Shared and specific competing endogenous RNAs network mining in four digestive system tumors

Authors: Tang, Yulai ^{a, b, c, 1}, Fahira, Aamir ^{b, 1}, Lin, Siying ^c, Shao, Yiming ^a, Huang, Zunnan ^{a, b, ⁎}

Source: In Computational and Structural Biotechnology Journal December 2024 23:4271-4287

Investigating the role of PmrB mutation on Colistin antibiotics drug resistance in Klebsiella Pneumoniae

Authors: Shahab, Muhammad, Waqas, Muhammad, Fahira, Aamir, Zhang, Haoke, Zheng, Guojun, Huang, Zunnan

Source: In International Journal of Biological Macromolecules November 2024 281 Part 3

Dissecting the genetic and causal relationship between sleep-related traits and common brain disorders

Authors: Xue, Baiqiang ^{a, b, 1}, Jian, Xuemin ^{c, ⁎⁎⁎, 1}, Peng, Lixia ^{a, d, 1}, Wu, Chuanhong ^{a, e, 1}, Fahira, Aamir ^c, Syed, Ali Alamdar Shah ^c, Xia, Disong ^c, Wang, Baokun ^{a, d}, Niu, Mingming ^{a, b}, Jiang, Yajie ^{a, b}, Ding, Yonghe ^{a, b}, Gao, Chengwen ^a, Zhao, Xiangzhong ^a, Zhang, Qian ^a, Shi, Yongyong ^{a, c, e, f, g, h, i, j, k, l, ⁎⁎}, Li, Zhiqiang ^{a, b, c, d, e, f, g, j, ⁎}

Source: In Sleep Medicine July 2024 119:201-209

Chimeric vaccine design against the epidemic Langya Henipavirus using immunoinformatics and validation via immune simulation approaches

Authors: Fahira, Aamir ^{a, b}, Amin, Rana Sherdil ^c, Arshad, Uzma ^d, Khan, Muhammad Idrees ^e, Shah Syed, Ali Alamdar ^a, Alshammari, Abdulrahman ^f, Yang, Qiangzhen ^a, Wang, Zhuo ^{a, b}, Ali, Liaqat ^g, Shi, Yongyong ^{a, b, ∗}

Source: In Heliyon June 2023 9(6)

Scrutinizing the causal relationship between schizophrenia and vitamin supplementation: a Mendelian randomization study

Authors: Fahira, Aamir, Zhu, Zijia, Li, Zhiqiang, Shi, Yongyong

Source: Journal of bio-X research. 5(1):18-26

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100151746117.0x000001&indx=1&recIds=ETOCvdc_100151746117.0x000001

Integrative approaches to m6A and m5C RNA modifications in autism spectrum disorder revealing potential causal variants.

Authors: Jan, Syed Mansoor¹ (AUTHOR), Fahira, Aamir² (AUTHOR), Hassan, Eman S. G.³ (AUTHOR), Abdelhameed, Ali Saber⁴ (AUTHOR), Wei, Dongqing¹ (AUTHOR) dqwei@sjtu.edu.cn, Wadood, Abdul⁵ (AUTHOR) awadood@awkum.edu.pk

Source: Mammalian Genome. Mar2025, Vol. 36 Issue 1, p280-292. 13p.

Integrative omics analysis reveals effective stratification and potential prognosis markers of pan-gastrointestinal cancers

Authors: Jiangzhou, Huiting, Zhang, Hang, Sun, Renliang, Fahira, Aamir, Wang, Ke, Li, Zhiqiang, Shi, Yongyong, Wang, Zhuo

Source: In iScience 20 August 2021 24(8)

Systematic comparative study of computational methods for HLA typing from next‐generation sequencing

Authors: Yu, Yuechun, Wang, Ke, Fahira, Aamir, Yang, Qiangzhen, Sun, Renliang, Li, Zhiqiang, Wang, Zhuo, Shi, Yongyong

Source: HLA. 97(6):481-492

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100121122028.0x000001&indx=1&recIds=ETOCvdc_100121122028.0x000001

Scrutinizing the causal relationship between schizophrenia and vitamin supplementation: a Mendelian randomization study

Authors: Fahira, Aamir, Zhu, Zijia, Li, Zhiqiang, Shi, Yongyong

Source: Journal of bio-X research. 5(1):18-26

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100150828468.0x000001&indx=1&recIds=ETOCvdc_100150828468.0x000001

Common variants in FAN1, located in 15q13.3, confer risk for schizophrenia and bipolar disorder in Han Chinese

Authors: Jian, Xuemin, Chen, Jianhua, Li, Zhiqiang, Fahira, Aamir, Shao, Weihuan, Zhou, Juan, Wang, Ke, Wen, Yanqin, Zhang, Jinmai, Yang, Qiangzhen, Pan, Dun, Wang, Zhuo, Shi, Yongyong

Source: In Progress in Neuropsychopharmacology & Biological Psychiatry 20 December 2020 103

Prediction of functional regulatory elements of bipolar disorder via data integration analysis

Authors: Fahira, Aamir, Zhang, Jinmai, Xuemin, Jian, Li, Zhiqiang, Shi, Yongyong

Source: In Journal of Affective Disorders Reports December 2020 1

Prediction of causal genes and gene expression analysis of attention-deficit hyperactivity disorder in the different brain region, a comprehensive integrative analysis of ADHD

Authors: Fahira, Aamir, Li, Zhiqiang, Liu, Ning, Shi, Yongyong

Source: In Behavioural Brain Research 17 May 2019 364:183-192

Clinical signature and associated immune metabolism of NLRP1 in pan‐cancer.

