Federated Learning Enables Big Data for Rare Cancer Boundary Detection

Authors: Pati, Sarthak, Baid, Ujjwal, Edwards, Brandon, Sheller, Micah, Wang, Shih-Han, Reina, G Anthony, Foley, Patrick, Gruzdev, Alexey, Karkada, Deepthi, Davatzikos, Christos, Sako, Chiharu, Ghodasara, Satyam, Bilello, Michel, Mohan, Suyash, Vollmuth, Philipp, Brugnara, Gianluca, Preetha, Chandrakanth J, Sahm, Felix, Maier-Hein, Klaus, Zenk, Maximilian, Bendszus, Martin, Wick, Wolfgang, Calabrese, Evan, Rudie, Jeffrey, Villanueva-Meyer, Javier, Cha, Soonmee, Ingalhalikar, Madhura, Jadhav, Manali, Pandey, Umang, Saini, Jitender, Garrett, John, Larson, Matthew, Jeraj, Robert, Currie, Stuart, Frood, Russell, Fatania, Kavi, Huang, Raymond Y, Chang, Ken, Balana, Carmen, Capellades, Jaume, Puig, Josep, Trenkler, Johannes, Pichler, Josef, Necker, Georg, Haunschmidt, Andreas, Meckel, Stephan, Shukla, Gaurav, Liem, Spencer, Alexander, Gregory S, Lombardo, Joseph, Palmer, Joshua D, Flanders, Adam E, Dicker, Adam P, Sair, Haris I, Jones, Craig K, Venkataraman, Archana, Jiang, Meirui, So, Tiffany Y, Chen, Cheng, Heng, Pheng Ann, Dou, Qi, Kozubek, Michal, Lux, Filip, Michálek, Jan, Matula, Petr, Keřkovský, Miloš, Kopřivová, Tereza, Dostál, Marek, Vybíhal, Václav, Vogelbaum, Michael A, Mitchell, J Ross, Farinhas, Joaquim, Maldjian, Joseph A, Yogananda, Chandan Ganesh Bangalore, Pinho, Marco C, Reddy, Divya, Holcomb, James, Wagner, Benjamin C, Ellingson, Benjamin M, Cloughesy, Timothy F, Raymond, Catalina, Oughourlian, Talia, Hagiwara, Akifumi, Wang, Chencai, To, Minh-Son, Bhardwaj, Sargam, Chong, Chee, Agzarian, Marc, Falcão, Alexandre Xavier, Martins, Samuel B, Teixeira, Bernardo C A, Sprenger, Flávia, Menotti, David, Lucio, Diego R, LaMontagne, Pamela, Marcus, Daniel, Wiestler, Benedikt, Kofler, Florian, Ezhov, Ivan, Metz, Marie, Jain, Rajan, Lee, Matthew, Lui, Yvonne W, McKinley, Richard, Slotboom, Johannes, Radojewski, Piotr, Meier, Raphael, Wiest, Roland, Murcia, Derrick, Fu, Eric, Haas, Rourke, Thompson, John, Ormond, David Ryan, Badve, Chaitra, Sloan, Andrew E, Vadmal, Vachan, Waite, Kristin, Colen, Rivka R, Pei, Linmin, Ak, Murat, Srinivasan, Ashok, Bapuraj, J Rajiv, Rao, Arvind, Wang, Nicholas, Yoshiaki, Ota, Moritani, Toshio, Turk, Sevcan, Lee, Joonsang, Prabhudesai, Snehal, Morón, Fanny, Mandel, Jacob, Kamnitsas, Konstantinos, Glocker, Ben, Dixon, Luke V