Identification of a viral gene essential for the genome replication of a domesticated endogenous virus in ichneumonid parasitoid wasps.

Authors: Ange Lorenzi, Fabrice Legeai, Véronique Jouan, Pierre-Alain Girard, Michael R Strand, Marc Ravallec, Magali Eychenne, Anthony Bretaudeau, Stéphanie Robin, Jeanne Rochefort, Mathilde Villegas, Gaelen R Burke, Rita Rebollo, Nicolas Nègre, Anne-Nathalie Volkoff

Source: PLoS Pathogens, Vol 20, Iss 4, p e1011980 (2024)

Subject Terms: Immunologic diseases. Allergy, RC581-607, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://doaj.org/toc/1553-7366; https://doaj.org/toc/1553-7374

Access URL: https://doaj.org/article/abeefb8842fc4fabbea73b9ca14404a0

MTG-Link: leveraging barcode information from linked-reads to assemble specific loci

Authors: Anne Guichard, Fabrice Legeai, Denis Tagu, Claire Lemaitre

Source: BMC Bioinformatics, Vol 24, Iss 1, Pp 1-17 (2023)

Subject Terms: Local assembly, Gap-filling, Linked-reads, Barcode, Computer applications to medicine. Medical informatics, R858-859.7, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://doaj.org/toc/1471-2105

Access URL: https://doaj.org/article/24682c3368e344a3b861f289a91e62b1

The evolutionary process of invasion in the fall armyworm (Spodoptera frugiperda)

Authors: Sudeeptha Yainna, Wee Tek Tay, Karine Durand, Estelle Fiteni, Frédérique Hilliou, Fabrice Legeai, Anne-Laure Clamens, Sylvie Gimenez, R. Asokan, C. M. Kalleshwaraswamy, Sharanabasappa S. Deshmukh, Robert L. Meagher, Carlos A. Blanco, Pierre Silvie, Thierry Brévault, Anicet Dassou, Gael J. Kergoat, Thomas Walsh, Karl Gordon, Nicolas Nègre, Emmanuelle d’Alençon, Kiwoong Nam

Source: Scientific Reports, Vol 12, Iss 1, Pp 1-11 (2022)

Subject Terms: Medicine, Science

File Description: electronic resource

Relation: https://doaj.org/toc/2045-2322

Access URL: https://doaj.org/article/4924d3f4849c446f8bfb5e1ffd6045fb

Host-plant adaptation as a driver of incipient speciation in the fall armyworm (Spodoptera frugiperda)

Authors: Estelle Fiteni, Karine Durand, Sylvie Gimenez, Robert L. Meagher, Fabrice Legeai, Gael J. Kergoat, Nicolas Nègre, Emmanuelle d’Alençon, Kiwoong Nam

Source: BMC Ecology and Evolution, Vol 22, Iss 1, Pp 1-11 (2022)

Subject Terms: Fall armyworm, Host-plant adaptation, Incipient speciation, Speciation with gene flow, Spodoptera frugiperda, Ecology, QH540-549.5, Evolution, QH359-425

File Description: electronic resource

Relation: https://doaj.org/toc/2730-7182

Access URL: https://doaj.org/article/fbbd96d64ae144ca84f8224a9a3e0b2d

Global patterns in genomic diversity underpinning the evolution of insecticide resistance in the aphid crop pest Myzus persicae

Authors: Kumar Saurabh Singh, Erick M. G. Cordeiro, Bartlomiej J. Troczka, Adam Pym, Joanna Mackisack, Thomas C. Mathers, Ana Duarte, Fabrice Legeai, Stéphanie Robin, Pablo Bielza, Hannah J. Burrack, Kamel Charaabi, Ian Denholm, Christian C. Figueroa, Richard H. ffrench-Constant, Georg Jander, John T. Margaritopoulos, Emanuele Mazzoni, Ralf Nauen, Claudio C. Ramírez, Guangwei Ren, Ilona Stepanyan, Paul A. Umina, Nina V. Voronova, John Vontas, Martin S. Williamson, Alex C. C. Wilson, Gao Xi-Wu, Young-Nam Youn, Christoph T. Zimmer, Jean-Christophe Simon, Alex Hayward, Chris Bass

Source: Communications Biology, Vol 4, Iss 1, Pp 1-16 (2021)

Subject Terms: Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://doaj.org/toc/2399-3642

Access URL: https://doaj.org/article/8a333d7222eb441abad5e9535093c0a5

Chromosomal scale assembly of parasitic wasp genome reveals symbiotic virus colonization

