Standardized workflow for multiplexed charge detection mass spectrometry on orbitrap analyzers

Authors: Su, Pei, McGee, John P., Hollas, Michael A. R., Fellers, Ryan T., Durbin, Kenneth R., Greer, Joseph B., Early, Bryan P., Yip, Ping F., Zabrouskov, Vlad, Srzentić, Kristina, Senko, Michael W., Compton, Philip D., Kelleher, Neil L., Kafader, Jared O.

Source: Nature Protocols; 20250101, Issue: Preprints p1-24, 24p

Thorough Performance Evaluation of 213 nm Ultraviolet Photodissociation for Top-down Proteomics

Authors: Fornelli, Luca ^{‡, **}, Srzentić, Kristina ^{‡, ‡‡}, Toby, Timothy K. ^{‡, §§}, Doubleday, Peter F. ^‡, Huguet, Romain ^§, Mullen, Christopher ^§, Melani, Rafael D. ^‡, dos Santos Seckler, Henrique ^‡, DeHart, Caroline J. ^‡, Weisbrod, Chad R. ^{§, ¶¶}, Durbin, Kenneth R. ^{‡, ¶}, Greer, Joseph B. ^‡, Early, Bryan P. ^‡, Fellers, Ryan T. ^‡, Zabrouskov, Vlad ^§, Thomas, Paul M. ^‡, Compton, Philip D. ^‡, Kelleher, Neil L. ^{‡, ‖}

Source: In Molecular & Cellular Proteomics February 2020 19(2):405-420

Accurate Estimation of Context-Dependent False Discovery Rates in Top-Down Proteomics

Authors: LeDuc, Richard D. ^{‡, **}, Fellers, Ryan T. ^‡, Early, Bryan P. ^{‡, §}, Greer, Joseph B. ^‡, Shams, Daniel P. ^¶, Thomas, Paul M. ^{‡, §}, Kelleher, Neil L. ^{‡, §, ‖, ‡‡}

Source: In Molecular & Cellular Proteomics April 2019 18(4):796-805

STORI Plots Enable Accurate Tracking of Individual Ion Signals

Authors: Kafader, Jared O., Beu, Steven C., Early, Bryan P., Melani, Rafael D., Durbin, Kenneth R., Zabrouskov, Vlad, Makarov, Alexander A., Maze, Joshua T., Shinholt, Deven L., Yip, Ping F., Kelleher, Neil L., Compton, Philip D., Senko, Michael W.

Source: Journal of the American Society for Mass Spectrometry. 30(11):2200-2203

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100171995766.0x000001&indx=1&recIds=ETOCvdc_100171995766.0x000001

Proteoform‐Selective Imaging of Tissues Using Mass Spectrometry**

Authors: Yang, Manxi, Hu, Hang, Su, Pei, Thomas, Paul M., Camarillo, Jeannie M., Greer, Joseph B., Early, Bryan P., Fellers, Ryan T., Kelleher, Neil L., Laskin, Julia

Source: Angewandte Chemie. 134(29)

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100165408419.0x000001&indx=1&recIds=ETOCvdc_100165408419.0x000001

Inside Back Cover: Proteoform‐Selective Imaging of Tissues Using Mass Spectrometry (Angew. Chem. Int. Ed. 29/2022)

Authors: Yang, Manxi, Hu, Hang, Su, Pei, Thomas, Paul M., Camarillo, Jeannie M., Greer, Joseph B., Early, Bryan P., Fellers, Ryan T., Kelleher, Neil L., Laskin, Julia

Source: Angewandte Chemie international edition. 61(29)

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100165426199.0x000001&indx=1&recIds=ETOCvdc_100165426199.0x000001

Innenrücktitelbild: Proteoform‐Selective Imaging of Tissues Using Mass Spectrometry (Angew. Chem. 29/2022)

Authors: Yang, Manxi, Hu, Hang, Su, Pei, Thomas, Paul M., Camarillo, Jeannie M., Greer, Joseph B., Early, Bryan P., Fellers, Ryan T., Kelleher, Neil L., Laskin, Julia

Source: Angewandte Chemie. 134(29)

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100162704537.0x000001&indx=1&recIds=ETOCvdc_100162704537.0x000001

ProSight Annotator: Complete control and customization of protein entries in UniProt XML files

Authors: Greer, Joseph B., Early, Bryan P., Durbin, Kenneth R., Patrie, Steven M., Thomas, Paul M., Kelleher, Neil L., LeDuc, Richard D., Fellers, Ryan T.

