Ask2Me VarHarmonizer: A Python-Based Tool to Harmonize Variants from Cancer Genetic Testing Reports and Map them to the ClinVar Database

Authors: Liu, Yuxi, Yin, Kanhua, Lamichhane, Basanta, Sandbach, John F., Patel, Gayle, Compagnoni, Gia, Kanak, Richard H., Rosen, Barry, Ondrula, David P., Smith, Linda, Brown, Eric, Gold, Linsey, Whitworth, Pat, App, Colleen, Euhus, David, Semine, Alan, Lyons, S. Dwight, Lazarte, Melford Allan C., Parmigiani, Giovanni, Braun, Danielle, Hughes, Kevin S.

Subject Terms: Quantitative Biology - Quantitative Methods, Quantitative Biology - Genomics

Access URL: http://arxiv.org/abs/1911.08408

Residual cancer burden after neoadjuvant chemotherapy and long-term survival outcomes in breast cancer: a multicentre pooled analysis of 5161 patients

Authors: Adamson, Kathi, Albain, Kathy S., Asare, Adam L., Asare, Smita M., Balassanian, Ron, Beckwith, Heather, Berry, Scott M., Berry, Donald A., Boughey, Judy C., Buxton, Meredith B., Chen, Yunn-Yi, Chen, Beiyun, Chien, A. Jo, Chui, Stephen Y., Clark, Amy S., Clennell, Julia L., Datnow, Brian, DeMichele, Angela M., Duan, Xiuzhen, Edmiston, Kirsten K., Elias, Anthony D., Ellis, Erin D., Esserman, Laura L., Euhus, David M., Fadare, Oluwole, Fan, Fang, Feldman, Michael D, Forero-Torres, Andres, Haley, Barbara B., Han, Hyo S., Harada, Shuko, Haugen, Patricia, Helsten, Teresa, Hirst, Gillian L., Hylton, Nola M., Isaacs, Claudine, Kemmer, Kathleen, Khan, Qamar J., Khazai, Laila, Klein, Molly E., Krings, Gregor, Lang, Julie E., LeBeau, Lauren G., Leyland-Jones, Brian, Liu, Minetta C., Lo, Shelly, Lu, Janice, Magliocco, Anthony, Matthews, Jeffrey B., Melisko, Michelle E., Mhawech-Fauceglia, Paulette, Moulder, Stacy L., Murthy, Rashmi K., Nanda, Rita, Northfelt, Donald W., Ocal, Idris T., Olopade, Olufunmilayo, Pambuccian, Stefan, Paoloni, Melissa, Park, John W., Parker, Barbara A., Perlmutter, Jane, Peterson, Garry, Pusztai, Lajos, Rendi, Mara, Rugo, Hope S., Sahoo, Sunati, Sams, Sharon, Sanil, Ashish, Sattar, Husain, Schwab, Richard B., Singhrao, Ruby, Steeg, Katherine, Stringer-Reasor, Erica, Symmans, W. Fraser, Tawfik, Ossama, Tripathy, Debasish, Troxell, Megan L., van't Veer, Laura J., Venters, Sara J., Vinh, Tuyethoa, Viscusi, Rebecca K., Wallace, Anne M., Wei, Shi, Wilson, Amy, Yau, Christina, Yee, Douglas, Zeck, Jay C., Osdoit, Marie ^*, van der Noordaa, Marieke, Shad, Sonal, Wei, Jane, de Croze, Diane, Hamy, Anne-Sophie, Laé, Marick, Reyal, Fabien, Sonke, Gabe S, Steenbruggen, Tessa G, van Seijen, Maartje, Wesseling, Jelle, Martín, Miguel, del Monte-Millán, Maria, López-Tarruella, Sara, Boughey, Judy C, Goetz, Matthew P, Hoskin, Tanya, Gould, Rebekah, Valero, Vicente, Edge, Stephen B, Abraham, Jean E, Bartlett, John M S, Caldas, Carlos, Dunn, Janet, Earl, Helena, Hayward, Larry, Hiller, Louise, Provenzano, Elena, Sammut, Stephen-John, Thomas, Jeremy S, Cameron, David, Graham, Ashley, Hall, Peter, Mackintosh, Lorna, Godwin, Andrew K, Schwensen, Kelsey, Sharma, Priyanka, DeMichele, Angela M, Cole, Kimberly, Kim, Mi-Ok, van 't Veer, Laura J, Esserman, Laura J, Symmans, W Fraser