Authors: Jérémy Gauthier, Hélène Boulain, Joke J. F. A. van Vugt, Lyam Baudry, Emma Persyn, Jean-Marc Aury, Benjamin Noel, Anthony Bretaudeau, Fabrice Legeai, Sven Warris, Mohamed A. Chebbi, Géraldine Dubreuil, Bernard Duvic, Natacha Kremer, Philippe Gayral, Karine Musset, Thibaut Josse, Diane Bigot, Christophe Bressac, Sébastien Moreau, Georges Periquet, Myriam Harry, Nicolas Montagné, Isabelle Boulogne, Mahnaz Sabeti-Azad, Martine Maïbèche, Thomas Chertemps, Frédérique Hilliou, David Siaussat, Joëlle Amselem, Isabelle Luyten, Claire Capdevielle-Dulac, Karine Labadie, Bruna Laís Merlin, Valérie Barbe, Jetske G. de Boer, Martial Marbouty, Fernando Luis Cônsoli, Stéphane Dupas, Aurélie Hua-Van, Gaelle Le Goff, Annie Bézier, Emmanuelle Jacquin-Joly, James B. Whitfield, Louise E. M. Vet, Hans M. Smid, Laure Kaiser, Romain Koszul, Elisabeth Huguet, Elisabeth A. Herniou, Jean-Michel Drezen

Source: Communications Biology, Vol 4, Iss 1, Pp 1-15 (2021)

Subject Terms: Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://doaj.org/toc/2399-3642

Access URL: https://doaj.org/article/6478dae161f64daab3bf22b286e5181c

Genomic architecture of endogenous ichnoviruses reveals distinct evolutionary pathways leading to virus domestication in parasitic wasps

Authors: Fabrice Legeai, Bernardo F. Santos, Stéphanie Robin, Anthony Bretaudeau, Rebecca B. Dikow, Claire Lemaitre, Véronique Jouan, Marc Ravallec, Jean-Michel Drezen, Denis Tagu, Frédéric Baudat, Gabor Gyapay, Xin Zhou, Shanlin Liu, Bruce A. Webb, Seán G. Brady, Anne-Nathalie Volkoff

Source: BMC Biology, Vol 18, Iss 1, Pp 1-23 (2020)

Subject Terms: Endogenous virus architecture, Polydnavirus, Parasitoid wasp, Koinobiont, Campopleginae, IVSPERs, Biology (General), QH301-705.5

File Description: electronic resource

Relation: http://link.springer.com/article/10.1186/s12915-020-00822-3; https://doaj.org/toc/1741-7007

Access URL: https://doaj.org/article/c3118a6fc30e4dfdad3101c63c5b2dd6

The genome sequence of the grape phylloxera provides insights into the evolution, adaptation, and invasion routes of an iconic pest

Authors: Claude Rispe, Fabrice Legeai, Paul D. Nabity, Rosa Fernández, Arinder K. Arora, Patrice Baa-Puyoulet, Celeste R. Banfill, Leticia Bao, Miquel Barberà, Maryem Bouallègue, Anthony Bretaudeau, Jennifer A. Brisson, Federica Calevro, Pierre Capy, Olivier Catrice, Thomas Chertemps, Carole Couture, Laurent Delière, Angela E. Douglas, Keith Dufault-Thompson, Paula Escuer, Honglin Feng, Astrid Forneck, Toni Gabaldón, Roderic Guigó, Frédérique Hilliou, Silvia Hinojosa-Alvarez, Yi-min Hsiao, Sylvie Hudaverdian, Emmanuelle Jacquin-Joly, Edward B. James, Spencer Johnston, Benjamin Joubard, Gaëlle Le Goff, Gaël Le Trionnaire, Pablo Librado, Shanlin Liu, Eric Lombaert, Hsiao-ling Lu, Martine Maïbèche, Mohamed Makni, Marina Marcet-Houben, David Martínez-Torres, Camille Meslin, Nicolas Montagné, Nancy A. Moran, Daciana Papura, Nicolas Parisot, Yvan Rahbé, Mélanie Ribeiro Lopes, Aida Ripoll-Cladellas, Stéphanie Robin, Céline Roques, Pascale Roux, Julio Rozas, Alejandro Sánchez-Gracia, Jose F. Sánchez-Herrero, Didac Santesmasses, Iris Scatoni, Rémy-Félix Serre, Ming Tang, Wenhua Tian, Paul A. Umina, Manuella van Munster, Carole Vincent-Monégat, Joshua Wemmer, Alex C. C. Wilson, Ying Zhang, Chaoyang Zhao, Jing Zhao, Serena Zhao, Xin Zhou, François Delmotte, Denis Tagu

