Major depletion of insulin sensitivity-associated taxa in the gut microbiome of persons living with HIV controlled by antiretroviral drugs

Authors: Eugeni Belda, Jacqueline Capeau, Jean-Daniel Zucker, Emmanuelle Le Chatelier, Nicolas Pons, Florian Plaza Oñate, Benoit Quinquis, Rohia Alili, Soraya Fellahi, Christine Katlama, Karine Clément, Bruno Fève, Stéphane Jaureguiberry, Cécile Goujard, Olivier Lambotte, Joël Doré, Edi Prifti, Jean-Philippe Bastard

Source: BMC Medical Genomics, Vol 17, Iss 1, Pp 1-21 (2024)

Subject Terms: HIV, Human gut microbiome, Metabolic status, Machine learning, Internal medicine, RC31-1245, Genetics, QH426-470

File Description: electronic resource

Relation: https://doaj.org/toc/1755-8794

Access URL: https://doaj.org/article/7ee4c2305c564879b8a953569a27e899

Oral histidine affects gut microbiota and MAIT cells improving glycemic control in type 2 diabetes patients

Authors: Moritz V. Warmbrunn, Ilias Attaye, Judith Aron-Wisnewsky, Elena Rampanelli, Eduard W.J. van der Vossen, Youling Hao, Annefleur Koopen, Per-Olof Bergh, Daniela Stols-Gonçalves, Nadia Mohamed, Marleen Kemper, Xanthe Verdoes, Koen Wortelboer, Mark Davids, Eugeni Belda, Sébastien André, Stanley Hazen, Karine Clement, Bert Groen, Daniel H. van Raalte, Hilde Herrema, Fredrik Backhed, Max Nieuwdorp

Source: Gut Microbes, Vol 16, Iss 1 (2024)

Subject Terms: Microbiome, histidine, insulin resistance, monocytes, diabetes, Diseases of the digestive system. Gastroenterology, RC799-869

File Description: electronic resource

Relation: https://doaj.org/toc/1949-0976; https://doaj.org/toc/1949-0984

Access URL: https://doaj.org/article/b848827631a747d88b5b747a6c0931c9

Comparative analysis of the duodenojejunal microbiome with the oral and fecal microbiomes reveals its stronger association with obesity and nutrition

Authors: Emilie Steinbach, Eugeni Belda, Rohia Alili, Solia Adriouch, Charlène J. G. Dauriat, Gianfranco Donatelli, Jean-Loup Dumont, Filippo Pacini, Thierry Tuszynski, Véronique Pelloux, Flavien Jacques, Laura Creusot, Emavieve Coles, Paul Taillandier, Marta Vazquez Gomez, Davide Masi, Véronique Mateo, Sébastien André, Melissa Kordahi, Christine Rouault, Jean-Daniel Zucker, Harry Sokol, Laurent Genser, Benoit Chassaing, Tiphaine Le Roy, Karine Clément

Source: Gut Microbes, Vol 16, Iss 1 (2024)

Subject Terms: Small intestine microbiota, duodenojejunal microbiome, oral microbiome, microbiota, microbiome, nutrition, Diseases of the digestive system. Gastroenterology, RC799-869

File Description: electronic resource

Relation: https://doaj.org/toc/1949-0976; https://doaj.org/toc/1949-0984

Access URL: https://doaj.org/article/a975c65b62d040cea80ba072004a767f

Functional alterations and predictive capacity of gut microbiome in type 2 diabetes

Authors: Nihar Ranjan Dash, Mohammad T. Al Bataineh, Rohia Alili, Habiba Al Safar, Noura Alkhayyal, Edi Prifti, Jean-Daniel Zucker, Eugeni Belda, Karine Clément

Source: Scientific Reports, Vol 13, Iss 1, Pp 1-12 (2023)

Subject Terms: Medicine, Science

File Description: electronic resource

Relation: https://doaj.org/toc/2045-2322

Access URL: https://doaj.org/article/9a526ce46bae4b2e90c182375525f374

Evidence of a causal and modifiable relationship between kidney function and circulating trimethylamine N-oxide

Authors: Petros Andrikopoulos, Judith Aron-Wisnewsky, Rima Chakaroun, Antonis Myridakis, Sofia K. Forslund, Trine Nielsen, Solia Adriouch, Bridget Holmes, Julien Chilloux, Sara Vieira-Silva, Gwen Falony, Joe-Elie Salem, Fabrizio Andreelli, Eugeni Belda, Julius Kieswich, Kanta Chechi, Francesc Puig-Castellvi, Mickael Chevalier, Emmanuelle Le Chatelier, Michael T. Olanipekun, Lesley Hoyles, Renato Alves, Gerard Helft, Richard Isnard, Lars Køber, Luis Pedro Coelho, Christine Rouault, Dominique Gauguier, Jens Peter Gøtze, Edi Prifti, Philippe Froguel, The MetaCardis Consortium, Jean-Daniel Zucker, Fredrik Bäckhed, Henrik Vestergaard, Torben Hansen, Jean-Michel Oppert, Matthias Blüher, Jens Nielsen, Jeroen Raes, Peer Bork, Muhammad M. Yaqoob, Michael Stumvoll, Oluf Pedersen, S. Dusko Ehrlich, Karine Clément, Marc-Emmanuel Dumas

