HIV, smoking, and the brain: a convergence of neurotoxicities.

Authors: Orlinick, Benjamin L.¹ (AUTHOR), Farhadian, Shelli F.¹ (AUTHOR) shelli.farhadian@yale.edu

Source: AIDS Research & Therapy. 2/6/2025, Vol. 22 Issue 1, p1-9. 9p.

Subject Terms: *SYNDROMES, *NEUROTOXICOLOGY, *SMOKING, *BRAIN, *APOPTOSIS, *HIV infections, *OXIDATIVE stress, *NEUROINFLAMMATION, *PSYCHOLOGY of HIV-positive persons, *CHOLINERGIC receptors

Neurosyphilis is characterized by a compartmentalized and robust neuroimmune response but not by neuronal injury

Authors: Catalano, Allison A., Yoon, Jennifer, Fertuzinhos, Sofia, Reisert, Hailey, Walsh, Hannah, Kosana, Priya, Wilson, Michael, Gisslen, Magnus, Zetterberg, Henrik, Marra, Christina M., Farhadian, Shelli F.

Source: In Med 12 April 2024 5(4):321-334

Evaluation of Plasma Biomarkers to Predict Major Adverse Kidney Events in Hospitalized Patients With COVID-19

Authors: Deng, Jie, Atta, Mo, Bagnasco, Serena M., Ko, Albert, Iwasaki, Akiko, Farhadian, Shelli, Nelson, Allison, Casanovas-Massana, Arnau, White, Elizabeth B., Schulz, Wade, Coppi, Andreas, Young, Patrick, Nunez, Angela, Shepard, Denise, Matos, Irene, Strong, Yvette, Anastasio, Kelly, Brower, Kristina, Kuang, Maxine, Chiorazzi, Michael, Bermejo, Santos, Vijayakumar, Pavithra, Geng, Bertie, Fournier, John, Minasyan, Maksym, Muenker, M. Catherine, Moore, Adam J., Nadkarni, Girish, Menez, Steven, Coca, Steven G., Moledina, Dennis G., Wen, Yumeng, Chan, Lili, Thiessen-Philbrook, Heather, Obeid, Wassim, Garibaldi, Brian T., Azeloglu, Evren U., Ugwuowo, Ugochukwu, Sperati, C. John, Arend, Lois J., Rosenberg, Avi Z., Kaushal, Madhurima, Jain, Sanjay, Wilson, F. Perry, Parikh, Chirag R.

Source: In American Journal of Kidney Diseases September 2023 82(3):322-332

Phenotypes of disease severity in a cohort of hospitalized COVID-19 patients: Results from the IMPACC study