Source: BMC Biology, Vol 18, Iss 1, Pp 1-25 (2020)

Subject Terms: Arthropod genomes, Daktulosphaira vitifoliae, Gene duplications, Host plant interactions, Effectors, Biological invasions, Biology (General), QH301-705.5

File Description: electronic resource

Relation: http://link.springer.com/article/10.1186/s12915-020-00820-5; https://doaj.org/toc/1741-7007

Access URL: https://doaj.org/article/bc996b59e5fd405cb747afed645c9cef

Functional insights from the GC-poor genomes of two aphid parasitoids, Aphidius ervi and Lysiphlebus fabarum

Authors: Alice B. Dennis, Gabriel I. Ballesteros, Stéphanie Robin, Lukas Schrader, Jens Bast, Jan Berghöfer, Leo W. Beukeboom, Maya Belghazi, Anthony Bretaudeau, Jan Buellesbach, Elizabeth Cash, Dominique Colinet, Zoé Dumas, Mohammed Errbii, Patrizia Falabella, Jean-Luc Gatti, Elzemiek Geuverink, Joshua D. Gibson, Corinne Hertaeg, Stefanie Hartmann, Emmanuelle Jacquin-Joly, Mark Lammers, Blas I. Lavandero, Ina Lindenbaum, Lauriane Massardier-Galata, Camille Meslin, Nicolas Montagné, Nina Pak, Marylène Poirié, Rosanna Salvia, Chris R. Smith, Denis Tagu, Sophie Tares, Heiko Vogel, Tanja Schwander, Jean-Christophe Simon, Christian C. Figueroa, Christoph Vorburger, Fabrice Legeai, Jürgen Gadau

Source: BMC Genomics, Vol 21, Iss 1, Pp 1-27 (2020)

Subject Terms: Parasitoid wasp, Aphid host, Aphidius ervi, Lysiphlebus fabarum, GC content, de novo genome assembly, Biotechnology, TP248.13-248.65, Genetics, QH426-470

File Description: electronic resource

Relation: http://link.springer.com/article/10.1186/s12864-020-6764-0; https://doaj.org/toc/1471-2164

Access URL: https://doaj.org/article/9aa15e0959b849d98488571e8f04baa7

Multi-Omic Investigation of Low-Nitrogen Conditional Resistance to Clubroot Reveals Brassica napus Genes Involved in Nitrate Assimilation

Authors: Yoann Aigu, Stéphanie Daval, Kévin Gazengel, Nathalie Marnet, Christine Lariagon, Anne Laperche, Fabrice Legeai, Maria J. Manzanares-Dauleux, Antoine Gravot

Source: Frontiers in Plant Science, Vol 13 (2022)

Subject Terms: oilseed rape, Plasmodiophora, transcriptome, fertilization, disease resistance, NRT2, Plant culture, SB1-1110

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fpls.2022.790563/full; https://doaj.org/toc/1664-462X

Access URL: https://doaj.org/article/395dbb5b630a4737a8931e767244bd35

Correction to: The genome sequence of the grape phylloxera provides insights into the evolution, adaptation, and invasion routes of an iconic pest

Authors: Claude Rispe, Fabrice Legeai, Paul D. Nabity, Rosa Fernández, Arinder K. Arora, Patrice Baa-Puyoulet, Celeste R. Banfill, Leticia Bao, Miquel Barberà, Maryem Bouallègue, Anthony Bretaudeau, Jennifer A. Brisson, Federica Calevro, Pierre Capy, Olivier Catrice, Thomas Chertemps, Carole Couture, Laurent Delière, Angela E. Douglas, Keith Dufault-Thompson, Paula Escuer, Honglin Feng, Astrid Forneck, Toni Gabaldón, Roderic Guigó, Frédérique Hilliou, Silvia Hinojosa-Alvarez, Yi-min Hsiao, Sylvie Hudaverdian, Emmanuelle Jacquin-Joly, Edward B. James, Spencer Johnston, Benjamin Joubard, Gaëlle Le Goff, Gaël Le Trionnaire, Pablo Librado, Shanlin Liu, Eric Lombaert, Hsiao-ling Lu, Martine Maïbèche, Mohamed Makni, Marina Marcet-Houben, David Martínez-Torres, Camille Meslin, Nicolas Montagné, Nancy A. Moran, Daciana Papura, Nicolas Parisot, Yvan Rahbé, Mélanie Ribeiro Lopes, Aida Ripoll-Cladellas, Stéphanie Robin, Céline Roques, Pascale Roux, Julio Rozas, Alejandro Sánchez-Gracia, Jose F. Sánchez-Herrero, Didac Santesmasses, Iris Scatoni, Rémy-Félix Serre, Ming Tang, Wenhua Tian, Paul A. Umina, Manuella van Munster, Carole Vincent-Monégat, Joshua Wemmer, Alex C. C. Wilson, Ying Zhang, Chaoyang Zhao, Jing Zhao, Serena Zhao, Xin Zhou, François Delmotte, Denis Tagu