M, Williams, Matthew, Zampakis, Peter, Panagiotopoulos, Vasileios, Tsiganos, Panagiotis, Alexiou, Sotiris, Haliassos, Ilias, Zacharaki, Evangelia I, Moustakas, Konstantinos, Kalogeropoulou, Christina, Kardamakis, Dimitrios M, Choi, Yoon Seong, Lee, Seung-Koo, Chang, Jong Hee, Ahn, Sung Soo, Luo, Bing, Poisson, Laila, Wen, Ning, Tiwari, Pallavi, Verma, Ruchika, Bareja, Rohan, Yadav, Ipsa, Chen, Jonathan, Kumar, Neeraj, Smits, Marion, van der Voort, Sebastian R, Alafandi, Ahmed, Incekara, Fatih, Wijnenga, Maarten MJ, Kapsas, Georgios, Gahrmann, Renske, Schouten, Joost W, Dubbink, Hendrikus J, Vincent, Arnaud JPE, Bent, Martin J van den, French, Pim J, Klein, Stefan, Yuan, Yading, Sharma, Sonam, Tseng, Tzu-Chi, Adabi, Saba, Niclou, Simone P, Keunen, Olivier, Hau, Ann-Christin, Vallières, Martin, Fortin, David, Lepage, Martin, Landman, Bennett, Ramadass, Karthik, Xu, Kaiwen, Chotai, Silky, Chambless, Lola B, Mistry, Akshitkumar, Thompson, Reid C, Gusev, Yuriy, Bhuvaneshwar, Krithika, Sayah, Anousheh, Bencheqroun, Camelia, Belouali, Anas, Madhavan, Subha, Booth, Thomas C, Chelliah, Alysha, Modat, Marc, Shuaib, Haris, Dragos, Carmen, Abayazeed, Aly, Kolodziej, Kenneth, Hill, Michael, Abbassy, Ahmed, Gamal, Shady, Mekhaimar, Mahmoud, Qayati, Mohamed, Reyes, Mauricio, Park, Ji Eun, Yun, Jihye, Kim, Ho Sung, Mahajan, Abhishek, Muzi, Mark, Benson, Sean, Beets-Tan, Regina G H, Teuwen, Jonas, Herrera-Trujillo, Alejandro, Trujillo, Maria, Escobar, William, Abello, Ana, Bernal, Jose, Gómez, Jhon, Choi, Joseph, Baek, Stephen, Kim, Yusung, Ismael, Heba, Allen, Bryan, Buatti, John M, Kotrotsou, Aikaterini, Li, Hongwei, Weiss, Tobias, Weller, Michael, Bink, Andrea, Pouymayou, Bertrand, Shaykh, Hassan F, Saltz, Joel, Prasanna, Prateek, Shrestha, Sampurna, Mani, Kartik M, Payne, David, Kurc, Tahsin, Pelaez, Enrique, Franco-Maldonado, Heydy, Loayza, Francis, Quevedo, Sebastian, Guevara, Pamela, Torche, Esteban, Mendoza, Cristobal, Vera, Franco, Ríos, Elvis, López, Eduardo, Velastin, Sergio A, Ogbole, Godwin, Oyekunle, Dotun, Odafe-Oyibotha, Olubunmi, Osobu, Babatunde, Shu'aibu, Mustapha, Dorcas, Adeleye, Soneye, Mayowa, Dako, Farouk, Simpson, Amber L, Hamghalam, Mohammad, Peoples, Jacob J, Hu, Ricky, Tran, Anh, Cutler, Danielle, Moraes, Fabio Y, Boss, Michael A, Gimpel, James, Veettil, Deepak Kattil, Schmidt, Kendall, Bialecki, Brian, Marella, Sailaja, Price, Cynthia, Cimino, Lisa, Apgar, Charles, Shah, Prashant, Menze, Bjoern, Barnholtz-Sloan, Jill S, Martin, Jason, Bakas, Spyridon