Authors: Ozonoff, Al, Schaenman, Joanna, Jayavelu, Naresh Doni, Milliren, Carly E., Calfee, Carolyn S., Cairns, Charles B., Kraft, Monica, Baden, Lindsey R., Shaw, Albert C., Krammer, Florian, van Bakel, Harm, Esserman, Denise A., Liu, Shanshan, Sesma, Ana Fernandez, Simon, Viviana, Hafler, David A., Montgomery, Ruth R., Kleinstein, Steven H., Levy, Ofer, Bime, Chris, Haddad, Elias K., Erle, David J., Pulendran, Bali, Nadeau, Kari C., Davis, Mark M, Hough, Catherine L., Messer, William B., Higuita, Nelson I. Agudelo, Metcalf, Jordan P., Atkinson, Mark A., Brakenridge, Scott C., Corry, David, Kheradmand, Farrah, Ehrlich, Lauren I.R., Melamed, Esther, McComsey, Grace A., Sekaly, Rafick, Diray-Arce, Joann, Peters, Bjoern, Augustine, Alison D., Reed, Elaine F., McEnaney, Kerry, Barton, Brenda, Lentucci, Claudia, Saluvan, Mehmet, Chang, Ana C., Hoch, Annmarie, Albert, Marisa, Shaheen, Tanzia, Kho, Alvin T., Thomas, Sanya, Chen, Jing, Murphy, Maimouna D., Cooney, Mitchell, Presnell, Scott, Fragiadakis, Gabriela K., Patel, Ravi, Guan, Leying, Gygi, Jeremy, Pawar, Shrikant, Brito, Anderson, Khalil, Zain, Maguire, Cole, Fourati, Slim, Overton, James A., Vita, Randi, Westendorf, Kerstin, Salehi-Rad, Ramin, Leligdowicz, Aleksandra, Matthay, Michael A., Singer, Jonathan P., Kangelaris, Kirsten N., Hendrickson, Carolyn M., Krummel, Matthew F., Langelier, Charles R., Woodruff, Prescott G., Powell, Debra L., Kim, James N., Simmons, Brent, Goonewardene, I. Michael, Smith, Cecilia M., Martens, Mark, Mosier, Jarrod, Kimura, Hiroki, Sherman, Amy C., Walsh, Stephen R., Issa, Nicolas C., Dela Cruz, Charles, Farhadian, Shelli, Iwasaki, Akiko, Ko, Albert I., Chinthrajah, Sharon, Ahuja, Neera, Rogers, Angela J., Artandi, Maja, Siegel, Sarah A.R., Lu, Zhengchun, Drevets, Douglas A., Brown, Brent R., Anderson, Matthew L., Guirgis, Faheem W., Thyagarajan, Rama V., Rousseau, Justin F., Wylie, Dennis, Busch, Johanna, Gandhi, Saurin, Triplett, Todd A., Yendewa, George, Giddings, Olivia, Anderson, Evan J., Mehta, Aneesh K., Sevransky, Jonathan E., Khor, Bernard, Rahman, Adeeb, Stadlbauer, Daniel, Dutta, Jayeeta, Xie, Hui, Kim-Schulze, Seunghee, Gonzalez-Reiche, Ana Silvia, van de Guchte, Adriana, Farrugia, Keith, Khan, Zenab, Maecker, Holden T., Elashoff, David, Brook, Jenny, Ramires-Sanchez, Estefania, Llamas, Megan, Rivera, Adreanne, Perdomo, Claudia, Ward, Dawn C., Magyar, Clara E., Fulcher, Jennifer A., Abe-Jones, Yumiko, Asthana, Saurabh, Beagle, Alexander, Bhide, Sharvari, Carrillo, Sidney A., Chak, Suzanna, Ghale, Rajani, Gonzalez, Ana, Jauregui, Alejandra, Jones, Norman, Lea, Tasha, Lee, Deanna, Lota, Raphael, Milush, Jeff, Nguyen, Viet, Pierce, Logan, Prasad, Priya A., Rao, Arjun, Samad, Bushra, Shaw, Cole, Sigman, Austin, Sinha, Pratik, Ward, Alyssa, Willmore, Andrew, Zhan, Jenny, Rashid, Sadeed, Rodriguez, Nicklaus, Tang, Kevin, Altamirano, Luz Torres, Betancourt, Legna, Curiel, Cindy, Sutter, Nicole, Paz, Maria Tercero, Tietje-Ulrich, Gayelan, Leroux, Carolyn, Connors, Jennifer, Bernui, Mariana, Kutzler, Michel A., Edwards, Carolyn, Lee, Edward, Lin, Edward, Croen, Brett, Semenza, Nicholas C., Rogowski, Brandon, Melnyk, Nataliya, Woloszczuk, Kyra, Cusimano, Gina, Bell, Mathew R., Furukawa, Sara, McLin, Renee, Marrero, Pamela, Sheidy, Julie, Tegos, George P., Nagle, Crystal, Mege, Nathan, Ulring, Kristen, Seyfert-Margolis, Vicki, Conway, Michelle, Francisco, Dave, Molzahn, Allyson, Erickson, Heidi, Wilson, Connie Cathleen, Schunk, Ron, Sierra, Bianca, Hughes, Trina, Smolen, Kinga, Desjardins, Michael, van Haren, Simon, Mitre, Xhoi, Cauley, Jessica, Li, Xiaofang, Tong, Alexandra, Evans, Bethany, Montesano, Christina, Licona, Jose Humberto, Krauss, Jonathan, Chang, Jun Bai Park, Izaguirre, Natalie, Chaudhary, Omkar, Coppi, Andreas, Fournier, John, Mohanty, Subhasis, Muenker, M. Catherine, Nelson, Allison, Raddassi, Khadir, Rainone, Michael, Ruff, William E., Salahuddin, Syim, Schulz, Wade L., Vijayakumar, Pavithra, Wang, Haowei, Wunder Jr., Elsio, Young, H. Patrick, Zhao, Yujiao, Saksena, Miti, Altman, Deena, Kojic, Erna, Srivastava, Komal, Eaker, Lily Q., Bermúdez-González, Maria C., Beach, Katherine F., Sominsky, Levy A., Azad, Arman R., Carreño, Juan Manuel, Singh, Gagandeep, Raskin, Ariel, Tcheou, Johnstone, Bielak, Dominika, Kawabata, Hisaaki, Mulder, Lubbertus CF, Kleiner, Giulio, Lee, Alexandra S., Do, Evan Do, Fernandes, Andrea, Manohar, Monali, Hagan, Thomas, Blish, Catherine A., Din, Hena Naz, Roque, Jonasel, Yang, Samuel, Brunton, Amanda, Sullivan, Peter E., Strnad, Matthew, Lyski, Zoe L., Coulter, Felicity J., Booth, J. Leland, Sinko, Lauren A., Moldawer, Lyle L., Borresen, Brittany, Roth-Manning, Brittney, Song, Li-Zhen, Nelson, Ebony, Lewis-Smith, Megan, Smith, Jacob, Tipan, Pablo Guaman, Siles, Nadia, Bazzi, Sam, Geltman, Janelle, Hurley, Kerin, Gabriele, Gio, Sieg, Scott, Vaysman, Tatyana, Bristow, Laurel, Hussaini, Laila, Hellmeister, Kieffer, Samaha, Hady, Cheng, Andrew, Spainhour, Christine, Scherer, Erin M., Johnson, Brandi, Bechnak, Amer, Ciric, Caroline R., Hewitt, Lauren, Carter, Erin, Mcnair, Nina, Panganiban, Bernadine, Huerta, Christopher, Usher, Jacob, Ribeiro, Susan Pereira, Altman, Matthew C., Becker, Patrice M., Rouphael, Nadine, Bime, Christian, Davis, Mark M.