Source: Proteomics. 22(11-12)

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100154004492.0x000001&indx=1&recIds=ETOCvdc_100154004492.0x000001

Single Cell Analysis of Proteoforms.

Authors: Su, Pei, Hollas, Michael A. R., Butun, Fatma Ayaloglu, Kanchustambham, Vijaya Lakshmi, Rubakhin, Stanislav, Ramani, Namrata, Greer, Joseph B., Early, Bryan P., Fellers, Ryan T., Caldwell, Michael A., Sweedler, Jonathan V., Kafader, Jared O., Kelleher, Neil L.

Source: Journal of Proteome Research; 6/7/2024, Vol. 23 Issue 6, p1883-1893, 11p

Integrated Bottom-Up and Top-Down Proteomics of Patient-Derived Breast Tumor Xenografts

Authors: Ntai, Ioanna ^{‡, §}, LeDuc, Richard D. ^‡, Fellers, Ryan T. ^‡, Erdmann-Gilmore, Petra ^‖, Davies, Sherri R. ^‖, Rumsey, Jeanne ^‖, Early, Bryan P. ^‡, Thomas, Paul M. ^{‡, ¶}, Li, Shunqiang ^‖, Compton, Philip D. ^{‡, ‖}, Ellis, Matthew J.C. ^**, Ruggles, Kelly V. ^‡‡, Fenyö, David ^‡‡, Boja, Emily S. ^§§, Rodriguez, Henry ^§§, Townsend, R. Reid ^{‖, ¶¶}, Kelleher, Neil L. ^{‡, §, ¶, ¶¶}

Source: In Molecular & Cellular Proteomics January 2016 15(1):45-56

Large-scale Top-down Proteomics of the Human Proteome: Membrane Proteins, Mitochondria, and Senescence

Authors: Catherman, Adam D. ^‡, Durbin, Kenneth R. ^‡, Ahlf, Dorothy R. ^‡, Early, Bryan P. ^‡, Fellers, Ryan T. ^‡, Tran, John C. ^‡, Thomas, Paul M. ^‡, Kelleher, Neil L. ^{‡, §}

Source: In Molecular & Cellular Proteomics December 2013 12(12):3465-3473

Multiplexed mass spectrometry of individual ions improves measurement of proteoforms and their complexes

Authors: Kafader, Jared O., Melani, Rafael D., Durbin, Kenneth R., Ikwuagwu, Bon, Early, Bryan P., Fellers, Ryan T., Beu, Steven C., Zabrouskov, Vlad, Makarov, Alexander A., Maze, Joshua T., Shinholt, Deven L., Yip, Ping F., Tullman-Ercek, Danielle, Senko, Michael W., Compton, Philip D., Kelleher, Neil L.

Source: Nature Methods; April 2020, Vol. 17 Issue: 4 p391-394, 4p

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Mapping intact protein isoforms in discovery mode using top-down proteomics.

Authors: Tran, John C., Zamdborg, Leonid, Ahlf, Dorothy R., Lee, Ji Eun, Catherman, Adam D., Durbin, Kenneth R., Tipton, Jeremiah D., Vellaichamy, Adaikkalam, Kellie, John F., Li, Mingxi, Wu, Cong, Sweet, Steve M. M., Early, Bryan P., Siuti, Nertila, LeDuc, Richard D., Compton, Philip D., Thomas, Paul M., Kelleher, Neil L.

Source: Nature. 12/8/2011, Vol. 480 Issue 7376, p254-258. 5p. 1 Diagram, 3 Graphs.

Subjects: PROTEOMICS, PROTEIN fractionation, HUMAN gene mapping, MASS spectrometry, POST-translational modification, RNA splicing, PROTEOLYSIS

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