A laboratory framework for ongoing optimization of amplification-based genomic surveillance programs

Authors: Connie Lam, Jessica Johnson-Mackinnon, Kerri Basile, Winkie Fong, Carl J.E. Suster, Mailie Gall, Jessica Agius, Shona Chandra, Jenny Draper, Elena Martinez, Alexander Drew, Qinning Wang, Sharon C. Chen, Jen Kok, Dominic E. Dwyer, Vitali Sintchenko, Rebecca J. Rockett

Source: Microbiology Spectrum, Vol 11, Iss 6 (2023)

Subject Terms: genomic surveillance, whole genome sequencing, public health, viral sequencing, Microbiology, QR1-502

File Description: electronic resource

Relation: https://doaj.org/toc/2165-0497

Access URL: https://doaj.org/article/c8506cf497274da69108601f2e1d8cca

Co-infection with SARS-CoV-2 Omicron and Delta variants revealed by genomic surveillance

Authors: Rebecca J. Rockett, Jenny Draper, Mailie Gall, Eby M. Sim, Alicia Arnott, Jessica E. Agius, Jessica Johnson-Mackinnon, Winkie Fong, Elena Martinez, Alexander P. Drew, Clement Lee, Christine Ngo, Marc Ramsperger, Andrew N. Ginn, Qinning Wang, Michael Fennell, Danny Ko, Linda Hueston, Lukas Kairaitis, Edward C. Holmes, Matthew N. O’Sullivan, Sharon C.-A. Chen, Jen Kok, Dominic E. Dwyer, Vitali Sintchenko

Source: Nature Communications, Vol 13, Iss 1, Pp 1-7 (2022)

Subject Terms: Science

File Description: electronic resource

Relation: https://doaj.org/toc/2041-1723

Access URL: https://doaj.org/article/38f87202ab14461b82215251ef687d21

Off-season RSV epidemics in Australia after easing of COVID-19 restrictions

Authors: John-Sebastian Eden, Chisha Sikazwe, Ruopeng Xie, Yi-Mo Deng, Sheena G. Sullivan, Alice Michie, Avram Levy, Elena Cutmore, Christopher C. Blyth, Philip N. Britton, Nigel Crawford, Xiaomin Dong, Dominic E. Dwyer, Kimberly M. Edwards, Bethany A. Horsburgh, David Foley, Karina Kennedy, Cara Minney-Smith, David Speers, Rachel L. Tulloch, Edward C. Holmes, Vijaykrishna Dhanasekaran, David W. Smith, Jen Kok, Ian G. Barr, the Australian RSV study group

Source: Nature Communications, Vol 13, Iss 1, Pp 1-9 (2022)

Subject Terms: Science

File Description: electronic resource

Relation: https://doaj.org/toc/2041-1723

Access URL: https://doaj.org/article/59855129186547c79758c6dea99bfb72

Understanding the treatment benefit of hyperimmune anti-influenza intravenous immunoglobulin (Flu-IVIG) for severe human influenza

Authors: Hillary A. Vanderven, Deborah N. Wentworth, Win Min Han, Heidi Peck, Ian G. Barr, Richard T. Davey Jr., John H. Beigel, Dominic E. Dwyer, Mamta K. Jain, Brian Angus, Christian T. Brandt, Analia Mykietiuk, Matthew G. Law, James D. Neaton, Stephen J. Kent, for the INSIGHT FLU-IVIG Study Group

Source: JCI Insight, Vol 8, Iss 14 (2023)

Subject Terms: Immunology, Infectious disease, Medicine

File Description: electronic resource

Relation: https://doaj.org/toc/2379-3708

Access URL: https://doaj.org/article/2ec29e85521a462ea94335c590dd98b2

The utility of SARS‐CoV‐2‐specific serology in COVID‐19 diagnosis

Authors: Tasnim Hasan, H. Ling Lim, Jennifer Case, Linda Hueston, Shopna Bag, Dominic E. Dwyer, Matthew V.N. O'Sullivan

Source: Australian and New Zealand Journal of Public Health, Vol 45, Iss 6, Pp 616-621 (2021)

Subject Terms: covid‐19, serology, case definitions, Public aspects of medicine, RA1-1270