Source: BMC Biology, Vol 18, Iss 1, Pp 1-3 (2020)

Subject Terms: Biology (General), QH301-705.5

File Description: electronic resource

Relation: http://link.springer.com/article/10.1186/s12915-020-00864-7; https://doaj.org/toc/1741-7007

Access URL: https://doaj.org/article/e574fb2a424948c0a55138ef6bcf0c2d

RNA sequencing data for responses to drought stress and/or clubroot infection in developing seeds of Brassica napus

Authors: Grégoire Bianchetti, Vanessa Clouet, Fabrice Legeai, Cécile Baron, Kévin Gazengel, Aurélien Carrillo, Maria J. Manzanares-Dauleux, Julia Buitink, Nathalie Nesi

Source: Data in Brief, Vol 38, Iss , Pp 107392- (2021)

Subject Terms: Oilseed rape, Seed development, Drought stress, Clubroot infection, Plasmodiophora brassicae, RNA-seq, Computer applications to medicine. Medical informatics, R858-859.7, Science (General), Q1-390

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S2352340921006740; https://doaj.org/toc/2352-3409

Access URL: https://doaj.org/article/aa511dc56a7b4650b542bd339ce5a8a2

Big Genes, Small Effectors: Pea Aphid Cassette Effector Families Composed From Miniature Exons

Authors: Matthew Dommel, Jonghee Oh, Jose Carlos Huguet-Tapia, Endrick Guy, Hélène Boulain, Akiko Sugio, Marimuthu Murugan, Fabrice Legeai, Michelle Heck, C. Michael Smith, Frank F. White

Source: Frontiers in Plant Science, Vol 11 (2020)

Subject Terms: pea aphid, Acyrthosiphon pisum, salivary gland, secretion protein, effector protein, gene family, Plant culture, SB1-1110

File Description: electronic resource

Relation: https://www.frontiersin.org/article/10.3389/fpls.2020.01230/full; https://doaj.org/toc/1664-462X

Access URL: https://doaj.org/article/70f7adc5db1c4d7abc7ed582bfe3e836

Characterization and expression profiling of microRNAs in response to plant feeding in two host-plant strains of the lepidopteran pest Spodoptera frugiperda

Authors: Yves Moné, Sandra Nhim, Sylvie Gimenez, Fabrice Legeai, Imène Seninet, Hugues Parrinello, Nicolas Nègre, Emmanuelle d’Alençon

Source: BMC Genomics, Vol 19, Iss 1, Pp 1-15 (2018)

Subject Terms: Adaptation, Phenotypic plasticity, Regulation of gene expression, Insect plant interaction, microRNAs, Biotechnology, TP248.13-248.65, Genetics, QH426-470

File Description: electronic resource

Relation: http://link.springer.com/article/10.1186/s12864-018-5119-6; https://doaj.org/toc/1471-2164

Access URL: https://doaj.org/article/a3cf8a41824a4a8fb958020e83144784

Multi-scale characterization of symbiont diversity in the pea aphid complex through metagenomic approaches

Authors: Cervin Guyomar, Fabrice Legeai, Emmanuelle Jousselin, Christophe Mougel, Claire Lemaitre, Jean-Christophe Simon

Source: Microbiome, Vol 6, Iss 1, Pp 1-21 (2018)

Subject Terms: Host-microbiota interactions, Aphids, Metagenomics, Symbiosis, Phylogeny, Microbial ecology, QR100-130

File Description: electronic resource

Relation: http://link.springer.com/article/10.1186/s40168-018-0562-9; https://doaj.org/toc/2049-2618

Access URL: https://doaj.org/article/b071c8b260df4ac696c8765068f4d305

Dosage compensation and sex-specific epigenetic landscape of the X chromosome in the pea aphid

Authors: Gautier Richard, Fabrice Legeai, Nathalie Prunier-Leterme, Anthony Bretaudeau, Denis Tagu, Julie Jaquiéry, Gaël Le Trionnaire

Source: Epigenetics & Chromatin, Vol 10, Iss 1, Pp 1-17 (2017)

Subject Terms: X chromosome, Dosage compensation, Transcriptomics, Open chromatin, Non-model organism, Pea aphid, Genetics, QH426-470

File Description: electronic resource

Relation: http://link.springer.com/article/10.1186/s13072-017-0137-1; https://doaj.org/toc/1756-8935

Access URL: https://doaj.org/article/a3379b6050be4cc2bd32ba027313cc10

RNA interference identifies domesticated viral genes involved in assembly and trafficking of virus-derived particles in ichneumonid wasps.