Source: Nature Communications, Vol 14, Iss 1, Pp 1-18 (2023)

Subject Terms: Science

File Description: electronic resource

Relation: https://doaj.org/toc/2041-1723

Access URL: https://doaj.org/article/12ff1d1de8474b4894451345fa26b4ed

Protein supplementation changes gut microbial diversity and derived metabolites in subjects with type 2 diabetes

Authors: Ilias Attaye, Pierre Bel Lassen, Solia Adriouch, Emilie Steinbach, Rafael Patiño-Navarrete, Mark Davids, Rohia Alili, Flavien Jacques, Sara Benzeguir, Eugeni Belda, Ina Nemet, James T. Anderson, Laure Alexandre-Heymann, Arno Greyling, Etienne Larger, Stanley L. Hazen, Sophie L. van Oppenraaij, Valentina Tremaroli, Katharina Beck, Per-Olof Bergh, Fredrik Bäckhed, Suzan P.M. ten Brincke, Hilde Herrema, Albert K. Groen, Sara-Joan Pinto-Sietsma, Karine Clément, Max Nieuwdorp

Source: iScience, Vol 26, Iss 8, Pp 107471- (2023)

Subject Terms: Dietary supplement, Health sciences, Human metabolism, Microbiome, Science

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S2589004223015481; https://doaj.org/toc/2589-0042

Access URL: https://doaj.org/article/0078ac92a6de49509fac4a5b45e06330

The human gut microbiota contributes to type-2 diabetes non-resolution 5-years after Roux-en-Y gastric bypass

Authors: Jean Debédat, Tiphaine Le Roy, Lise Voland, Eugeni Belda, Rohia Alili, Solia Adriouch, Pierre Bel Lassen, Kazuyuki Kasahara, Evan Hutchison, Laurent Genser, Licia Torres, Camille Gamblin, Christine Rouault, Jean-Daniel Zucker, Nathalie Kapel, Christine Poitou, Geneviève Marcelin, Federico E. Rey, Judith Aron-Wisnewsky, Karine Clément

Source: Gut Microbes, Vol 14, Iss 1 (2022)

Subject Terms: Microbiota, bariatric surgery, diabetes remission, bacteroides, fecal matter transplantation, relapse, Diseases of the digestive system. Gastroenterology, RC799-869

File Description: electronic resource

Relation: https://doaj.org/toc/1949-0976; https://doaj.org/toc/1949-0984

Access URL: https://doaj.org/article/654258ef9e724ebcac21d473da8919a3

Protein supplementation during an energy-restricted diet induces visceral fat loss and gut microbiota amino acid metabolism activation: a randomized trial

Authors: Pierre Bel Lassen, Eugeni Belda, Edi Prifti, Maria Carlota Dao, Florian Specque, Corneliu Henegar, Laure Rinaldi, Xuedan Wang, Sean P. Kennedy, Jean-Daniel Zucker, Wim Calame, Benoît Lamarche, Sandrine P. Claus, Karine Clément

Source: Scientific Reports, Vol 11, Iss 1, Pp 1-13 (2021)

Subject Terms: Medicine, Science

File Description: electronic resource

Relation: https://doaj.org/toc/2045-2322

Access URL: https://doaj.org/article/60260b2442fa442b9a8a5900f4157062

Gut microbiota changes after metabolic surgery in adult diabetic patients with mild obesity: a randomised controlled trial

Authors: Eva Lau, Eugeni Belda, Paul Picq, Davide Carvalho, Manuel Ferreira-Magalhães, Maria Manuel Silva, Isaac Barroso, Flora Correia, Cidália Pina Vaz, Isabel Miranda, Adelino Barbosa, Karine Clément, Joel Doré, Paula Freitas, Edi Prifti

Source: Diabetology & Metabolic Syndrome, Vol 13, Iss 1, Pp 1-15 (2021)

Subject Terms: Diabetes mellitus, Insulin resistance, Microbiome, Roux-en-Y gastric bypass, Weight loss, Nutritional diseases. Deficiency diseases, RC620-627

File Description: electronic resource

Relation: https://doaj.org/toc/1758-5996

Access URL: https://doaj.org/article/bb4eebebeab746c49b3c477bee9b8f27

Imidazole propionate is increased in diabetes and associated with dietary patterns and altered microbial ecology