Source: In eBioMedicine September 2022 83

Epigenetic Changes in Cerebrospinal Fluid and Blood of People With Neurosyphilis.

Authors: Mostaghimi, Darius, Mehta, Sameet, Yoon, Jennifer, Kosana, Priya, Marra, Christina M, Corley, Michael J, Farhadian, Shelli F

Source: Journal of Infectious Diseases; 4/15/2025, Vol. 231 Issue 4, p883-893, 11p

Subject Terms: GENE expression, MONONUCLEAR leukocytes, SEXUALLY transmitted diseases, CEREBROSPINAL fluid, DNA methylation

Development of an efficient reproducible cell-cell transmission assay for rapid quantification of SARS-CoV-2 spike interaction with hACE2

Authors: Ssenyange, George, Kerfoot, Maya, Zhao, Min, Farhadian, Shelli, Chen, Sidi, Peng, Lei, Ren, Ping, Dela Cruz, Charles S., Gupta, Shaili, Sutton, Richard E.

Source: In Cell Reports Methods 18 July 2022 2(7)

Prognostic Significance of Urinary Biomarkers in Patients Hospitalized With COVID-19

Authors: Ko, Albert, Iwasaki, Akiko, Farhadian, Shelli, Nelson, Allison, Casanovas-Massana, Arnau, White, Elizabeth B., Schulz, Wade, Coppi, Andreas, Young, Patrick, Nunez, Angela, Shepard, Denise, Matos, Irene, Strong, Yvette, Anastasio, Kelly, Brower, Kristina, Kuang, Maxine, Chiorazzi, Michael, Bermejo, Santos, Vijayakumar, Pavithra, Geng, Bertie, Fournier, John, Minasyan, Maksym, Muenker, M. Catherine, Moore, Adam J., Nadkarni, Girish, Menez, Steven, Moledina, Dennis G., Thiessen-Philbrook, Heather, Wilson, F. Perry, Obeid, Wassim, Simonov, Michael, Yamamoto, Yu, Corona-Villalobos, Celia P., Chang, Crystal, Garibaldi, Brian T., Clarke, William, Dela Cruz, Charles, Coca, Steven G., Parikh, Chirag R.