Source: In The Lancet Oncology January 2022 23(1):149-160

Breast cancer progression when definitive surgery is delayed

Authors: Alaidy, Ziad, Mohamed, Ahmed, Euhus, David

Source: Breast journal. 27(4):307-313

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100119346043.0x000001&indx=1&recIds=ETOCvdc_100119346043.0x000001

The Association Between Breast Cancer Predisposing Genetic Variants and Multifocal, Multicentric Breast Cancer.

Authors: Vasigh, Mahtab, Mohamed, Ahmed, Jacobs, Lisa, Lange, Julie, Camp, Melissa, Sun, Bonnie, Wright, Pamela, O'Donnell, Maureen, Tran, Hanh-Tam, Sogunro, Olutayo, Habibi, Mehran, Johnston, Fabian, Euhus, David

Source: Annals of Surgical Oncology: An Oncology Journal for Surgeons; Dec2024, Vol. 31 Issue 13, p8891-8899, 9p

De-escalating indications for excision when breast core needle biopsy returns fibroepithelial lesion—not further characterized.

Authors: Soleimani, Tahereh, Euhus, David, Sogunro, Olutayo, Cope, Leslie, Janjua, Mahin, Vasigh, Mahtab, Jacobs, Lisa K.

Source: Breast Cancer Research & Treatment; Oct2024, Vol. 207 Issue 3, p561-568, 8p

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Surgeon Re-Excision Rates after Breast-Conserving Surgery: A Measure of Low-Value Care

Authors: Kaczmarski, Katerina, Wang, Peiqi, Gilmore, Richard, Overton, Heidi N., Euhus, David M., Jacobs, Lisa K., Habibi, Mehran, Camp, Melissa, Weiss, Matthew J., Makary, Martin A.

Source: In Journal of the American College of Surgeons April 2019 228(4):504-512

Legacy Genetic Testing Results for Cancer Susceptibility: How Common are Conflicting Classifications in a Large Variant Dataset from Multiple Practices?

Authors: Yin, Kanhua, Liu, Yuxi, Lamichhane, Basanta, Sandbach, John F., Patel, Gayle, Compagnoni, Gia, Kanak, Richard H., Rosen, Barry, Ondrula, David P., Smith, Linda, Brown, Eric, Gold, Linsey, Whitworth, Pat, App, Colleen, Euhus, David, Semine, Alan, Dwight Lyons, S., Lazarte, Melford Allan C., Parmigiani, Giovanni, Braun, Danielle, Hughes, Kevin S.

Source: Annals of surgical oncology. 27(7):2212-2220

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100168245284.0x000001&indx=1&recIds=ETOCvdc_100168245284.0x000001

Management of the clinically positive axilla

Authors: Euhus, David M.

Source: Breast journal. 26(1):35-38

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100150369816.0x000001&indx=1&recIds=ETOCvdc_100150369816.0x000001

Germline Genetic Testing: What the Breast Surgeon Needs to Know

Authors: Plichta, Jennifer K., Sebastian, Molly L., Smith, Linda A., Menendez, Carolyn S., Johnson, Anita T., Bays, Sussan M., Euhus, David M., Clifford, Edward J., Jalali, Mena, Kurtzman, Scott H., Taylor, Walton A., Hughes, Kevin S.

Source: Annals of surgical oncology. 26(7):2184-2190

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100119725077.0x000001&indx=1&recIds=ETOCvdc_100119725077.0x000001

Consensus Guidelines on Genetic` Testing for Hereditary Breast Cancer from the American Society of Breast Surgeons

Authors: Manahan, Eric R., Kuerer, Henry M., Sebastian, Molly, Hughes, Kevin S., Boughey, Judy C., Euhus, David M., Boolbol, Susan K., Taylor, Walton A.