Subject Terms: Computer Science - Machine Learning, Electrical Engineering and Systems Science - Image and Video Processing

Access URL: http://arxiv.org/abs/2204.10836

Synthesizing MR Image Contrast Enhancement Using 3D High-resolution ConvNets

Authors: Chen, Chao, Raymond, Catalina, Speier, Bill, Jin, Xinyu, Cloughesy, Timothy F., Enzmann, Dieter, Ellingson, Benjamin M., Arnold, Corey W.

Subject Terms: Electrical Engineering and Systems Science - Image and Video Processing, Computer Science - Computer Vision and Pattern Recognition

Access URL: http://arxiv.org/abs/2104.01592

PET-based response assessment criteria for diffuse gliomas (PET RANO 1.0): a report of the RANO group

Authors: Albert, Nathalie L, Galldiks, Norbert, Ellingson, Benjamin M, van den Bent, Martin J, Chang, Susan M, Cicone, Francesco, de Groot, John, Koh, Eng-Siew, Law, Ian, Le Rhun, Emilie, Mair, Maximilian J, Minniti, Giuseppe, Rudà, Roberta, Scott, Andrew M, Short, Susan C, Smits, Marion, Suchorska, Bogdana, Tolboom, Nelleke, Traub-Weidinger, Tatjana, Tonn, Joerg-Christian, Verger, Antoine, Weller, Michael, Wen, Patrick Y, Preusser, Matthias ^*

Source: In The Lancet Oncology January 2024 25(1):e29-e41

Prospective, randomized, multicenter clinical trial evaluating longitudinal changes in brain function and microstructure in first-episode schizophrenia patients treated with long-acting injectable paliperidone palmitate versus oral antipsychotics

Authors: Wang, Chencai, Tishler, Todd A., Oughourlian, Talia, Nuechterlein, Keith H., de la Fuente-Sandoval, Camilo, Ellingson, Benjamin M.

Source: Schizophrenia research. 255:222-232

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100195217652.0x000001&indx=1&recIds=ETOCvdc_100195217652.0x000001

Harnessing imaging tools to guide immunotherapy trials: summary from the National Cancer Institute Cancer Imaging Steering Committee workshop

Authors: Shankar, Lalitha K, Schöder, Heiko, Sharon, Elad, Wolchok, Jedd, Knopp, Michael V, Wahl, Richard L, Ellingson, Benjamin M, Hall, Nathan C, Yaffe, Martin J, Towbin, Alexander J, Farwell, Michael D, Pryma, Daniel, Poussaint, Tina Young, Wright, Chadwick L, Schwartz, Lawrence, Harisinghani, Mukesh, Mahmood, Umar, Wu, Anna M, Leung, David, de Vries, Elisabeth G E, Tang, Ying, Beach, Gillian, Reeves, Steven A

Source: Lancet oncology. 24(3):e133-e143

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100191400864.0x000001&indx=1&recIds=ETOCvdc_100191400864.0x000001

Reproducible Microstructural Changes in the Brain Associated With the Presence and Severity of Urologic Chronic Pelvic Pain Syndrome (UCPPS): A 3-Year Longitudinal Diffusion Tensor Imaging Study From the MAPP Network

Authors: Wang, Chencai, Kutch, Jason J., Labus, Jennifer S., Yang, Claire C., Harris, Richard E, Mayer, Emeran A., Ellingson, Benjamin M.

Source: Journal of pain. 24(4):627-642

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100186892687.0x000001&indx=1&recIds=ETOCvdc_100186892687.0x000001

Sex-specific brain microstructural reorganization in irritable bowel syndrome

Authors: Labus, Jennifer S., Wang, Chencai, Mayer, Emeran A., Gupta, Arpana, Oughourlian, Talia, Kilpatrick, Lisa, Tillisch, Kirsten, Chang, Lin, Naliboff, Bruce, Ellingson, Benjamin M.

