev, Ivan N., Edgar, Robert C., Lopez-Galiano, Maria Jose, de la Peña, Marcos, Babaian, Artem, Bhatt, Ami S., Fire, Andrew Z.

Source: In Cell 14 November 2024 187(23):6521-6536

Parallel gene size and isoform expansion of ancient neuronal genes

Authors: McCoy, Matthew J., Fire, Andrew Z.

Source: In Current Biology 22 April 2024 34(8):1635-1645

Kidney biopsies among persons living in hotspots of CKDu: a position statement from the International Society of Nephrology’s Consortium of Collaborators on CKDu

Authors: Anand, Shuchi, Avila-Casado, Carmen, Bavanandan, Sunita, Bajpai, Divya, Behera, Suman, Brown, Jared M., Caplin, Ben, Daniel, Christoph, de Broe, Marc, Enghard, Philipp, Fuentes, Alejandro Ferreiro, Fire, Andrew Z., Fischer, Rebecca S.B., Friedman, David, Garcia, Pablo, González-Quiroz, Marvin, Herath, Chula, Honsova, Eva, Jha, Vivekanand, Johnson, Richard J., Kanjanabuch, Talerngsak, Kambham, Neeraja, Bandi, Varun Kumar, Levin, Adeera, Madero, Magdalena, Mandayam, Sreedhar, Mikhailov, Alexei, Nanayakkara, Nishantha, Nishanthi, Nadeesha, Nlandu, Yannick M., Pippias, Maria, Prasad, Narayan, Alam, Muhammad Rafiqul, Polo, Vicente Sanchez, Seshan, Surya V., Sheikh-Hamad, David, Singh, Geetika, Strasma, Anna, Tzanno-Martins, Carmen, Ulasi, Ifeoma, Vervaet, Benjamin A., Waikar, Sushrut S., Wijewickrama, Eranga, Wijkström, Julia, Yang, Chih-Wei, Paolo, Vicente Sanchez, Courville, Karen

Source: In Kidney International March 2024 105(3):464-469

Describing Natural History and Exploring Risk Factors for Kidney Function Decline in Persons With CKD of Uncertain Etiology in Sri Lanka

Authors: Hewavitharana, Pasan, Schensul, Stephen, Lee, Edison, Montez-Rath, Maria, Senarathne, Sachintha, Liu, Sai, Harold, Kaitlin, Hewapathiranage, Santhushya, Erandika, Naduni, Abeysundara, Hemalika T.K., Yu, Xue, Bhalla, Vivek, Fire, Andrew, Levin, Adeera, Anand, Shuchi, Vlahos, Penny, Chandrajith, Rohana, Nanayakkara, Nishantha

Source: Kidney international reports. 8(7):1430-1438

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100193913497.0x000001&indx=1&recIds=ETOCvdc_100193913497.0x000001

Heterologous reporter expression in the planarian Schmidtea mediterranea through somatic mRNA transfection

Authors: Hall, Richard Nelson, Weill, Uri, Drees, Leonard, Leal-Ortiz, Sergio, Li, Hongquan, Khariton, Margarita, Chai, Chew, Xue, Yuan, Rosental, Benyamin, Quake, Stephen R., Sánchez Alvarado, Alejandro, Melosh, Nicholas A., Fire, Andrew Z., Rink, Jochen C., Wang, Bo

Source: In Cell Reports Methods 24 October 2022 2(10)

Lymphoid blast transformation in an MPN with BCR-JAK2 treated with ruxolitinib: putative mechanisms of resistance

Authors: Chen, Justin Anthony, Hou, Yanli, Roskin, Krishna M., Arber, Daniel A., Bangs, Charles D., Baughn, Linda B., Cherry, Athena M., Ewalt, Mark D., Fire, Andrew Z., Fresard, Laure, Kearney, Hutton M., Montgomery, Stephen B., Ohgami, Robert S., Pearce, Kathryn E., Pitel, Beth A., Merker, Jason D. ^{*, **}, Gotlib, Jason ^*

Source: In Blood Advances 14 September 2021 5(17):3492-3496

An essential role for the piRNA pathway in regulating the ribosomal RNA pool in C. elegans

Authors: Wahba, Lamia, Hansen, Loren, Fire, Andrew Z.

Source: In Developmental Cell 23 August 2021 56(16):2295-2312

Estimating Clonality

Authors: Liu, Yi, Fire, Andrew Z., Boyd, Scott, Olshen, Richard A.

