A unified model-based framework for doublet or multiplet detection in single-cell multiomics data

Authors: Haoran Hu, Xinjun Wang, Site Feng, Zhongli Xu, Jing Liu, Elisa Heidrich-O’Hare, Yanshuo Chen, Molin Yue, Lang Zeng, Ziqi Rong, Tianmeng Chen, Timothy Billiar, Ying Ding, Heng Huang, Richard H. Duerr, Wei Chen

Source: Nature Communications, Vol 15, Iss 1, Pp 1-16 (2024)

Subject Terms: Science

File Description: electronic resource

Relation: https://doaj.org/toc/2041-1723

Access URL: https://doaj.org/article/63e8e2ce179744b6a2790a44d9e5f6e8

Comprehensive benchmarking of CITE-seq versus DOGMA-seq single cell multimodal omics

Authors: Zhongli Xu, Elisa Heidrich-O’Hare, Wei Chen, Richard H. Duerr

Source: Genome Biology, Vol 23, Iss 1, Pp 1-17 (2022)

Subject Terms: Biology (General), QH301-705.5, Genetics, QH426-470

File Description: electronic resource

Relation: https://doaj.org/toc/1474-760X

Access URL: https://doaj.org/article/2351dac33ab24303aa1d884709507686

GMM-Demux: sample demultiplexing, multiplet detection, experiment planning, and novel cell-type verification in single cell sequencing

Authors: Hongyi Xin, Qiuyu Lian, Yale Jiang, Jiadi Luo, Xinjun Wang, Carla Erb, Zhongli Xu, Xiaoyi Zhang, Elisa Heidrich-O’Hare, Qi Yan, Richard H. Duerr, Kong Chen, Wei Chen

Source: Genome Biology, Vol 21, Iss 1, Pp 1-35 (2020)

Subject Terms: Single cell RNA, Multiplets, Rare cell type, Phony cell type, Demultiplex, Sample barcoding, Biology (General), QH301-705.5, Genetics, QH426-470

File Description: electronic resource

Relation: http://link.springer.com/article/10.1186/s13059-020-02084-2; https://doaj.org/toc/1474-760X

Access URL: https://doaj.org/article/966b2483898541929f515a0c96561a8a