File Description: electronic resource

Relation: https://doaj.org/toc/1326-0200; https://doaj.org/toc/1753-6405

Access URL: https://doaj.org/article/4f2023f697ac48d593f72070fa12ae6f

COVID-19 pandemic: lessons learned from more than a century of pandemics and current vaccine development for pandemic control

Authors: Philippe Buchy, Yves Buisson, Otavio Cintra, Dominic E. Dwyer, Michael Nissen, Raul Ortiz de Lejarazu, Eskild Petersen

Source: International Journal of Infectious Diseases, Vol 112, Iss , Pp 300-317 (2021)

Subject Terms: SARS-CoV-2, pandemic, vaccine, COVID-19, Infectious and parasitic diseases, RC109-216

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S1201971221007529; https://doaj.org/toc/1201-9712

Access URL: https://doaj.org/article/e9e25a1cd5074a62a24bb65f96c8eab2

Documenting elimination of co-circulating COVID-19 clusters using genomics in New South Wales, Australia

Authors: Alicia Arnott, Jenny Draper, Rebecca J. Rockett, Connie Lam, Rosemarie Sadsad, Mailie Gall, Elena Martinez, Roy Byun, Jennie Musto, Ben Marais, Sharon C.-A. Chen, Jen Kok, Dominic E. Dwyer, Vitali Sintchenko

Source: BMC Research Notes, Vol 14, Iss 1, Pp 1-4 (2021)

Subject Terms: SARS-CoV-2, Genomic epidemiology, Bioinformatics, Whole genome sequencing, Australia, Medicine, Biology (General), QH301-705.5, Science (General), Q1-390

File Description: electronic resource

Relation: https://doaj.org/toc/1756-0500

Access URL: https://doaj.org/article/00334b117b2c4864a7b36ed6aa576f8e

Guiding the design of SARS-CoV-2 genomic surveillance by estimating the resolution of outbreak detection

Authors: Carl J. E. Suster, Alicia Arnott, Grace Blackwell, Mailie Gall, Jenny Draper, Elena Martinez, Alexander P. Drew, Rebecca J. Rockett, Sharon C.-A. Chen, Jen Kok, Dominic E. Dwyer, Vitali Sintchenko

Source: Frontiers in Public Health, Vol 10 (2022)

Subject Terms: genomic surveillance, public health, pathogen genomics, SARS-CoV-2, outbreak detection, Public aspects of medicine, RA1-1270

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fpubh.2022.1004201/full; https://doaj.org/toc/2296-2565

Access URL: https://doaj.org/article/d01f1ef409bf462c8dbaf704c2cd6af4

Early impact of the Australian national shingles vaccination program with the herpes zoster live attenuated vaccine

Authors: John Litt, Robert Booy, Debra Bourke, Dominic E. Dwyer, Alan Leeb, Philip McCloud, Alicia N. Stein, Michael Woodward, Anthony L. Cunningham

Source: Human Vaccines & Immunotherapeutics, Vol 16, Iss 12, Pp 3081-3089 (2020)

Subject Terms: herpes zoster, herpes zoster vaccine, postherpetic neuralgia, shingles, varicella zoster virus, zoster virus vaccine live, Immunologic diseases. Allergy, RC581-607, Therapeutics. Pharmacology, RM1-950

File Description: electronic resource

Relation: https://doaj.org/toc/2164-5515; https://doaj.org/toc/2164-554X

Access URL: https://doaj.org/article/2eabb95970d9419d82ef53ec6d6b6f4a

Impact of an Open Access Nationwide Treatment Model on Hepatitis C Virus Antiviral Drug Resistance

Authors: Mark W. Douglas, Enoch S.E. Tay, Dao Sen Wang, Adrian T.L. Ong, Caroline Wilson, Amy Phu, Jen Kok, Dominic E. Dwyer, Rowena A. Bull, Andrew R. Lloyd, Tanya L. Applegate, Gregory J. Dore, Anita Y. Howe, Richard Harrigan, Jacob George

Source: Hepatology Communications, Vol 4, Iss 6, Pp 904-915 (2020)

Subject Terms: Diseases of the digestive system. Gastroenterology, RC799-869

File Description: electronic resource

Relation: https://doaj.org/toc/2471-254X

Access URL: https://doaj.org/article/2bc40cd708cb429b96c283e8c3599155

Maintenance of broad neutralizing antibodies and memory B cells 1 year post-infection is predicted by SARS-CoV-2-specific CD4+ T cell responses

