SARS-CoV-2 Wastewater Genomic Surveillance: Approaches, Challenges, and Opportunities

Authors: Munteanu, Viorel, Saldana, Michael A., Dreifuss, David, Ouyang, Wenhao O., Ferdous, Jannatul, Mohebbi, Fatemeh, Schlueter, Jessica, Ciorba, Dumitru, Bostan, Viorel, Gordeev, Victor, Su, Justin Maine, Kasianchuk, Nadiia, Sharma, Nitesh Kumar, Knyazev, Sergey, Aßmann, Eva, Lobiuc, Andrei, Covasa, Mihai, Crandall, Keith A., Wu, Nicholas C., Mason, Christopher E., Tierney, Braden T, Lucaci, Alexander G, Ophoff, Roel A., Gibas, Cynthia, Rzymski, Piotr, Skums, Pavel, Solo-Gabriele, Helena, Niko, Beerenwinkel, Zelikovsky, Alex, Hölzer, Martin, Smith, Adam, Mangul, Serghei

Subject Terms: Quantitative Biology - Genomics

Access URL: http://arxiv.org/abs/2309.13326

Assessing different next-generation sequencing technologies for wastewater-based epidemiology

Authors: John, Anika ^{a, b}, Dreifuss, David ^{a, b}, Kang, Seju ^c, Bratus-Neuenschwander, Anna ^d, Zajac, Natalia ^d, Topolsky, Ivan ^{a, b}, Dondi, Arthur ^{a, b}, Aquino, Catharine ^d, Julian, Timothy R. ^{c, e, f}, Beerenwinkel, Niko ^{a, b, ⁎}

Source: In Water Research 1 December 2024 267

Quantification of the spread of SARS-CoV-2 variant B.1.1.7 in Switzerland

Authors: Chen, Chaoran, Nadeau, Sarah Ann, Topolsky, Ivan, Manceau, Marc, Huisman, Jana S., Jablonski, Kim Philipp, Fuhrmann, Lara, Dreifuss, David, Jahn, Katharina, Beckmann, Christiane, Redondo, Maurice, Noppen, Christoph, Risch, Lorenz, Risch, Martin, Wohlwend, Nadia, Kas, Sinem, Bodmer, Thomas, Roloff, Tim, Stange, Madlen, Egli, Adrian, Eckerle, Isabella, Kaiser, Laurent, Denes, Rebecca, Feldkamp, Mirjam, Nissen, Ina, Santacroce, Natascha, Burcklen, Elodie, Aquino, Catharine, de Gouvea, Andreia Cabral, Moccia, Maria Domenica, Grüter, Simon, Sykes, Timothy, Opitz, Lennart, White, Griffin, Neff, Laura, Popovic, Doris, Patrignani, Andrea, Tracy, Jay, Schlapbach, Ralph, Dermitzakis, Emmanouil T., Harshman, Keith, Xenarios, Ioannis, Pegeot, Henri, Cerutti, Lorenzo, Penet, Deborah, Blin, Anthony, Elies, Melyssa, Althaus, Christian L., Beisel, Christian, Beerenwinkel, Niko, Ackermann, Martin, Stadler, Tanja ^*

Source: In Epidemics December 2021 37

V-pipe 3.0: a sustainable pipeline for within-sample viral genetic diversity estimation.

Authors: Fuhrmann, Lara, Jablonski, Kim Philipp, Topolsky, Ivan, Batavia, Aashil A, Borgsmüller, Nico, Baykal, Pelin Icer, Carrara, Matteo, Chen, Chaoran, Dondi, Arthur, Dragan, Monica, Dreifuss, David, John, Anika, Langer, Benjamin, Okoniewski, Michal, Plessis, Louis du, Schmitt, Uwe, Singer, Franziska, Stadler, Tanja, Beerenwinkel, Niko

Source: GigaScience; 2024, Vol. 13 Issue 1, p1-14, 14p

Subject Terms: GENETIC variation, VIRAL genomes, HAPLOTYPES, DATA science, DATA analysis, NUCLEOTIDE sequencing

Inferring transmission fitness advantage of SARSCoV-2 variants of concern from wastewater samples using digital PCR, Switzerland, December 2020 through March 2021.

Authors: Caduff, Lea, Dreifuss, David, Schindler, Tobias, Devaux, Alexander J., Ganesanandamoorthy, Pravin, Kull, Anina, Stachler, Elyse, Fernandez-Cassi, Xavier, Beerenwinkel, Niko, Kohn, Tamar, Ort, Christoph, Julian, Timothy R.

Source: Eurosurveillance (15607917); 3/10/2022, Vol. 27 Issue 10, p1-10, 10p

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Maneuvering Through Key Construction Contract Provisions: The Liquidated Damages Clause and the No-Damage-for-Delay Clause.

Authors: Dreifuss, David C., Strong, Gary

Source: Construct!; Mar2006, Vol. 15 Issue 3, p13-17, 5p

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