Retrospective identification of cell-intrinsic factors that mark pluripotency potential in rare somatic cells

Authors: Jain, Naveen, Goyal, Yogesh, Dunagin, Margaret C., Cote, Christopher J., Mellis, Ian A., Emert, Benjamin, Jiang, Connie L., Dardani, Ian P., Reffsin, Sam, Arnett, Miles, Yang, Wenli, Raj, Arjun

Source: In Cell Systems 21 February 2024 15(2):109-133

Systematically quantifying morphological features reveals constraints on organoid phenotypes

Authors: Beck, Lauren E., Lee, Jasmine, Coté, Christopher, Dunagin, Margaret C., Lukonin, Ilya, Salla, Nikkita, Chang, Marcello K., Hughes, Alex J., Mornin, Joseph D., Gartner, Zev J., Liberali, Prisca, Raj, Arjun

Source: In Cell Systems 20 July 2022 13(7):547-560

Responsiveness to perturbations is a hallmark of transcription factors that maintain cell identity in vitro

Authors: Mellis, Ian A., Edelstein, Hailey I., Truitt, Rachel, Goyal, Yogesh, Beck, Lauren E., Symmons, Orsolya, Dunagin, Margaret C., Linares Saldana, Ricardo A., Shah, Parisha P., Pérez-Bermejo, Juan A., Padmanabhan, Arun, Yang, Wenli, Jain, Rajan, Raj, Arjun

Source: In Cell Systems 22 September 2021 12(9):885-899

p53 mediates target gene association with nuclear speckles for amplified RNA expression

Authors: Alexander, Katherine A., Coté, Allison, Nguyen, Son C., Zhang, Liguo, Gholamalamdari, Omid, Agudelo-Garcia, Paula, Lin-Shiao, Enrique, Tanim, K.M.A., Lim, Joan, Biddle, Nicolas, Dunagin, Margaret C., Good, Charly R., Mendoza, Mariel R., Little, Shawn C., Belmont, Andrew, Joyce, Eric F., Raj, Arjun, Berger, Shelley L.

Source: In Molecular Cell 15 April 2021 81(8):1666-1681

Intercellular mRNA trafficking via membrane nanotube-like extensions in mammalian cells

Authors: Haimovich, Gal, Ecker, Christopher M., Dunagin, Margaret C., Eggan, Elliott, Raj, Arjun, Gerst, Jeffrey E., Singer, Robert H.

Source: Proceedings of the National Academy of Sciences of the United States of America, 2017 Nov . 114(46), E9873-E9882.

Access URL: https://www.jstor.org/stable/26486593

Group 1 Innate Lymphoid Cell Lineage Identity Is Determined by a cis-Regulatory Element Marked by a Long Non-coding RNA

Authors: Mowel, Walter K., McCright, Sam J., Kotzin, Jonathan J., Collet, Magalie A., Uyar, Asli, Chen, Xin, DeLaney, Alexandra, Spencer, Sean P., Virtue, Anthony T., Yang, EnJun, Villarino, Alejandro, Kurachi, Makoto, Dunagin, Margaret C., Pritchard, Gretchen Harms, Stein, Judith, Hughes, Cynthia, Fonseca-Pereira, Diogo, Veiga-Fernandes, Henrique, Raj, Arjun, Kambayashi, Taku, Brodsky, Igor E., O’Shea, John J., Wherry, E. John, Goff, Loyal A., Rinn, John L., Williams, Adam, Flavell, Richard A., Henao-Mejia, Jorge

Source: In Immunity 19 September 2017 47(3):435-449

Diverse clonal fates emerge upon drug treatment of homogeneous cancer cells

Authors: Goyal, Yogesh, Busch, Gianna T., Pillai, Maalavika, Li, Jingxin, Boe, Ryan H., Grody, Emanuelle I., Chelvanambi, Manoj, Dardani, Ian P., Emert, Benjamin, Bodkin, Nicholas, Braun, Jonas, Fingerman, Dylan, Kaur, Amanpreet, Jain, Naveen, Ravindran, Pavithran T., Mellis, Ian A., Kiani, Karun, Alicea, Gretchen M., Fane, Mitchell E., Ahmed, Syeda Subia, Li, Haiyin, Chen, Yeqing, Chai, Cedric, Kaster, Jessica, Witt, Russell G., Lazcano, Rossana, Ingram, Davis R., Johnson, Sarah B., Wani, Khalida, Dunagin, Margaret C., Lazar, Alexander J., Weeraratna, Ashani T., Wargo, Jennifer A., Herlyn, Meenhard, Raj, Arjun

Source: Nature; August 2023, Vol. 620 Issue: 7974 p651-659, 9p

CTCF blocks antisense transcription initiation at divergent promoters

Authors: Luan, Jing, Vermunt, Marit W., Syrett, Camille M., Coté, Allison, Tome, Jacob M., Zhang, Haoyue, Huang, Anran, Luppino, Jennifer M., Keller, Cheryl A., Giardine, Belinda M., Zhang, Shiping, Dunagin, Margaret C., Zhang, Zhe, Joyce, Eric F., Lis, John T., Raj, Arjun, Hardison, Ross C., Blobel, Gerd A.

Source: Nature Structural and Molecular Biology; November 2022, Vol. 29 Issue: 11 p1136-1144, 9p

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LADL: light-activated dynamic looping for endogenous gene expression control

Authors: Kim, Ji Hun, Rege, Mayuri, Valeri, Jacqueline, Dunagin, Margaret C., Metzger, Aryeh, Titus, Katelyn R., Gilgenast, Thomas G., Gong, Wanfeng, Beagan, Jonathan A., Raj, Arjun, Phillips-Cremins, Jennifer E.

Source: Nature Methods; July 2019, Vol. 16 Issue: 7 p633-639, 7p

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Localization and abundance analysis of human lncRNAs at single-cell and single-molecule resolution.

Authors: Cabili, Moran N., Dunagin, Margaret C., McClanahan, Patrick D., Biaesch, Andrew, Padovan-Merhar, Olivia, Regev, Aviv, Rinn, John L., Raj, Arjun

Source: Genome Biology; 2015, Vol. 16 Issue 1, p372-400, 29p

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Corrigendum: Rare cell variability and drug-induced reprogramming as a mode of cancer drug resistance.

Authors: Shaffer, Sydney M., Dunagin, Margaret C., Torborg, Stefan R., Torre, Eduardo A., Emert, Benjamin, Krepler, Clemens, Beqiri, Marilda, Sproesser, Katrin, Brafford, Patricia A., Xiao, Min, Eggan, Elliott, Anastopoulos, Ioannis N., Vargas-Garcia, Cesar A., Singh, Abhyudai, Nathanson, Katherine L., Herlyn, Meenhard, Raj, Arjun

Source: Nature; 3/8/2017, Vol. 555 Issue 7695, p274-274, 1p