Subject Terms: Statistics - Methodology, Quantitative Biology - Populations and Evolution

Access URL: http://arxiv.org/abs/1408.1149

Doubling of the known set of RNA viruses by metagenomic analysis of an aquatic virome

Authors: Wolf, Yuri I., Silas, Sukrit, Wang, Yongjie, Wu, Shuang, Bocek, Michael, Kazlauskas, Darius, Krupovic, Mart, Fire, Andrew, Dolja, Valerian V., Koonin, Eugene V.

Source: Nature microbiology. 5(10):1262-1270

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100174420072.0x000001&indx=1&recIds=ETOCvdc_100174420072.0x000001

CLONALITY : POINT ESTIMATION

Authors: Tian, Lu, Liu, Yi, Fire, Andrew Z., Boyd, Scott D., Olshen, Richard A.

Source: The Annals of Applied Statistics, 2019 Mar 01. 13(1), 113-131.

Access URL: https://www.jstor.org/stable/26666177

Maternal Ribosomes Are Sufficient for Tissue Diversification during Embryonic Development in C. elegans

Authors: Cenik, Elif Sarinay, Meng, Xuefeng, Tang, Ngang Heok, Hall, Richard Nelson, Arribere, Joshua A., Cenik, Can, Jin, Yishi, Fire, Andrew

Source: In Developmental Cell 25 March 2019 48(6):811-826

Assessment and Maintenance of Unigametic Germline Inheritance for C. elegans

Authors: Artiles, Karen L., Fire, Andrew Z., Frøkjær-Jensen, Christian

Source: In Developmental Cell 25 March 2019 48(6):827-839

A Reverse Transcriptase-Cas1 Fusion Protein Contains a Cas6 Domain Required for Both CRISPR RNA Biogenesis and RNA Spacer Acquisition

Authors: Mohr, Georg, Silas, Sukrit, Stamos, Jennifer L., Makarova, Kira S., Markham, Laura M., Yao, Jun, Lucas-Elío, Patricia, Sanchez-Amat, Antonio, Fire, Andrew Z., Koonin, Eugene V., Lambowitz, Alan M.

Source: In Molecular Cell 15 November 2018 72(4):700-714

Target-dependent nickase activities of the CRISPR–Cas nucleases Cpf1 and Cas9

Authors: Fu, Becky, Smith, Justin, Fuchs, Ryan, Mabuchi, Megumu, Curcuru, Jennifer, Robb, G., Fire, Andrew

Source: Nature microbiology. 4(5):888-897

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100133345002.0x000001&indx=1&recIds=ETOCvdc_100133345002.0x000001

Epidemiology, molecular, and genetic methodologies to evaluate causes of CKDu around the world: report of the Working Group from the ISN International Consortium of Collaborators on CKDu

Authors: Anand, Shuchi, Caplin, Ben, Gonzalez-Quiroz, Marvin, Schensul, Stephen L., Bhalla, Vivek, Parada, Xavier, Nanayakkara, Nishantha, Fire, Andrew, Levin, Adeera, Friedman, David J.

Source: Kidney international. 96(6):1254-1260

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100093028333.0x000001&indx=1&recIds=ETOCvdc_100093028333.0x000001

Ribosome clearance during RNA interference

Authors: Pule, Makena N., Glover, Marissa L., Fire, Andrew Z., Arribere, Joshua A.

Source: RNA. 25(8):963-974

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCRN620948352&indx=1&recIds=ETOCRN620948352

Recompleting the Caenorhabditis elegans genome

Authors: Yoshimura, Jun, Ichikawa, Kazuki, Shoura, Massa J., Artiles, Karen L., Gabdank, Idan, Wahba, Lamia, Smith, Cheryl L., Edgley, Mark L., Rougvie, Ann E., Fire, Andrew Z.

Source: Genome research. 29(6):1009-1022

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCRN620609327&indx=1&recIds=ETOCRN620609327

Sequence-Modified Antibiotic Resistance Genes Provide Sustained Plasmid-Mediated Transgene Expression in Mammals

Authors: Lu, Jiamiao, Zhang, Feijie, Fire, Andrew Z., Kay, Mark A.

Source: In Molecular Therapy 3 May 2017 25(5):1187-1198

Transmission Dynamics of Heritable Silencing Induced by Double-Stranded RNA in Caenorhabditis elegans.

Authors: Alcazar, Rosa M., Lin, Rueyling, Fire, Andrew Z.

Source: Genetics; November 2008, Vol. 180 Issue 3, p1275-1288, 14p