Authors: Antonio Molinaro, Pierre Bel Lassen, Marcus Henricsson, Hao Wu, Solia Adriouch, Eugeni Belda, Rima Chakaroun, Trine Nielsen, Per-Olof Bergh, Christine Rouault, Sébastien André, Florian Marquet, Fabrizio Andreelli, Joe-Elie Salem, Karen Assmann, Jean-Philippe Bastard, Sofia Forslund, Emmanuelle Le Chatelier, Gwen Falony, Nicolas Pons, Edi Prifti, Benoit Quinquis, Hugo Roume, Sara Vieira-Silva, Tue H. Hansen, Helle Krogh Pedersen, Christian Lewinter, Nadja B. Sønderskov, The MetaCardis Consortium, Lars Køber, Henrik Vestergaard, Torben Hansen, Jean-Daniel Zucker, Pilar Galan, Marc-Emmanuel Dumas, Jeroen Raes, Jean-Michel Oppert, Ivica Letunic, Jens Nielsen, Peer Bork, S. Dusko Ehrlich, Michael Stumvoll, Oluf Pedersen, Judith Aron-Wisnewsky, Karine Clément, Fredrik Bäckhed

Source: Nature Communications, Vol 11, Iss 1, Pp 1-10 (2020)

Subject Terms: Science

File Description: electronic resource

Relation: https://doaj.org/toc/2041-1723

Access URL: https://doaj.org/article/bdbb435b4d944496b157432e614c287b

Revealing links between gut microbiome and its fungal community in Type 2 Diabetes Mellitus among Emirati subjects: A pilot study

Authors: Mohammad Tahseen Al Bataineh, Nihar Ranjan Dash, Pierre Bel Lassen, Bayan Hassan Banimfreg, Aml Mohamed Nada, Eugeni Belda, Karine Clément

Source: Scientific Reports, Vol 10, Iss 1, Pp 1-11 (2020)

Subject Terms: Medicine, Science

File Description: electronic resource

Relation: https://doaj.org/toc/2045-2322

Access URL: https://doaj.org/article/7242a4e215374fefb3f935dbc49797a9

De novo profiling of RNA viruses in Anopheles malaria vector mosquitoes from forest ecological zones in Senegal and Cambodia

Authors: Eugeni Belda, Ferdinand Nanfack-Minkeu, Karin Eiglmeier, Guillaume Carissimo, Inge Holm, Mawlouth Diallo, Diawo Diallo, Amélie Vantaux, Saorin Kim, Igor V. Sharakhov, Kenneth D. Vernick

Source: BMC Genomics, Vol 20, Iss 1, Pp 1-27 (2019)

Subject Terms: Virus genome assembly, Insect specific virus, RNA virus, Anopheles, Malaria vector, Virome, Biotechnology, TP248.13-248.65, Genetics, QH426-470

File Description: electronic resource

Relation: http://link.springer.com/article/10.1186/s12864-019-6034-1; https://doaj.org/toc/1471-2164

Access URL: https://doaj.org/article/a790401eb84143c282c75be57deec7e7

Comprehensive Wet-Bench and Bioinformatics Workflow for Complex Microbiota Using Oxford Nanopore Technologies

Authors: Christoph Ammer-Herrmenau, Nina Pfisterer, Tim van den Berg, Ivana Gavrilova, Ahmad Amanzada, Shiv K. Singh, Alaa Khalil, Rohia Alili, Eugeni Belda, Karine Clement, Ahmed Abd El Wahed, ElSagad Eltayeb Gady, Martin Haubrock, Tim Beißbarth, Volker Ellenrieder, Albrecht Neesse

Source: mSystems, Vol 6, Iss 4 (2021)

Subject Terms: Microbiology, QR1-502

File Description: electronic resource

Relation: https://doaj.org/toc/2379-5077

Access URL: https://doaj.org/article/9368c7ba407642fabca0ad62801aa4de

Comprehensive Ecological and Geographic Characterization of Eukaryotic and Prokaryotic Microbiomes in African Anopheles

Authors: Eugeni Belda Cuesta, Boubacar Coulibaly, Tullu Bukhari, Karin Eiglmeier, Raymond Kone, Mamadou B. Coulibaly, Soumanaba Zongo, Mamadou Barry, Awa Gneme, Wamdaogo M. Guelbeogo, Abdoul H. Beavogui, Sekou F. Traore, N’Fale Sagnon, Kenneth D. Vernick, Michelle M. Riehle

Source: Frontiers in Microbiology, Vol 12 (2021)

Subject Terms: mosquito, Anopheles, insect microbiome, eukaryotic microbiology, commensalism, insect immunity, Microbiology, QR1-502

