Genomic characterization of HLA class I and class II genes in ethnically diverse sub‐Saharan African populations: A report on novel HLA alleles

Authors: Pagkrati, Ioanna, Duke, Jamie L., Mbunwe, Eric, Mosbruger, Timothy L., Ferriola, Deborah, Wasserman, Jenna, Dinou, Amalia, Tairis, Nikolaos, Damianos, Georgios, Kotsopoulou, Ioanna, Papaioannou, Joanna, Giannopoulos, Diamantoula, Beggs, William, Nyambo, Thomas, Mpoloka, Sununguko W., Mokone, Gaonyadiwe G., Njamnshi, Alfred K., Fokunang, Charles, Woldemeskel, Dawit, Belay, Gurja, Maiers, Martin, Tishkoff, Sarah A., Monos, Dimitri S.

Source: HLA. 102(2):192-205

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KIR-favorable TCR-αβ/CD19-depleted haploidentical HCT in children with ALL/AML/MDS: primary analysis of the PTCTC ONC1401 trial

Authors: Pulsipher, Michael A. ^∗, Ahn, Kwang W., Bunin, Nancy J., Lalefar, Nahal, Anderson, Eric, Flower, Allyson, Cairo, Mitchell S., Talano, Julie-An, Chaudhury, Sonali, Kitko, Carrie L., Duke, Jamie L., Monos, Dimitrios, Leung, Wing, Dvorak, Christopher C., Abdel-Azim, Hisham

Source: In Blood 15 December 2022 140(24):2556-2572

Identification of HLA‐DPA1*01:03:01:57 and HLA‐DPA1*02:01:01:29 from a case–control study of atopic dermatitis

Authors: Damianos, Georgios, Duke, Jamie L., Pagkrati, Ioanna, Margolis, David J., Monos, Dimitri S.

Source: HLA. 101(3):307-309

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100175872581.0x000001&indx=1&recIds=ETOCvdc_100175872581.0x000001

Spatial constrains and information content of sub-genomic regions of the human genome

Authors: Karakatsanis, Leonidas P., Pavlos, Evgenios G., Tsoulouhas, George, Stamokostas, Georgios L., Mosbruger, Timothy, Duke, Jamie L., Pavlos, George P., Monos, Dimitri S.

Source: In iScience 19 February 2021 24(2)

HLA Class I Polymorphisms Influencing Both Peptide Binding and KIR Interactions Are Associated with Remission among Children with Atopic Dermatitis: A Longitudinal Study

Authors: Margolis, David J., Mitra, Nandita, Kim, Brian S., Duke, Jamie L., Berna, Ron A., Hoffstad, Ole J., Wasserman, Jenna R., Ferriola, Deborah A., Mosbruger, Tim L., Wubbenhorst, Bradley S.

Source: Journal of immunology. 206(9):2038-2044

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCRN626447204&indx=1&recIds=ETOCRN626447204

Complex Linkage Disequilibrium Effects in HLA-DPB1 Expression and Molecular Mismatch Analyses of Transplantation Outcomes

Authors: Shieh, Mengkai, Hayeck, Tristan J., Dinh, Anh, Duke, Jamie L., Chitnis, Nilesh, Mosbruger, Timothy, Morlen, Ryan P., Ferriola, Deborah, Kneib, Carolina, Hu, Taishan, Huang, Yanping, Monos, Dimitri S.

Source: Transplantation. 105(3):637-647

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100184647792.0x000001&indx=1&recIds=ETOCvdc_100184647792.0x000001

Utilizing nanopore sequencing technology for the rapid and comprehensive characterization of eleven HLA loci; addressing the need for deceased donor expedited HLA typing

Authors: Mosbruger, Timothy L., Dinou, Amalia, Duke, Jamie L., Ferriola, Deborah, Mehler, Hilary, Pagkrati, Ioanna, Damianos, Georgios, Mbunwe, Eric, Sarmady, Mahdi, Lyratzakis, Ioannis, Tishkoff, Sarah A., Dinh, Anh, Monos, Dimitri S.

