DNA methylation-linked chromatin accessibility affects genomic architecture in Arabidopsis

Authors: Zhong, Zhenhui, Feng, Suhua, Duttke, Sascha H., Potok, Magdalena E., Zhang, Yiwei, Gallego-Bartolomé, Javier, Liu, Wanlu, Jacobsen, Steven E.

Source: Proceedings of the National Academy of Sciences of the United States of America, 2021 Feb 01. 118(5), 1-10.

Access URL: https://www.jstor.org/stable/27006169

The Role of Auxin in the Pattern Formation of the Asteraceae Flower Head (Capitulum)

Authors: Zoulias, Nicholas, Duttke, Sascha H. C., Garcês, Helena, Spencer, Victoria, Kim, Minsung

Source: Plant Physiology, 2019 Feb 01. 179(2), 391-401.

Access URL: https://www.jstor.org/stable/26603466

Analysis of Genetically Diverse Macrophages Reveals Local and Domain-wide Mechanisms that Control Transcription Factor Binding and Function

Authors: Link, Verena M., Duttke, Sascha H., Chun, Hyun B., Holtman, Inge R., Westin, Emma, Hoeksema, Marten A., Abe, Yohei, Skola, Dylan, Romanoski, Casey E., Tao, Jenhan, Fonseca, Gregory J., Troutman, Ty D., Spann, Nathanael J., Strid, Tobias, Sakai, Mashito, Yu, Miao, Hu, Rong, Fang, Rongxin, Metzler, Dirk, Ren, Bing, Glass, Christopher K.

Source: In Cell 14 June 2018 173(7):1796-1809

The Dfm1 Derlin Is Required for ERAD Retrotranslocation of Integral Membrane Proteins

Authors: Neal, Sonya, Jaeger, Philipp A., Duttke, Sascha H., Benner, Christopher, K.Glass, Christopher, Ideker, Trey, Hampton, Randolph Y.

Source: In Molecular Cell 18 January 2018 69(2):306-320

Position-dependent function of human sequence-specific transcription factors.

Authors: Duttke, Sascha H., Guzman, Carlos, Chang, Max, Delos Santos, Nathaniel P., McDonald, Bayley R., Xie, Jialei, Carlin, Aaron F., Heinz, Sven, Benner, Christopher

Source: Nature; Jul2024, Vol. 631 Issue 8022, p891-898, 8p

From promoter motif to cardiac function: a single DPE motif affects transcription regulation and organ function in vivo.

Authors: Sloutskin, Anna, Itzhak, Dekel, Vogler, Georg, Pozeilov, Hadar, Ideses, Diana, Alter, Hadar, Adato, Orit, Shachar, Hadar, Doniger, Tirza, Shohat-Ophir, Galit, Frasch, Manfred, Bodmer, Rolf, Duttke, Sascha H., Juven-Gershon, Tamar

Source: Development (09501991); Jul2024, Vol. 151 Issue 14, p1-14, 14p

Subject Terms: TRANSCRIPTION factors, RNA polymerase II, GENE expression, GENETIC transcription, CONGENITAL heart disease

Nascent transcription reveals regulatory changes in extremophile fishes inhabiting hydrogen sulfide-rich environments.

Authors: Perry, Blair W., McGowan, Kerry L., Arias-Rodriguez, Lenin, Duttke, Sascha H., Tobler, Michael, Kelley, Joanna L.

Source: Proceedings of the Royal Society B: Biological Sciences; 6/26/2024, Vol. 291 Issue 2025, p1-12, 12p

Subject Terms: TRANSCRIPTION factors, RNA sequencing, GENE expression, GENETIC transcription, BINDING sites, GENE enhancers

Nascent RNA sequencing reveals distinct features in plant transcription

Authors: Hetzel, Jonathan, Duttke, Sascha H., Benner, Christopher, Chory, Joanne

Source: Proceedings of the National Academy of Sciences of the United States of America, 2016 Oct . 113(43), 12316-12321.

Access URL: https://www.jstor.org/stable/26472245

ElemeNT 2023: an enhanced tool for detection and curation of core promoter elements.

Authors: Adato, Orit, Sloutskin, Anna, Komemi, Hodaya, Brabb, Ian, Duttke, Sascha, Bucher, Philipp, Unger, Ron, Juven-Gershon, Tamar

Source: Bioinformatics; Mar2024, Vol. 40 Issue 3, p1-5, 5p

Subject Terms: GENE expression, BINDING sites, SYNTHETIC genes, DATABASES, SOURCE code, INTERNET servers, SHORT tandem repeat analysis

Yeast derlin Dfm1 employs a chaperone-like function to resolve misfolded membrane protein stress.

