A-MYB and BRDT-dependent RNA Polymerase II pause release orchestrates transcriptional regulation in mammalian meiosis

Authors: Adriana K. Alexander, Edward J. Rice, Jelena Lujic, Leah E. Simon, Stephanie Tanis, Gilad Barshad, Lina Zhu, Jyoti Lama, Paula E. Cohen, Charles G. Danko

Source: Nature Communications, Vol 14, Iss 1, Pp 1-20 (2023)

Subject Terms: Science

File Description: electronic resource

Relation: https://doaj.org/toc/2041-1723

Access URL: https://doaj.org/article/6364da4fd446454e9bcfa2f349fb1200

GDNF-RET signaling and EGR1 form a positive feedback loop that promotes tamoxifen resistance via cyclin D1

Authors: Brooke A. Marks, Ilissa M. Pipia, Chinatsu Mukai, Sachi Horibata, Edward J. Rice, Charles G. Danko, Scott A. Coonrod

Source: BMC Cancer, Vol 23, Iss 1, Pp 1-14 (2023)

Subject Terms: Breast cancer, Estrogen receptor alpha, Tamoxifen resistance, GDNF, RET signaling, EGR1, Neoplasms. Tumors. Oncology. Including cancer and carcinogens, RC254-282

File Description: electronic resource

Relation: https://doaj.org/toc/1471-2407

Access URL: https://doaj.org/article/a513dee986ef4a7189c12bc44866baf1

Multiple stages of evolutionary change in anthrax toxin receptor expression in humans

Authors: Lauren A. Choate, Gilad Barshad, Pierce W. McMahon, Iskander Said, Edward J. Rice, Paul R. Munn, James J. Lewis, Charles G. Danko

Source: Nature Communications, Vol 12, Iss 1, Pp 1-12 (2021)

Subject Terms: Science

File Description: electronic resource

Relation: https://doaj.org/toc/2041-1723

Access URL: https://doaj.org/article/f1abda7d72c149088dee837f05360067

Identification and prediction of developmental enhancers in sea urchin embryos

Authors: César Arenas-Mena, Sofija Miljovska, Edward J. Rice, Justin Gurges, Tanvi Shashikant, Zihe Wang, Sevinç Ercan, Charles G. Danko

Source: BMC Genomics, Vol 22, Iss 1, Pp 1-15 (2021)

Subject Terms: Cis-regulatory element, Enhancer prediction, Developmental gene regulation, Biotechnology, TP248.13-248.65, Genetics, QH426-470

File Description: electronic resource

Relation: https://doaj.org/toc/1471-2164

Access URL: https://doaj.org/article/0fc96c8dc5824e8083977f8c2fffb209

Characterizing RNA stability genome-wide through combined analysis of PRO-seq and RNA-seq data

Authors: Amit Blumberg, Yixin Zhao, Yi-Fei Huang, Noah Dukler, Edward J. Rice, Alexandra G. Chivu, Katie Krumholz, Charles G. Danko, Adam Siepel

Source: BMC Biology, Vol 19, Iss 1, Pp 1-17 (2021)

Subject Terms: RNA half-life, RNA splicing, Epigenomics, PRO-seq, Structural equation modeling, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://doaj.org/toc/1741-7007

Access URL: https://doaj.org/article/402f5011b83a418da6494e4ad564b208

Chromatin run-on sequencing analysis finds that ECM remodeling plays an important role in canine hemangiosarcoma pathogenesis

Authors: Chinatsu Mukai, Eunju Choi, Kelly L. Sams, Elena Zu Klampen, Lynne Anguish, Brooke A. Marks, Edward J. Rice, Zhong Wang, Lauren A. Choate, Shao-Pei Chou, Yukinari Kato, Andrew D. Miller, Charles G. Danko, Scott A. Coonrod

Source: BMC Veterinary Research, Vol 16, Iss 1, Pp 1-14 (2020)

Subject Terms: Hemangiosarcoma, ChRO-seq, ECM, Collagen, LAMA4, PDPN, Veterinary medicine, SF600-1100

File Description: electronic resource

Relation: http://link.springer.com/article/10.1186/s12917-020-02395-3; https://doaj.org/toc/1746-6148

Access URL: https://doaj.org/article/4acfc09b1f384bb6adc5930ffdddaf4f

Genetic dissection of the RNA polymerase II transcription cycle

Authors: Shao-Pei Chou, Adriana K Alexander, Edward J Rice, Lauren A Choate, Charles G Danko

Source: eLife, Vol 11 (2022)

Subject Terms: RNA polymerase II, transcription, gene expression, Medicine, Science, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://elifesciences.org/articles/78458; https://doaj.org/toc/2050-084X

Access URL: https://doaj.org/article/0d48e7764b8b4123ab81d53bbb14c3e0

A bi-stable feedback loop between GDNF, EGR1, and ERα contribute to endocrine resistant breast cancer.

Authors: Sachi Horibata, Edward J Rice, Hui Zheng, Chinatsu Mukai, Tinyi Chu, Brooke A Marks, Scott A Coonrod, Charles G Danko

Source: PLoS ONE, Vol 13, Iss 4, p e0194522 (2018)

Subject Terms: Medicine, Science

File Description: electronic resource

Relation: http://europepmc.org/articles/PMC5882141?pdf=render; https://doaj.org/toc/1932-6203

Access URL: https://doaj.org/article/18ccffbc827744b1b08c5ada6c81555e

ER-positive breast cancer cells are poised for RET-mediated endocrine resistance.

Authors: Sachi Horibata, Edward J Rice, Chinatsu Mukai, Brooke A Marks, Kelly Sams, Hui Zheng, Lynne J Anguish, Scott A Coonrod, Charles G Danko

Source: PLoS ONE, Vol 13, Iss 4, p e0194023 (2018)

Subject Terms: Medicine, Science

File Description: electronic resource

Relation: http://europepmc.org/articles/PMC5880349?pdf=render; https://doaj.org/toc/1932-6203

Access URL: https://doaj.org/article/f0cbcbf30bee4fb8adfff12a7990424a

XX Disorder of Sex Development is associated with an insertion on chromosome 9 and downregulation of RSPO1 in dogs (Canis lupus familiaris).

Authors: Vicki N Meyers-Wallen, Adam R Boyko, Charles G Danko, Jennifer K Grenier, Jason G Mezey, Jessica J Hayward, Laura M Shannon, Chuan Gao, Afrah Shafquat, Edward J Rice, Shashikant Pujar, Stefanie Eggers, Thomas Ohnesorg, Andrew H Sinclair

Source: PLoS ONE, Vol 12, Iss 10, p e0186331 (2017)

Subject Terms: Medicine, Science

File Description: electronic resource

Relation: http://europepmc.org/articles/PMC5650465?pdf=render; https://doaj.org/toc/1932-6203

Access URL: https://doaj.org/article/24ff92ff10bd439682ff6dbe565a1f34