Authors: Harikrishnan Balachandran, Chansavath Phetsouphanh, David Agapiou, Anurag Adhikari, Chaturaka Rodrigo, Mohamed Hammoud, Lok Bahadur Shrestha, Elizabeth Keoshkerian, Money Gupta, Stuart Turville, Daniel Christ, Cecile King, Sarah C. Sasson, Adam Bartlett, Branka Grubor-Bauk, William Rawlinson, Anupriya Aggarwal, Alberto Ospina Stella, Vera Klemm, Michael M. Mina, Jeffrey J. Post, Bernard Hudson, Nicky Gilroy, Pam Konecny, Golo Ahlenstiel, Dominic E. Dwyer, Tania C. Sorrell, Anthony Kelleher, Nicodemus Tedla, Andrew R. Lloyd, Marianne Martinello, Rowena A. Bull

Source: Cell Reports, Vol 38, Iss 6, Pp 110345- (2022)

Subject Terms: SARS-CoV-2, 12 months after SARS-CoV-2 infection, RBD-specific memory B cells longevity, protection efficacy prediction, SARS-CoV-2 antibody duration, SARS-CoV-2 neutralization, Biology (General), QH301-705.5

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S2211124722000614; https://doaj.org/toc/2211-1247

Access URL: https://doaj.org/article/d1686078a040413a867cbc08aa5e8b00

RAPIDprep: A Simple, Fast Protocol for RNA Metagenomic Sequencing of Clinical Samples

Authors: Rachel L. Tulloch, Karan Kim, Chisha Sikazwe, Alice Michie, Rebecca Burrell, Edward C. Holmes, Dominic E. Dwyer, Philip N. Britton, Jen Kok, John-Sebastian Eden

Source: Viruses, Vol 15, Iss 4, p 1006 (2023)

Subject Terms: RNA sequencing, metagenomics, infectious diseases, diagnostics, Microbiology, QR1-502

File Description: electronic resource

Relation: https://www.mdpi.com/1999-4915/15/4/1006; https://doaj.org/toc/1999-4915

Access URL: https://doaj.org/article/985eda2126524971807131c30a755b33

Arthropod-Borne Flaviviruses in Pregnancy

Authors: Annaleise R. Howard-Jones, David Pham, Rebecca Sparks, Susan Maddocks, Dominic E. Dwyer, Jen Kok, Kerri Basile

Source: Microorganisms, Vol 11, Iss 2, p 433 (2023)

Subject Terms: flavivirus, pregnancy, neonate, Zika virus, Dengue virus, West Nile virus, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://www.mdpi.com/2076-2607/11/2/433; https://doaj.org/toc/2076-2607

Access URL: https://doaj.org/article/c1bd85b07a7443dfababe46f5388c0b4

Human coronavirus data from four clinical trials of masks and respirators

Authors: C. Raina MacIntyre, Abrar A. Chughtai, Holly Seale, Dominic E. Dwyer, Wang Quanyi

Source: International Journal of Infectious Diseases, Vol 96, Iss , Pp 631-633 (2020)

Subject Terms: Infectious and parasitic diseases, RC109-216

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S1201971220303994; https://doaj.org/toc/1201-9712

Access URL: https://doaj.org/article/0d453f92463842df8cc77e0370bddaea

Improved Neutralisation of the SARS-CoV-2 Omicron Variant following a Booster Dose of Pfizer-BioNTech (BNT162b2) COVID-19 Vaccine

Authors: Kerri Basile, Rebecca J. Rockett, Kenneth McPhie, Michael Fennell, Jessica Johnson-Mackinnon, Jessica E. Agius, Winkie Fong, Hossinur Rahman, Danny Ko, Linda Donavan, Linda Hueston, Connie Lam, Alicia Arnott, Sharon C.-A. Chen, Susan Maddocks, Matthew V. O’Sullivan, Dominic E. Dwyer, Vitali Sintchenko, Jen Kok

Source: Viruses, Vol 14, Iss 9, p 2023 (2022)

Subject Terms: SARS-CoV-2, COVID-19, VOC, Omicron, neutralising antibodies, immunity, Microbiology, QR1-502