Source: In Human Immunology August 2020 81(8):413-422

Resolving MiSeq-Generated Ambiguities in HLA-DPB1 Typing by Using the Oxford Nanopore Technology

Authors: Duke, Jamie L., Mosbruger, Timothy L., Ferriola, Deborah, Chitnis, Nilesh, Hu, Taishan, Tairis, Nikolaos, Margolis, David J., Monos, Dimitri S.

Source: In The Journal of Molecular Diagnostics September 2019 21(5):852-861

Assessing the utilization of high-resolution 2-field HLA typing in solid organ transplantation

Authors: Huang, Yanping, Dinh, Anh, Heron, Steven, Gasiewski, Allison, Kneib, Carolina, Mehler, Hilary, Mignogno, Michael T., Morlen, Ryan, Slavich, Larissa, Kentzel, Ethan, Frackelton, Edward C., Duke, Jamie L., Ferriola, Deborah, Mosbruger, Timothy, Timofeeva, Olga A., Geier, Steven S., Monos, Dimitri ^*

Source: In American Journal of Transplantation July 2019 19(7):1955-1963

Next-generation HLA typing of 382 International Histocompatibility Working Group reference B-lymphoblastoid cell lines: Report from the 17th International HLA and Immunogenetics Workshop

Authors: Creary, Lisa E., Guerra, Sandra G., Chong, Winnie, Brown, Colin J., Turner, Thomas R., Robinson, James, Bultitude, Will P., Mayor, Neema P., Marsh, Steven G.E., Saito, Katsuyuki, Lam, Kevin, Duke, Jamie L., Mosbruger, Timothy L., Ferriola, Deborah, Monos, Dimitrios, Willis, Amanda, Askar, Medhat, Fischer, Gottfried, Saw, Chee Loong, Ragoussis, Jiannis, Petrek, Martin, Serra-Pagés, Carles, Juan, Manel, Stavropoulos-Giokas, Catherine, Dinou, Amalia, Ameen, Reem, Al Shemmari, Salem, Spierings, Eric, Gendzekhadze, Ketevan, Morris, Gerald P., Zhang, Qiuheng, Kashi, Zahra, Hsu, Susan, Gangavarapu, Sridevi, Mallempati, Kalyan C., Yamamoto, Fumiko, Osoegawa, Kazutoyo, Vayntrub, Tamara, Chang, Chia-Jung, Hansen, John A., Fernández-Viňa, Marcelo A.

Source: In Human Immunology July 2019 80(7):449-460

Genomic characterization of MICA gene using multiple next generation sequencing platforms: A validation study

Authors: Zou, Yizhou, Duke, Jamie L., Ferriola, Deborah, Luo, Qizhi, Wasserman, Jenna, Mosbruger, Timothy L., Luo, Weiguang, Cai, Liang, Zou, Kevin, Tairis, Nikolaos, Damianos, Georgios, Pagkrati, Ioanna, Kukuruga, Debra, Huang, Yanping, Monos, Dimitri S.

Source: HLA. 96(4):430-444

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Characterization of 108 Genomic DNA Reference Materials for 11 Human Leukocyte Antigen Loci: A GeT-RM Collaborative Project

Authors: Bettinotti, Maria P., Ferriola, Deborah, Duke, Jamie L., Mosbruger, Timothy L., Tairis, Nikolaos, Jennings, Lawrence, Kalman, Lisa V., Monos, Dimitri

Source: In The Journal of Molecular Diagnostics September 2018 20(5):703-715

Somatic HLA mutations expose the role of class I–mediated autoimmunity in aplastic anemia and its clonal complications