Source: Annals of surgical oncology. 26(10):3025-3031

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100118555875.0x000001&indx=1&recIds=ETOCvdc_100118555875.0x000001

Change in health‐related quality of life in older women after diagnosis of a small breast cancer

Authors: Euhus, David M., Addae, Jamin K., Snyder, Claire F., Canner, Joseph K.

Source: Cancer. 125(11):1807-1814

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100085855990.0x000001&indx=1&recIds=ETOCvdc_100085855990.0x000001

Survival and Disease Recurrence Rates among Breast Cancer Patients following Mastectomy with or without Breast Reconstruction

Authors: Siotos, Charalampos, Naska, Androniki, Bello, Ricardo J., Uzosike, Akachimere, Orfanos, Philippos, Euhus, David M., Manahan, Michele A., Cooney, Carisa M., Lagiou, Pagona, Rosson, Gedge D.

Source: Plastic and reconstructive surgery. 144(2):169e-177e

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100175158141.0x000001&indx=1&recIds=ETOCvdc_100175158141.0x000001

The Use of Tumescent Technique in Mastectomy and Related Complications: A Meta-Analysis

Authors: Siotos, Charalampos, Aston, Jeffrey W., Euhus, David M., Seal, Stella M., Manahan, Michele A., Rosson, Gedge D.

Source: Plastic and reconstructive surgery. 143(1):39-48

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100175152033.0x000001&indx=1&recIds=ETOCvdc_100175152033.0x000001

HER-2 Gene Amplification Can Be Acquired as Breast Cancer Progresses

Authors: Meng, Songdong, Tripathy, Debasish, Shete, Sanjay, Ashfaq, Raheela, Haley, Barbara, Perkins, Steve, Beitsch, Peter, Khan, Amanullah, Euhus, David, Osborne, Cynthia, Frenkel, Eugene, Hoover, Susan, Leitch, Marilyn, Clifford, Edward, Vitetta, Ellen, Morrison, Larry, Herlyn, Dorothee, Fleming, Timothy, Fehm, Tanja, Tucker, Thomas, Lane, Nancy, Wang, Jianqiang, Uhr, Jonathan

Source: Proceedings of the National Academy of Sciences of the United States of America, 2004 Jun . 101(25), 9393-9398.

Access URL: https://www.jstor.org/stable/3372661

Invasive Breast Cancer Preferably and Predominantly Occurs at the Interface Between Fibroglandular and Adipose Tissue

Authors: Zhu, Wenlian, Harvey, Susan, Macura, Katarzyna J., Euhus, David M., Artemov, Dmitri

Source: In Clinical Breast Cancer February 2017 17(1):e11-e18

A comparison of trends in operative approach and postoperative outcomes for colorectal cancer surgery

Authors: Addae, Jamin K., Gani, Faiz, Fang, Sandy Y., Wick, Elizabeth C., Althumairi, Azah A., Efron, Jonathan E., Canner, Joseph K., Euhus, David M., Schneider, Eric B.

Source: In Journal of Surgical Research February 2017 208:111-120

Detection and Characterization of Carcinoma Cells in the Blood

Authors: Racila, Emilian, Euhus, David, Weiss, Arthur J., Rao, Chandra, McConnell, John, Uhr, Jonathan W.

Source: Proceedings of the National Academy of Sciences of the United States of America, 1998 Apr . 95(8), 4589-4594.

Access URL: https://www.jstor.org/stable/44941

Why Breast Cancer Risk Models Fail: The Case of Lobular Carcinoma In Situ

Authors: Euhus, David M.

Source: Annals of surgical oncology. 27(3):627-629

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100161823323.0x000001&indx=1&recIds=ETOCvdc_100161823323.0x000001

Dose-dependent effect of mammographic breast density on the risk of contralateral breast cancer

Authors: Chowdhury, Marzana, Euhus, David, O'Donnell, Maureen, Onega, Tracy, Choudhary, Pankaj K., Biswas, Swati

Source: Breast cancer research and treatment. 170(1):143-148

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100127574871.0x000001&indx=1&recIds=ETOCvdc_100127574871.0x000001