Authors: Liao, Yong, Yang, Pinglian, Yang, Cui, Zhuang, Kai, Fahira, Aamir, Wang, Jiaojiao, Liu, Zhiping, Yan, Lin, Huang, Zunnan

Source: Journal of Cellular & Molecular Medicine; Sep2024, Vol. 28 Issue 18, p1-18, 18p

Subject Terms: BIG data, DATA analysis, PROGNOSIS, TUMORS, LUNGS

Assessment of SWI/SNF chromatin remodeling complex related genes as potential biomarkers and therapeutic targets in pan-cancer.

Authors: Zhuang, Kai, Wang, Lishan, Lu, Chengyu, Liu, Zhiping, Yang, Dongli, Zhong, Hao, Zou, Jiami, Fahira, Aamir, Wang, Jiaojiao, Huang, Zunnan

Source: Molecular Cancer; 8/27/2024, Vol. 23 Issue 1, p1-6, 6p

Subject Terms: CHROMATIN-remodeling complexes, SOMATIC mutation, CYTOTOXINS, BIOMARKERS, STROMAL cells

Construction of an immune-related prognostic signature and lncRNA–miRNA–mRNA ceRNA network in acute myeloid leukemia.

Authors: Qin, Ling, Li, Boya, Wang, Shijie, Tang, Yulai, Fahira, Aamir, Kou, Yanqi, Li, Tong, Hu, Zhigang, Huang, Zunnan

Source: Journal of Leukocyte Biology; Jul2024, Vol. 116 Issue 1, p146-165, 20p

Subject Terms: COMPETITIVE endogenous RNA, ACUTE myeloid leukemia, LINCRNA, GENE expression, MESSENGER RNA

Genome-wide association of common genetic variants and functional annotation analysis of schizophrenia and white matter abnormalities

Authors: Fahira, Aamir, Syed, Ali Alamdar Shah, Jian, Xuemin, Yang, Qiangzhen, Zheng, Chenxiang, Wadood, Abdul, Wang, Zhuo, Huang, Zunnan ^*, Shi, Yongyong

Source: In Asian Journal of Psychiatry December 2024 102

Functional annotation of regulatory single nucleotide polymorphisms associated with schizophrenia

Authors: Fahira, Aamir, Wang, Dong, Wang, Ke, Wadood, Abdul, Shi, Yongyong

Source: Schizophrenia research. 218:326-328

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100136744679.0x000001&indx=1&recIds=ETOCvdc_100136744679.0x000001

Identification of recurrent USP48 and BRAF mutations in Cushing's disease

Authors: Chen, Jianhua, Jian, Xuemin, Deng, Siyu, Ma, Zengyi, Shou, Xuefei, Shen, Yue, Zhang, Qilin, Song, Zhijian, Li, Zhiqiang, Peng, Hong, Peng, Cheng, Chen, Min, Luo, Cheng, Zhao, Dan, Ye, Zhao, Shen, Ming, Zhang, Yichao, Zhou, Juan, Fahira, Aamir, Wang, Yongfei, Li, Shiqi, Zhang, Zhaoyun, Ye, Hongying, Li, Yiming, Shen, Jiawei, Chen, Hong, Tang, Feng, Yao, Zhenwei, Shi, Zhifeng, Chen, Chunjui, Xie, Lu, Wang, Ye, Fu, Chaowei, Mao, Ying, Zhou, Liangfu, Gao, Daming, Yan, Hai, Zhao, Yao, Huang, Chuanxin, Shi, Yongyong

Source: Nature communications. 9(1):1-9

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100174884673.0x000001&indx=1&recIds=ETOCvdc_100174884673.0x000001

Integrative Genomic Analysis of m6a-SNPs Identifies Potential Functional Variants Associated with Alzheimer's Disease.

Authors: Jan, Syed Mansoor, Fahira, Aamir, Shi, Yongyong, Khan, Mohammad Imran, Jamal, Alam, Mahmood, Arif, Shams, Sulaiman, Parveen, Zahida, Hu, Junjian, Umair, Muhammad, Wadood, Abdul

Source: ACS Omega; 4/11/2023, Vol. 8 Issue 14, p13332-13341, 10p

DROEG: a method for cancer drug response prediction based on omics and essential genes integration.

Authors: Wu, Peike^1,2, Sun, Renliang^1,3, Fahira, Aamir^1,2, Chen, Yongzhou⁴, Jiangzhou, Huiting^1,2, Wang, Ke^1,2, Yang, Qiangzhen^1,2, Dai, Yang^1,2, Pan, Dun^1,2, Shi, Yongyong^1,2, Wang, Zhuo^1,2, zhuowang@sjtu.edu.cn

Source: Briefings in Bioinformatics; Mar2023, Vol. 24 Issue 2, p1-12, 12p