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fmicb.2021.635772/full; https://doaj.org/toc/1664-302X

Access URL: https://doaj.org/article/5c7d3c3f7345432c8a3f7a4144afb913

Highly focused transcriptional response of Anopheles coluzzii to O’nyong nyong arbovirus during the primary midgut infection

Authors: Guillaume Carissimo, Adrien Pain, Eugeni Belda, Kenneth D. Vernick

Source: BMC Genomics, Vol 19, Iss 1, Pp 1-12 (2018)

Subject Terms: Arbovirus, Insect vectors, Insect immunity, Host–pathogen interactions, Innate immunity, Malaria, Biotechnology, TP248.13-248.65, Genetics, QH426-470

File Description: electronic resource

Relation: http://link.springer.com/article/10.1186/s12864-018-4918-0; https://doaj.org/toc/1471-2164

Access URL: https://doaj.org/article/e9add3b2ed6b49d7b155bf6f55642e65

Characterization of the Gut Microbiota in Individuals with Overweight or Obesity during a Real-World Weight Loss Dietary Program: A Focus on the Bacteroides 2 Enterotype

Authors: Rohia Alili, Eugeni Belda, Odile Fabre, Véronique Pelloux, Nils Giordano, Rémy Legrand, Pierre Bel Lassen, Timothy D. Swartz, Jean-Daniel Zucker, Karine Clément

Source: Biomedicines, Vol 10, Iss 1, p 16 (2021)

Subject Terms: obesity, gut microbiota, weight loss, Bacteroides 2 enterotype, real-world dietary intervention, nanopore technology, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://www.mdpi.com/2227-9059/10/1/16; https://doaj.org/toc/2227-9059

Access URL: https://doaj.org/article/96c9e454d63547de89781e58f83d39c8

Preferential suppression of Anopheles gambiae host sequences allows detection of the mosquito eukaryotic microbiome

Authors: Eugeni Belda, Boubacar Coulibaly, Abdrahamane Fofana, Abdoul H. Beavogui, Sekou F. Traore, Daryl M. Gohl, Kenneth D. Vernick, Michelle M. Riehle

Source: Scientific Reports, Vol 7, Iss 1, Pp 1-13 (2017)

Subject Terms: Medicine, Science

File Description: electronic resource

Relation: https://doaj.org/toc/2045-2322

Access URL: https://doaj.org/article/8948aaa28b2c4b22967bf9e41db7bbd0

Leucine-Rich Immune Factor APL1 Is Associated With Specific Modulation of Enteric Microbiome Taxa in the Asian Malaria Mosquito Anopheles stephensi

Authors: Christian Mitri, Emmanuel Bischoff, Eugeni Belda Cuesta, Stevenn Volant, Amine Ghozlane, Karin Eiglmeier, Inge Holm, Constentin Dieme, Emma Brito-Fravallo, Wamdaogo M. Guelbeogo, N’Fale Sagnon, Michelle M. Riehle, Kenneth D. Vernick

Source: Frontiers in Microbiology, Vol 11 (2020)

Subject Terms: mosquito, insect immunity, microbiome, leucine-rich repeat, commensalism, Microbiology, QR1-502

File Description: electronic resource

Relation: https://www.frontiersin.org/article/10.3389/fmicb.2020.00306/full; https://doaj.org/toc/1664-302X

Access URL: https://doaj.org/article/781564ecf0d849379377e4c764bd174e

Author Correction: Revealing links between gut microbiome and its fungal community in Type 2 Diabetes Mellitus among Emirati subjects: A pilot study

Authors: Mohammad Tahseen Al Bataineh, Nihar Ranjan Dash, Pierre Bel Lassen, Bayan Hassan Banimfreg, Aml Mohamed Nada, Eugeni Belda, Karine Clément

Source: Scientific Reports, Vol 11, Iss 1, Pp 1-1 (2021)

Subject Terms: Medicine, Science

File Description: electronic resource

Relation: https://doaj.org/toc/2045-2322

Access URL: https://doaj.org/article/dbb3b5d3b0104bcb97255c8f982b32d4

Publisher Correction: Revealing links between gut microbiome and its fungal community in Type 2 Diabetes Mellitus among Emirati subjects: A pilot study

Authors: Mohammad Tahseen Al Bataineh, Nihar Ranjan Dash, Pierre Bel Lassen, Bayan Hassan Banimfreg, Aml Mohamed Nada, Eugeni Belda, Karine Clément

Source: Scientific Reports, Vol 11, Iss 1, Pp 1-1 (2021)

Subject Terms: Medicine, Science

File Description: electronic resource

Relation: https://doaj.org/toc/2045-2322

Access URL: https://doaj.org/article/85ccb7fd1669428b88d27eeab6fa4301