Fast computation of approximate weak common intervals in multiple indeterminate strings

Authors: Doerr, Daniel, Moret, Bernard M. E.

Subject Terms: Computer Science - Data Structures and Algorithms

Access URL: http://arxiv.org/abs/2304.02657

Medical device handle

Small Parsimony for Natural Genomes in the DCJ-Indel Model

Authors: Doerr, Daniel, Chauve, Cedric

Subject Terms: Computer Science - Data Structures and Algorithms

Access URL: http://arxiv.org/abs/2108.04297

Computing the rearrangement distance of natural genomes

Authors: Bohnenkämper, Leonard, Braga, Marília D. V., Doerr, Daniel, Stoye, Jens

Source: Lecture Notes in Computer Science, vol 12074, 2020

Subject Terms: Computer Science - Data Structures and Algorithms

Access URL: http://arxiv.org/abs/2001.02139

Pan-conserved segment tags identify ultra-conserved sequences across assemblies in the human pangenome

Authors: Liao, Wen-Wei, Asri, Mobin, Ebler, Jana, Doerr, Daniel, Haukness, Marina, Hickey, Glenn, Lu, Shuangjia, Lucas, Julian K., Monlong, Jean, Abel, Haley J., Buonaiuto, Silvia, Chang, Xian H., Cheng, Haoyu, Chu, Justin, Colonna, Vincenza, Eizenga, Jordan M., Feng, Xiaowen, Fischer, Christian, Fulton, Robert S., Garg, Shilpa, Groza, Cristian, Guarracino, Andrea, Harvey, William T., Heumos, Simon, Howe, Kerstin, Jain, Miten, Lu, Tsung-Yu, Markello, Charles, Martin, Fergal J., Mitchell, Matthew W., Munson, Katherine M., Mwaniki, Moses Njagi, Novak, Adam M., Olsen, Hugh E., Pesout, Trevor, Porubsky, David, Prins, Pjotr, Sibbesen, Jonas A., Tomlinson, Chad, Villani, Flavia, Vollger, Mitchell R., Antonacci-Fulton, Lucinda L., Baid, Gunjan, Baker, Carl A., Belyaeva, Anastasiya, Billis, Konstantinos, Carroll, Andrew, Chang, Pi-Chuan, Cody, Sarah, Cook, Daniel E., Cornejo, Omar E., Diekhans, Mark, Ebert, Peter, Fairley, Susan, Fedrigo, Olivier, Felsenfeld, Adam L., Formenti, Giulio, Frankish, Adam, Gao, Yan, Giron, Carlos Garcia, Green, Richard E., Haggerty, Leanne, Hoekzema, Kendra, Hourlier, Thibaut, Ji, Hanlee P., Kolesnikov, Alexey, Korbel, Jan O., Kordosky, Jennifer, Lee, HoJoon, Lewis, Alexandra P., Magalhães, Hugo, Marco-Sola, Santiago, Marijon, Pierre, McDaniel, Jennifer, Mountcastle, Jacquelyn, Nattestad, Maria, Olson, Nathan D., Puiu, Daniela, Regier, Allison A., Rhie, Arang, Sacco, Samuel, Sanders, Ashley D., Schneider, Valerie A., Schultz, Baergen I., Shafin, Kishwar, Sirén, Jouni, Smith, Michael W., Sofia, Heidi J., Abou Tayoun, Ahmad N., Thibaud-Nissen, Françoise, Tricomi, Francesca Floriana, Wagner, Justin, Wood, Jonathan M.D., Zimin, Aleksey V., Popejoy, Alice B., Bourque, Guillaume, Chaisson, Mark J.P., Flicek, Paul, Phillippy, Adam M., Zook, Justin M., Eichler, Evan E., Haussler, David, Jarvis, Erich D., Miga, Karen H., Wang, Ting, Garrison, Erik, Marschall, Tobias, Hall, Ira, Li, Heng, Paten, Benedict, Greer, Stephanie U., Pavlichin, Dmitri S., Zhou, Bo, Urban, Alexander E., Weissman, Tsachy

Source: In Cell Reports Methods 28 August 2023 3(8)

Active and repressed biosynthetic gene clusters have spatially distinct chromosome states

Authors: Nützmann, Hans-Wilhelm, Doerr, Daniel, Ramírez-Colmenero, América, Sotelo-Fonseca, Jesús Emiliano, Wegel, Eva, Di Stefano, Marco, Wingett, Steven W., Fraser, Peter, Hurst, Laurence, Fernandez-Valverde, Selene L., Osbourn, Anne

Source: Proceedings of the National Academy of Sciences of the United States of America, 2020 Jun . 117(24), 13800-13809.

Access URL: https://www.jstor.org/stable/26968531

The gene family-free median of three

Authors: Doerr, Daniel, Feijao, Pedro, Balaban, Metin, Chauve, Cedric

Subject Terms: Computer Science - Data Structures and Algorithms, Quantitative Biology - Quantitative Methods

Access URL: http://arxiv.org/abs/1606.05910

Panacus: fast and exact pangenome growth and core size estimation.

Authors: Parmigiani, Luca, Garrison, Erik, Stoye, Jens, Marschall, Tobias, Doerr, Daniel

Source: Bioinformatics; Dec2024, Vol. 40 Issue 12, p1-5, 5p

Subject Terms: OPEN source software, PAN-genome, SPECIES diversity, SOURCE code, BASE pairs

Powered lavage handle and associated use therefore

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Retrieval bag collar

Ergonomic multi-functional handle for use with a medical instrument

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Handle for use with a medical retrieval instrument

Method and device for monitoring a cryopreserved biological sample

Ergonomical trigger handle

Free weight organization system

Ergonomic multi-functional handle for use with a medical instrument

Ergonomical pull handle