Source: In American Journal of Kidney Diseases February 2022 79(2):257-267

Divergent and self-reactive immune responses in the CNS of COVID-19 patients with neurological symptoms

Authors: Song, Eric, Bartley, Christopher M., Chow, Ryan D., Ngo, Thomas T., Jiang, Ruoyi, Zamecnik, Colin R., Dandekar, Ravi, Loudermilk, Rita P., Dai, Yile, Liu, Feimei, Sunshine, Sara, Liu, Jamin, Wu, Wesley, Hawes, Isobel A., Alvarenga, Bonny D., Huynh, Trung, McAlpine, Lindsay, Rahman, Nur-Taz, Geng, Bertie, Chiarella, Jennifer, Goldman-Israelow, Benjamin, Vogels, Chantal B.F., Grubaugh, Nathan D., Casanovas-Massana, Arnau, Phinney, Brett S., Salemi, Michelle, Alexander, Jessa R., Gallego, Juan A., Lencz, Todd, Walsh, Hannah, Wapniarski, Anne E., Mohanty, Subhasis, Lucas, Carolina, Klein, Jon, Mao, Tianyang, Oh, Jieun, Ring, Aaron, Spudich, Serena, Ko, Albert I., Kleinstein, Steven H., Pak, John, DeRisi, Joseph L., Iwasaki, Akiko, Pleasure, Samuel J., Wilson, Michael R., Farhadian, Shelli F.

Source: In Cell Reports Medicine 18 May 2021 2(5)

Maternal respiratory SARS-CoV-2 infection in pregnancy is associated with a robust inflammatory response at the maternal-fetal interface

Authors: Lu-Culligan, Alice, Chavan, Arun R., Vijayakumar, Pavithra, Irshaid, Lina, Courchaine, Edward M., Milano, Kristin M., Tang, Zhonghua, Pope, Scott D., Song, Eric, Vogels, Chantal B.F., Lu-Culligan, William J., Campbell, Katherine H., Casanovas-Massana, Arnau, Bermejo, Santos, Toothaker, Jessica M., Lee, Hannah J., Liu, Feimei, Schulz, Wade, Fournier, John, Muenker, M. Catherine, Moore, Adam J., Konnikova, Liza, Neugebauer, Karla M., Ring, Aaron, Grubaugh, Nathan D., Ko, Albert I., Morotti, Raffaella, Guller, Seth, Kliman, Harvey J., Iwasaki, Akiko, Farhadian, Shelli F.

Source: In Med 14 May 2021 2(5):591-610

SalivaDirect: A simplified and flexible platform to enhance SARS-CoV-2 testing capacity