File Description: electronic resource

Relation: https://www.mdpi.com/1999-4915/14/9/2023; https://doaj.org/toc/1999-4915

Access URL: https://doaj.org/article/8dda37bba9e34d4c9c7bf42985c2af33

Emerging Genotype IV Japanese Encephalitis Virus Outbreak in New South Wales, Australia

Authors: Annaleise R. Howard-Jones, David Pham, Neisha Jeoffreys, John-Sebastian Eden, Linda Hueston, Alison M. Kesson, Vanathi Nagendra, Harsha Samarasekara, Peter Newton, Sharon C.-A. Chen, Matthew V. O’Sullivan, Susan Maddocks, Dominic E. Dwyer, Jen Kok

Source: Viruses, Vol 14, Iss 9, p 1853 (2022)

Subject Terms: Japanese encephalitis, flavivirus, outbreak, serology, nucleic acid testing, molecular diagnostics, Microbiology, QR1-502

File Description: electronic resource

Relation: https://www.mdpi.com/1999-4915/14/9/1853; https://doaj.org/toc/1999-4915

Access URL: https://doaj.org/article/2d5ef9e8524745d0817224d9e86434fa

Development and Validation of an In-House Real-Time Reverse-Transcriptase Polymerase Chain Reaction Assay for SARS-CoV-2 Omicron Lineage Subtyping between BA.1 and BA.2

Authors: David Pham, Susan Maddocks, Dominic E. Dwyer, Vitali Sintchenko, Jen Kok, Rebecca J. Rockett

Source: Viruses, Vol 14, Iss 8, p 1760 (2022)

Subject Terms: SARS-CoV-2, variants of concern, COVID-19, real-time RT-PCR, Omicron, sublineage, Microbiology, QR1-502

File Description: electronic resource

Relation: https://www.mdpi.com/1999-4915/14/8/1760; https://doaj.org/toc/1999-4915

Access URL: https://doaj.org/article/bb9b9627cf8b4c65ab12ea79ed23da7e

Emerging recombinant noroviruses identified by clinical and waste water screening

Authors: Jennifer H. Lun, Joanne Hewitt, Alefiya Sitabkhan, John-Sebastian Eden, Daniel Enosi Tuipulotu, Natalie E. Netzler, Leigh Morrell, Juan Merif, Richard Jones, Bixing Huang, David Warrilow, Kelly-Anne Ressler, Mark J. Ferson, Dominic E. Dwyer, Jen Kok, William D. Rawlinson, Daniel Deere, Nicholas D. Crosbie, Peter A. White

Source: Emerging Microbes and Infections, Vol 7, Iss 1, Pp 1-14 (2018)

Subject Terms: Infectious and parasitic diseases, RC109-216, Microbiology, QR1-502

File Description: electronic resource

Relation: http://link.springer.com/article/10.1038/s41426-018-0047-8; https://doaj.org/toc/2222-1751

Access URL: https://doaj.org/article/149841c2931745669ca60751f6ed228f

Acute exercise decreases vaccine reactions following influenza vaccination among older adults

Authors: Erika Bohn-Goldbaum, April Pascoe, Maria Fiatarone Singh, Nalin Singh, Jen Kok, Dominic E. Dwyer, Elizabeth Mathieson, Robert Booy, Kate M. Edwards

Source: Brain, Behavior, & Immunity - Health, Vol 1, Iss , Pp 100009- (2020)

Subject Terms: Acute exercise, Vaccination, Immune function, Older adults, Neurosciences. Biological psychiatry. Neuropsychiatry, RC321-571

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S2666354619300092; https://doaj.org/toc/2666-3546

Access URL: https://doaj.org/article/0726efb2ca5a442ea358605edf91c921

An Amplicon-Based Approach for the Whole-Genome Sequencing of Human Metapneumovirus

Authors: Rachel L. Tulloch, Jen Kok, Ian Carter, Dominic E. Dwyer, John-Sebastian Eden

Source: Viruses, Vol 13, Iss 3, p 499 (2021)

Subject Terms: human metapneumovirus, whole-genome sequencing, genomic epidemiology, Microbiology, QR1-502

File Description: electronic resource

Relation: https://www.mdpi.com/1999-4915/13/3/499; https://doaj.org/toc/1999-4915

Access URL: https://doaj.org/article/19a6bd24e2a6473ca223428f4f31440c