Source: Pain. 164(2):292-304

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100178085070.0x000001&indx=1&recIds=ETOCvdc_100178085070.0x000001

A framework for standardised tissue sampling and processing during resection of diffuse intracranial glioma: joint recommendations from four RANO groups

Authors: Aldape, Kenneth, Baehring, Joachim M., Bello, Lorenzo, Brat, Daniel J., Cahill, Daniel P., Chung, Caroline, Colman, Howard, Dietrich, Jorg, Drummond, Katharine, Esquenazi, Yoshua, Gerstner, Elizabeth R., Furtner, Julia, Garibotto, Valentina, Kaufmann, Timothy J., Komori, Takashi, Kotecha, Rupesh, Liau, Linda M., Lupo, Janine M., Minniti, Giuseppe, Narita, Yoshitaka, Niyazi, Maximilian, Perry, Arie, Preusser, Matthias, Rudà, Roberta, Sanai, Nader, Schmidt, Nils-Ole, Steinbach, Joachim P., Thust, Stefanie C., Tolboom, Nelleke, van der Hoorn, Anouk, van der Vaart, Thijs, Verger, Antoine, Vik-Mo, Einar Osland, Watts, Colin, Westphal, Manfred, Wesseling, Pieter, Young, Jacob S., Karschnia, Philipp, Smits, Marion, Reifenberger, Guido, Le Rhun, Emilie, Ellingson, Benjamin M, Galldiks, Norbert, Kim, Michelle M, Huse, Jason T, Schnell, Oliver, Harter, Patrick N, Mohme, Malte, von Baumgarten, Louisa, Albert, Nathalie L, Huang, Raymond Y, Mehta, Minesh P, van den Bent, Martin, Weller, Michael, Vogelbaum, Michael A, Chang, Susan M, Berger, Mitchel S, Tonn, Joerg-Christian ^*

Source: In The Lancet Oncology November 2023 24(11):e438-e450

Assessing variability in brain tumor segmentation to improve volumetric accuracy and characterization of change

Authors: Piedra, Edgar A. Rios, Taira, Ricky K., El-Saden, Suzie, Ellingson, Benjamin M., Bui, Alex A. T., Hsu, William

Source: 2016 IEEE-EMBS International Conference on Biomedical and Health Informatics (BHI) Biomedical and Health Informatics (BHI), 2016 IEEE-EMBS International Conference on. :380-383 Feb, 2016

Relation: 2016 IEEE-EMBS International Conference on Biomedical and Health Informatics (BHI)

A multi-omic brain gut microbiome signature differs between IBS subjects with different bowel habits

Authors: Sarnoff, Rachel P., Bhatt, Ravi R., Osadchiy, Vadim, Dong, Tien, Labus, Jennifer S., Kilpatrick, Lisa A., Chen, Zixi, Subramanyam, Vishvak, Zhang, Yurui, Ellingson, Benjamin M., Naliboff, Bruce, Chang, Lin, Mayer, Emeran A., Gupta, Arpana

Source: In Neuropharmacology 1 March 2023 225

Dispersion of cognitive performance test scores on the MATRICS Consensus Cognitive Battery: A different perspective

Authors: Williamson, David J., Nuechterlein, Keith H., Tishler, Todd, Ventura, Joseph, Ellingson, Benjamin M., Turkoz, Ibrahim, Keefe, Richard S.E., Alphs, Larry

Source: In Schizophrenia Research: Cognition December 2022 30

Evolution of brain functional plasticity associated with increasing symptom severity in degenerative cervical myelopathy

Authors: Wang, Chencai, Ellingson, Benjamin M., Oughourlian, Talia C., Salamon, Noriko, Holly, Langston T.

Source: In eBioMedicine October 2022 84

Radiographic Response Assessment Strategies for Early-Phase Brain Trials in Complex Tumor Types and Drug Combinations: from Digital “Flipbooks” to Control Systems Theory

Authors: Ellingson, Benjamin M., Levin, Victor A., Cloughesy, Timothy F.

Source: In Neurotherapeutics October 2022 19(6):1855-1868

Recovery of Supraspinal Microstructural Integrity and Connectivity in Patients Undergoing Surgery for Degenerative Cervical Myelopathy

Authors: Wang, Chencai, Ellingson, Benjamin M., Salamon, Noriko, Holly, Langston T.

