High Prevalence of Chromosomal Rearrangements and LINE Retrotranspositions Detected in Formalin-Fixed, Paraffin-Embedded Colorectal Cancer Tissue

Authors: Rubio-Alarcón, Carmen, Stelloo, Ellen, Vessies, Daan C.L., van 't Erve, Iris, Mekkes, Nienke J., Swennenhuis, Joost, Lakbir, Soufyan, van Bree, Elisabeth J., Tijssen, Marianne, Delis-van Diemen, Pien, Lanfermeijer, Mirthe, Linders, Theodora, van den Broek, Daan, Punt, Cornelis J.A., Heringa, Jaap, Meijer, Gerrit A., Abeln, Sanne, Feitsma, Harma, Fijneman, Remond J.A.

Source: In The Journal of Molecular Diagnostics December 2024 26(12):1065-1080

Formalin-Fixed, Paraffin-Embedded–Targeted Locus Capture: A Next-Generation Sequencing Technology for Accurate DNA-Based Gene Fusion Detection in Bone and Soft Tissue Tumors

Authors: Stelloo, Ellen, Meijers, Ruud W.J., Swennenhuis, Joost F., Allahyar, Amin, Hajo, Karima, Cangiano, Mario, de Leng, Wendy W.J., van Helvert, Sjoerd, Van der Meulen, Joni, Creytens, David, van Kempen, Léon C., Cleton-Jansen, Anne-Marie, Bovee, Judith V.M.G., de Laat, Wouter, Splinter, Erik, Feitsma, Harma

Source: In The Journal of Molecular Diagnostics October 2023 25(10):758-770

Minimal residual disease (MRD) detection in acute lymphoblastic leukaemia based on fusion genes and genomic deletions: towards MRD for all

Authors: Kuiper, Roland P., Hoogeveen, Patricia G., Bladergroen, Reno, Dijk, Freerk, Sonneveld, Edwin, Leeuwen, Frank N., Boer, Judith, Sergeeva, Irina, Feitsma, Harma, Boer, Monique L., Velden, Vincent H. J.

Source: British journal of haematology. 194(5):888-892

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100132961651.0x000001&indx=1&recIds=ETOCvdc_100132961651.0x000001

Proximity ligation‐based sequencing for the identification of human papillomavirus genomic integration sites in formalin‐fixed paraffin embedded oropharyngeal squamous cell carcinomas.

Authors: Demers, Imke, Balaji, Harini, Feitsma, Harma, Stelloo, Ellen, Swennenhuis, Joost, Sergeeva, Irina, Wuerdemann, Nora, van den Hout, Mari F. C. M., Wagner, Steffen, Kremer, Bernd, Klussmann, Jens P., Huebbers, Christian U., Speel, Ernst‐Jan M.

Source: Journal of Medical Virology; Aug2024, Vol. 96 Issue 8, p1-14, 14p

Subject Terms: HUMAN papillomavirus, CHROMOSOMAL rearrangement, VIRAL genomes, POLYMERASE chain reaction, SQUAMOUS cell carcinoma

Mlh1 Deficiency in Zebrafish Results in Male Sterility and Aneuploid as Well as Triploid Progeny in Females.

Authors: Feitsma, Harma, Leal, Marcelo C., Moens, Peter B.

Source: Genetics; April 2007, Vol. 175 Issue 4, p1561-1569, 9p

Non-IG::MYC in diffuse large B-cell lymphoma confers variable genomic configurations and MYC transactivation potential

Authors: Zhang, Chunye, Stelloo, Ellen, Barrans, Sharon, Cucco, Francesco, Jiang, Dan, Tzioni, Maria-Myrsini, Chen, Zi, Li, Yan, Swennenhuis, Joost F., Makker, Jasmine, Rásó-Barnett, Lívia, Liu, Hongxiang, El-Daly, Hesham, Soilleux, Elizabeth, Shah, Nimish, Nagumantry, Sateesh Kumar, Kyaw, Maw, Prahladan, Mahesh Panatt, Tooze, Reuben, Westhead, David R., Feitsma, Harma, Davies, Andrew J., Burton, Catherine, Johnson, Peter W. M., Du, Ming-Qing

Source: Leukemia; March 2024, Vol. 38 Issue: 3 p621-629, 9p

Devices and methods for microarray selection

Protein biomarker enrichment by biomarker antibody complex elution for immunoassay biosensing

Authors: Sabatte, Gwenola, Feitsma, Harma, Evers, Toon H., Prins, Menno W.J.

Source: In Biosensors and Bioelectronics 15 November 2011 29(1):18-22

Comparison of NTRK fusion detection methods in microsatellite-instability-high metastatic colorectal cancer.

Authors: Schraa, Suzanna J., Stelloo, Ellen, Laclé, Miangela M., Swennenhuis, Joost F., Brosens, Lodewijk A. A., Fijneman, Remond J. A., Feitsma, Harma, Koopman, Miriam, de Leng, Wendy W., Vink, Geraldine R., Bol, Guus M.

Source: Virchows Archiv: European Journal of Pathology; Jun2023, Vol. 482 Issue 6, p983-992, 10p

Targeted locus amplification to develop robust patient-specific assays for liquid biopsies in pediatric solid tumors.

Authors: van Zogchel, Lieke M. J., Lak, Nathalie S. M., Gelineau, Nina U., Sergeeva, Irina, Stelloo, Ellen, Swennenhuis, Joost, Feitsma, Harma, van Min, Max, Splinter, Erik, Bleijs, Margit, Koerkamp, Marian Groot, Breunis, Willemijn, Meister, Michael Torsten, Kholossy, Waleed Hassan, Holstege, Frank C. P., Molenaar, Jan J., de Leng, Wendy W. J., Stutterheim, Janine, van der Schoot, C. Ellen, Tytgat, Godelieve A. M.

Source: Frontiers in Oncology; 2023, p1-12, 12p

Subject Terms: CELL-free DNA, NEUROBLASTOMA, EWING'S sarcoma, GENE fusion, TUMORS, LIQUIDS

Method for amplifying nucleic acids

DEVICES AND METHODS FOR MICROARRAY SELECTION

Function and regulation of Alx4 in limb development: Complex genetic interactions with Gli3 and Shh.

Authors: Kuijper, Sanne, Feitsma, Harma, Sheth, Rushikesh

Source: Developmental Biology; September 15 2005, Vol. 285 Issue 2, p533-544, 12p

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Highly Efficient ENU Mutagenesis in Zebrafish.

Authors: de Bruijn, Ewart, Cuppen, Edwin, Feitsma, Harma

Source: Zebrafish (9781603279765); 2009, p3-12, 10p

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