Authors: Anastasio, Kelly, Askenase, Michael H., Batsu, Maria, Bickerton, Sean, Brower, Kristina, Bucklin, Molly L., Cahill, Staci, Cao, Yiyun, Courchaine, Edward, DeIuliis, Giuseppe, Earnest, Rebecca, Geng, Bertie, Goldman-Israelow, Benjamin, Handoko, Ryan, Khoury-Hanold, William, Kim, Daniel, Knaggs, Lynda, Kuang, Maxine, Lapidus, Sarah, Lim, Joseph, Linehan, Melissa, Lu-Culligan, Alice, Martin, Anjelica, Matos, Irene, McDonald, David, Minasyan, Maksym, Nakahata, Maura, Naushad, Nida, Nouws, Jessica, Obaid, Abeer, Odio, Camila, Oh, Ji Eun, Omer, Saad, Park, Annsea, Park, Hong-Jai, Peng, Xiaohua, Petrone, Mary, Prophet, Sarah, Rice, Tyler, Rose, Kadi-Ann, Sewanan, Lorenzo, Sharma, Lokesh, Shaw, Albert C., Shepard, Denise, Smolgovsky, Mikhail, Sonnert, Nicole, Strong, Yvette, Todeasa, Codruta, Valdez, Jordan, Velazquez, Sofia, Vijayakumar, Pavithra, White, Elizabeth B., Yang, Yexin, Vogels, Chantal B.F., Watkins, Anne E., Harden, Christina A., Brackney, Doug E., Shafer, Jared, Wang, Jianhui, Caraballo, César, Kalinich, Chaney C., Ott, Isabel M., Fauver, Joseph R., Kudo, Eriko, Lu, Peiwen, Venkataraman, Arvind, Tokuyama, Maria, Moore, Adam J., Muenker, M. Catherine, Casanovas-Massana, Arnau, Fournier, John, Bermejo, Santos, Campbell, Melissa, Datta, Rupak, Nelson, Allison, Dela Cruz, Charles S., Ko, Albert I., Iwasaki, Akiko, Krumholz, Harlan M., Matheus, J.D., Hui, Pei, Liu, Chen, Farhadian, Shelli F., Sikka, Robby, Wyllie, Anne L., Grubaugh, Nathan D.

Source: In Med 12 March 2021 2(3):263-280

Neurologic Complications of Babesiosis, United States, 2011-2021.

Authors: Locke, Sara¹, O'Bryan, Jane^1,2, Zubair, Adeel S.¹, Rethana, Melissa¹, Spichler Moffarah, Anne¹, Krause, Peter J.^1,3, Farhadian, Shelli F.^1,3, shelli.farhadian@yale.edu

Source: Emerging Infectious Diseases; Jun2023, Vol. 29 Issue 6, p1127-1135, 9p, 4 Charts, 1 Graph

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Identification of Receptors for Pig Endogenous Retrovirus

Authors: Ericsson, Thomas A., Takeuchi, Yasuhiro, Templin, Christian, Quinn, Gary, Farhadian, Shelli F., Wood, James C., Oldmixon, Beth A., Suling, Kristen M., Ishii, Jennifer K., Kitagawa, Yoshinori, Miyazawa, Takayuki, Salomon, Daniel R., Weiss, Robin A., Patience, Clive

Source: Proceedings of the National Academy of Sciences of the United States of America, 2003 May . 100(11), 6759-6764.

Access URL: https://www.jstor.org/stable/3144138

Retinal integrity in human babesiosis: a pilot study.

Authors: Dionne, Elyssa, Adelman, Ron A., Cekic, Osman, Golden, Marjorie, Moffarah, Anne Spichler, Krause, Peter J., Farhadian, Shelli F.

Source: BMC Ophthalmology; 7/24/2024, Vol. 24 Issue 1, p1-4, 4p

Subject Terms: BABESIOSIS, PUPILLARY reflex, PILOT projects, EYE examination, HOSPITAL laboratories

Climate Change and Meningoencephalitis in the Americas: A Brewing Storm.

Authors: Dionne, Elyssa, Machiavello Roman, Francisco, Farhadian, Shelli

Source: Current Infectious Disease Reports; Jul2024, Vol. 26 Issue 7, p189-196, 8p

Polypharmacy Is Associated With Slow Gait Speed and Recurrent Falls in Older People With HIV.

Authors: Kosana, Priya, Wu, Kunling, Tassiopoulos, Katherine, Letendre, Scott, Ma, Qing, Paul, Robert, Ellis, Ronald, Erlandson, Kristine M, Farhadian, Shelli F

Source: Clinical Infectious Diseases; 6/15/2024, Vol. 78 Issue 6, p1608-1616, 9p

Subject Terms: HIV infection complications, HIV infection epidemiology, RISK assessment, ANTIRETROVIRAL agents, STATISTICAL significance, RESEARCH funding, KRUSKAL-Wallis Test, MULTIPLE regression analysis, HIV infections, POLYPHARMACY, TREATMENT effectiveness, MANN Whitney U Test, CHI-squared test, MULTIVARIATE analysis, DESCRIPTIVE statistics, PSYCHOLOGY of HIV-positive persons, LONGITUDINAL method, ODDS ratio, MATHEMATICAL models, STATISTICS, WALKING speed, DRUGS, THEORY, CONFIDENCE intervals, DATA analysis software, ACCIDENTAL falls, COMORBIDITY, OLD age

Maternal acute SARS-CoV-2 infection induces placental galectins transcriptional changes

Authors: Zhao, Fangqi, Lu-Culligan, Alice, Vijayakumar, Pavithra, Garcia, Mariana, Tallarek, Ann C., Farhadian, Shelli, Diemert, Anke, Blois, Sandra M.