Source: Neurosurgery. 90(4):447-456

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100191144705.0x000001&indx=1&recIds=ETOCvdc_100191144705.0x000001

Synthesizing MR Image Contrast Enhancement Using 3D High-Resolution ConvNets

Authors: Chen, Chao, Raymond, Catalina, Speier, William, Jin, Xinyu, Cloughesy, Timothy F., Enzmann, Dieter, Ellingson, Benjamin M., Arnold, Corey W.

Source: IEEE transactions on bio-medical engineering. 70(2):401-412

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100175504038.0x000001&indx=1&recIds=ETOCvdc_100175504038.0x000001

Hypothetical generalized framework for a new imaging endpoint of therapeutic activity in early phase clinical trials in brain tumors

Authors: Ellingson, Benjamin M, Gerstner, Elizabeth R, Lassman, Andrew B, Chung, Caroline, Colman, Howard, Cole, Patricia E, Leung, David, Allen, Joshua E, Ahluwalia, Manmeet S, Boxerman, Jerrold, Brown, Matthew, Goldin, Jonathan, Nduom, Edjah, Hassan, Islam, Gilbert, Mark R, Mellinghoff, Ingo K, Weller, Michael, Chang, Susan, Arons, David, Meehan, Clair, Selig, Wendy, Tanner, Kirk, Alfred Yung, W K, van den Bent, Martin, Wen, Patrick Y, Cloughesy, Timothy F

Source: Neuro-oncology. 24(8):1219-1229

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100157071122.0x000001&indx=1&recIds=ETOCvdc_100157071122.0x000001

Multinuclear Interleaving of ¹H CEST, Water T2*, and ²³Na MRI at 3 T.

Authors: Lopez Kolkovsky, Alfredo L., Wang, Chencai, Yao, Jingwen, Ellingson, Benjamin M.

Source: NMR in Biomedicine; Mar2025, Vol. 38 Issue 3, p1-14, 14p

Subject Terms: MAGNETIC resonance imaging, DIAGNOSTIC imaging, MEDICAL practice, CELL metabolism, CONTRAST-enhanced magnetic resonance imaging, SPIN-lattice relaxation

Predicting Post-Operative Side Effects in VIM MRgFUS Based on THalamus Optimized Multi Atlas Segmentation (THOMAS) on White-Matter-Nulled MRI: A Retrospective Study.

Authors: Oshima, Sonoko, Kim, Asher, Sun, Xiaonan R., Rifi, Ziad, Cross, Katy A., Fu, Katherine A., Salamon, Noriko, Ellingson, Benjamin M., Bari, Ausaf A., Yao, Jingwen

Source: American Journal of Neuroradiology; Feb2025, Vol. 46 Issue 2, p330-340, 11p

"Synthetic" DSC Perfusion MRI with Adjustable Acquisition Parameters in Brain Tumors Using Dynamic Spin-andGradient-Echo Echoplanar Imaging.

Authors: Sanvito, Francesco, Yao, Jingwen, Cho, Nicholas S., Raymond, Catalina, Telesca, Donatello, Pope, Whitney B., Everson, Richard G., Salamon, Noriko, Boxerman, Jerrold L., Cloughesy, Timothy F., Ellingson, Benjamin M.

Source: American Journal of Neuroradiology; Feb2025, Vol. 46 Issue 2, p311-320, 10p

Cortical morphometric correlational networks associated with cognitive deficits in first episode schizophrenia

Authors: Wang, Chencai, Oughourlian, Talia, Tishler, Todd A., Anwar, Faizan, Raymond, Catalina, Pham, Alex D., Perschon, Abby, Villablanca, J. Pablo, Ventura, Joseph, Subotnik, Kenneth L., Nuechterlein, Keith H., Ellingson, Benjamin M.

Source: In Schizophrenia Research May 2021 231:179-188