Authors: Ange Lorenzi, Marc Ravallec, Magali Eychenne, Véronique Jouan, Stéphanie Robin, Isabelle Darboux, Fabrice Legeai, Anne-Sophie Gosselin-Grenet, Mathieu Sicard, Don Stoltz, Anne-Nathalie Volkoff

Source: PLoS Pathogens, Vol 15, Iss 12, p e1008210 (2019)

Subject Terms: Immunologic diseases. Allergy, RC581-607, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://journals.plos.org/plospathogens/article/file?id=10.1371/journal.ppat.1008210&type=printable; https://doaj.org/toc/1553-7366; https://doaj.org/toc/1553-7374

Access URL: https://doaj.org/article/c932d6959ffc4a208c4b12ba492dad42

Differential Expression of Candidate Salivary Effector Genes in Pea Aphid Biotypes With Distinct Host Plant Specificity

Authors: Hélène Boulain, Fabrice Legeai, Julie Jaquiéry, Endrick Guy, Stéphanie Morlière, Jean-Christophe Simon, Akiko Sugio

Source: Frontiers in Plant Science, Vol 10 (2019)

Subject Terms: host-specificity, transcriptomics, effectors, copy number variation, phytophagous insects, Plant culture, SB1-1110

File Description: electronic resource

Relation: https://www.frontiersin.org/article/10.3389/fpls.2019.01301/full; https://doaj.org/toc/1664-462X

Access URL: https://doaj.org/article/cb71385d9aa445a7878d3b23d3c5f8ac

Author Correction: Chromosomal scale assembly of parasitic wasp genome reveals symbiotic virus colonization

Authors: Jérémy Gauthier, Hélène Boulain, Joke J. F. A. van Vugt, Lyam Baudry, Emma Persyn, Jean-Marc Aury, Benjamin Noel, Anthony Bretaudeau, Fabrice Legeai, Sven Warris, Mohamed A. Chebbi, Géraldine Dubreuil, Bernard Duvic, Natacha Kremer, Philippe Gayral, Karine Musset, Thibaut Josse, Diane Bigot, Christophe Bressac, Sébastien Moreau, Georges Periquet, Myriam Harry, Nicolas Montagné, Isabelle Boulogne, Mahnaz Sabeti-Azad, Martine Maïbèche, Thomas Chertemps, Frédérique Hilliou, David Siaussat, Joëlle Amselem, Isabelle Luyten, Claire Capdevielle-Dulac, Karine Labadie, Bruna Laís Merlin, Valérie Barbe, Jetske G. de Boer, Martial Marbouty, Fernando Luis Cônsoli, Stéphane Dupas, Aurélie Hua-Van, Gaelle Le Goff, Annie Bézier, Emmanuelle Jacquin-Joly, James B. Whitfield, Louise E. M. Vet, Hans M. Smid, Laure Kaiser, Romain Koszul, Elisabeth Huguet, Elisabeth A. Herniou, Jean-Michel Drezen

Source: Communications Biology, Vol 4, Iss 1, Pp 1-1 (2021)

Subject Terms: Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://doaj.org/toc/2399-3642

Access URL: https://doaj.org/article/e088ea9a532e43b9bb4613750e2318e6

Proteo-Trancriptomic Analyses Reveal a Large Expansion of Metalloprotease-Like Proteins in Atypical Venom Vesicles of the Wasp Meteorus pulchricornis (Braconidae)

Authors: Jean-Luc Gatti, Maya Belghazi, Fabrice Legeai, Marc Ravallec, Marie Frayssinet, Stéphanie Robin, Djibril Aboubakar-Souna, Ramasamy Srinivasan, Manuele Tamò, Marylène Poirié, Anne-Nathalie Volkoff

Source: Toxins, Vol 13, Iss 7, p 502 (2021)

Subject Terms: Meteorus pulchricornis, parasitoid wasp, Braconidae, venomics, virus-like particles (VLPs), proteomic, Medicine

File Description: electronic resource

Relation: https://www.mdpi.com/2072-6651/13/7/502; https://doaj.org/toc/2072-6651

Access URL: https://doaj.org/article/f1bfa8c6b87245958f69d83aeff9415a