Authors: Kandel, Rachel¹, Jung, Jasmine¹, Syau, Della¹, Kuo, Tiffany¹, Songster, Livia¹, Horn, Casey¹, Chapman, Claire¹, Aguayo, Analine¹, Duttke, Sascha², Benner, Christopher³, Neal, Sonya E.¹, seneal@ucsd.edu

Source: PLoS Biology; 1/23/2023, Vol. 21 Issue 1, p1-33, 33p, 3 Black and White Photographs, 3 Diagrams, 2 Graphs

Evolution and diversification of the basal transcription machinery

Authors: Duttke, Sascha H.C.

Source: In Trends in Biochemical Sciences March 2015 40(3):127-129

Human Promoters Are Intrinsically Directional

Authors: Duttke, Sascha H.C., Lacadie, Scott A., Ibrahim, Mahmoud M., Glass, Christopher K., Corcoran, David L., Benner, Christopher, Heinz, Sven, Kadonaga, James T., Ohler, Uwe

Source: In Molecular Cell 19 February 2015 57(4):674-684

RNA Polymerase III Accurately Initiates Transcription from RNA Polymerase II Promoters in Vitro

Authors: Duttke, Sascha H.C.

Source: In Journal of Biological Chemistry 18 July 2014 289(29):20396-20404

Mutant Flower Morphologies in the Wind Orchid, a Novel Orchid Model Species

Authors: Duttke, Sascha, Zoulias, Nicholas, Kim, Minsung

Source: Plant Physiology, 2012 Apr 01. 158(4), 1542-1547.

Access URL: https://www.jstor.org/stable/41496301

Three-dimensional quantification of growth

Authors: Duttke, Sascha H. C.

Availability: http://data.europeana.eu/aggregation/europeana/2048441/item_KCTLQCCW7KDQIGCVIA2FNAMG4RGVJFP2

MEPP: more transparent motif enrichment by profiling positional correlations.

Authors: Delos Santos, Nathaniel P, Duttke, Sascha, Heinz, Sven, Benner, Christopher

Source: NAR Genomics & Bioinformatics; Dec2022, Vol. 4 Issue 4, p1-15, 15p

SREBP2-dependent lipid gene transcription enhances the infection of human dendritic cells by Zika virus.

Authors: Branche, Emilie, Wang, Ying-Ting, Viramontes, Karla M., Valls Cuevas, Joan M., Xie, Jialei, Ana-Sosa-Batiz, Fernanda, Shafee, Norazizah, Duttke, Sascha H., McMillan, Rachel E., Clark, Alex E., Nguyen, Michael N., Garretson, Aaron F., Crames, Jan J., Spann, Nathan J., Zhu, Zhe, Rich, Jeremy N., Spector, Deborah H., Benner, Christopher, Shresta, Sujan, Carlin, Aaron F.

Source: Nature Communications; 9/12/2022, Vol. 13 Issue 1, p1-15, 15p

Subject Terms: ZIKA virus, STEROL regulatory element-binding proteins, ZIKA virus infections, DENDRITIC cells, TRANSCRIPTION factors, GENE silencing, LIPIDS

Coccidioides Species: A Review of Basic Research: 2022.

Authors: Kirkland, Theo N., Stevens, David A., Hung, Chiung-Yu, Beyhan, Sinem, Taylor, John W., Shubitz, Lisa F., Duttke, Sascha H., Heidari, Arash, Johnson, Royce H., Deresinski, Stanley C., Lauer, Antje, Fierer, Joshua

Source: Journal of Fungi; Aug2022, Vol. 8 Issue 8, p859-859, 36p

Subject Terms: COCCIDIOIDOMYCOSIS, SPECIES, IMMUNOCOMPROMISED patients, MYCOLOGY, HISTOPLASMOSIS

Chapter One - Assays for protein retrotranslocation in ERAD

Authors: Neal, Sonya ^*, Duttke, Sascha H., Hampton, Randolph Y.

Source: In Methods in Enzymology 2019 619:1-26

Glucocorticoid Receptor-Regulated Enhancers Play a Central Role in the Gene Regulatory Networks Underlying Drug Addiction.

Authors: Duttke, Sascha H., Montilla-Perez, Patricia, Chang, Max W., Li, Hairi, Chen, Hao, Carrette, Lieselot L. G., Guglielmo, Giordano de, George, Olivier, Palmer, Abraham A., Benner, Christopher, Telese, Francesca

Source: Frontiers in Neuroscience; 5/16/2022, Vol. 16, p1-15, 15p

Subject Terms: GENE regulatory networks, DRUG addiction, REGULATOR genes, DRUG overdose, GLUCOCORTICOID receptors