Source: In Journal of Reproductive Immunology September 2023 159

Increased SARS-CoV-2 Testing Capacity with Pooled Saliva Samples.

Authors: Watkins, Anne E.¹, eli.fenichel@yale.edu, Fenichel, Eli P.², Weinberger, Daniel M.¹, Vogels, Chantal B. F.¹, Brackney, Doug E.³, Casanovas-Massana, Arnau¹, Campbell, Melissa⁴, Fournier, John⁴, Bermejo, Santos¹, Datta, Rupak⁴, Dela Cruz, Charles S.⁴, Farhadian, Shelli F.⁴, Akiko Iwasaki^4,5, Ko, Albert I.⁴, Grubaugh, Nathan D.¹, Wyllie, Anne L.¹, Iwasaki, Akiko, Yale IMPACT Research Team2

Source: Emerging Infectious Diseases; Apr2021, Vol. 27 Issue 4, p1184-1187, 4p

Stability of SARS-CoV-2 RNA in Nonsupplemented Saliva.

Authors: Ott, Isabel M.¹, Strine, Madison S.², Watkins, Anne E.¹, nathan.grubaugh@yale.edu, Boot, Maikel², Kalinich, Chaney C.¹, Harden, Christina A.¹, Vogels, Chantal B. F.¹, Casanovas-Massana, Arnau¹, Moore, Adam J.¹, Muenker, M. Catherine¹, Nakahata, Maura¹, Tokuyama, Maria², Nelson, Allison², Fournier, John², Bermejo, Santos², Campbell, Melissa², Datta, Rupak², Cruz, Charles S. Dela², Farhadian, Shelli F.², Ko, Albert I.²

Source: Emerging Infectious Diseases; Apr2021, Vol. 27 Issue 4, p1146-1150, 5p

Acute encephalopathy with elevated CSF inflammatory markers as the initial presentation of COVID-19.

Authors: Farhadian, Shelli^1,2 (AUTHOR) shelli.farhadian@yale.edu, Glick, Laura R.³ (AUTHOR), Vogels, Chantal B. F.⁴ (AUTHOR), Thomas, Jared³ (AUTHOR), Chiarella, Jennifer² (AUTHOR), Casanovas-Massana, Arnau⁴ (AUTHOR), Zhou, Jing⁵ (AUTHOR), Odio, Camila³ (AUTHOR), Vijayakumar, Pavithra³ (AUTHOR), Geng, Bertie³ (AUTHOR), Fournier, John¹ (AUTHOR), Bermejo, Santos⁶ (AUTHOR), Fauver, Joseph R.⁴ (AUTHOR), Alpert, Tara⁴ (AUTHOR), Wyllie, Anne L.⁴ (AUTHOR), Turcotte, Cynthia⁵ (AUTHOR), Steinle, Matthew⁵ (AUTHOR), Paczkowski, Patrick⁵ (AUTHOR), Dela Cruz, Charles⁶ (AUTHOR), Wilen, Craig⁷ (AUTHOR)

Source: BMC Neurology. 6/18/2020, Vol. 20 Issue 1, p1-5. 5p. 2 Black and White Photographs, 1 Chart, 1 Graph.

Subject Terms: *COVID-19, *SARS-CoV-2, *NEUROLOGICAL disorders, *CEREBROSPINAL fluid examination, *SEIZURES (Medicine), *CYTOKINES, *EPIDEMICS, *RESEARCH funding, *SPASMS, *VIRAL pneumonia, *ACUTE diseases, *VIRAL encephalitis