Authors: Babushok, Daria V. ^{1, 2, *}, Duke, Jamie L. ³, Xie, Hongbo M. ⁴, Stanley, Natasha ², Atienza, Jamie ², Perdigones, Nieves ², Nicholas, Peter ², Ferriola, Deborah ³, Li, Yimei ⁵, Huang, Hugh ², Ye, Wenda ², Morrissette, Jennifer J.D. ⁶, Kearns, Jane ⁶, Porter, David L. ¹, Podsakoff, Gregory M. ⁷, Eisenlohr, Laurence C. ^{3, 6}, Biegel, Jaclyn A. ^{8, 9, 10}, Chou, Stella T. ¹¹, Monos, Dimitrios S. ³, Bessler, Monica ^{1, 2}, Olson, Timothy S. ^{2, 12}

Source: In Blood Advances 10 October 2017 1(22):1900-1910

Assessing a single targeted next generation sequencing for human leukocyte antigen typing protocol for interoperability, as performed by users with variable experience

Authors: Gandhi, Manish J., Ferriola, Deborah, Lind, Curt, Duke, Jamie L., Huynh, Anh, Papazoglou, Anna, Mackiewicz, Kate, Christiansen, Mette, Dong, Wei, Hsu, Susan, Thomas, Dawn, Schneider, Brittany, Pierce, Erin, Kearns, Jane, Kamoun, Malek, Monos, Dimitri, Askar, Medhat

Source: In Human Immunology October 2017 78(10):642-648

The Impact of Patterns in Linkage Disequilibrium and Sequencing Quality on the Imprint of Balancing Selection.

Authors: Hayeck, Tristan J^1,2, hayeckt@chop.edu, Li, Yang^1,2, Mosbruger, Timothy L¹, Bradfield, Jonathan P³, Gleason, Adam G¹, Damianos, George¹, Shaw, Grace Tzun-Wen¹, Duke, Jamie L¹, Conlin, Laura K^1,2, Turner, Tychele N⁴, Fernández-Viña, Marcelo A^5,6, Sarmady, Mahdi^1,2, Monos, Dimitri S^1,2

Source: Genome Biology & Evolution; Feb2024, Vol. 16 Issue 2, p1-21, 21p

Association of HLA-DRB1 genetic variants with the persistence of atopic dermatitis

Authors: Margolis, David J., Mitra, Nandita, Kim, Brian, Gupta, Jayanta, Hoffstad, Ole J., Papadopoulos, Maryte, Wubbenhorst, Bradley, Nathanson, Katherine L., Duke, Jamie L., Monos, Dimitri S., Kamoun, Malek

Source: In Human Immunology August 2015 76(8):571-577

Targeted Next-Generation Sequencing for Human Leukocyte Antigen Typing in a Clinical Laboratory: Metrics of Relevance and Considerations for Its Successful Implementation

Authors: Gandhi, Manish J., Ferriola, Deborah, Huang, Yanping, Duke, Jamie L., Monos, Dimitri

Source: Archives of pathology & laboratory medicine. 141(6):806-812

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Targeted and complete genomic sequencing of the major histocompatibility complex in haplotypic form of individual heterozygous samples

Authors: Hu, Taishan, Mosbruger, Timothy L., Tairis, Nikolaos G., Dinou, Amalia, Jayaraman, Pushkala, Sarmady, Mahdi, Brewster, Kingham, Li, Yang, Hayeck, Tristan J., Duke, Jamie L., Monos, Dimitri S.

Source: Genome Research; 2024, Vol. 34 Issue: 10 p1500-1513, 14p

Development of hemolytic paroxysmal nocturnal hemoglobinuria without graft loss following hematopoietic stem cell transplantation for acquired aplastic anemia

Authors: Oved, Joseph H., Stanley, Natasha, Babushok, Daria V., Huang, Yanping, Duke, Jamie L., Monos, Dimitrios S., Teachey, David T., Olson, Timothy S.

Source: Pediatric transplantation. 23(4)

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Two levels of protection for the B cell genome during somatic hypermutation.

Authors: Liu, Man, Duke, Jamie L., Richter, Daniel J.

Source: Nature; February 14 2008, Vol. 451, p841-845, 5p