Spatiotemporal heterogeneity in malaria transmission across Indonesia: analysis of routine surveillance data 2010–2019.

Authors: Djaafara, Bimandra A.^1,2,3 (AUTHOR) bimandra.djaafara@gmail.com, Sherrard-Smith, Ellie^1,4 (AUTHOR), Churcher, Thomas S.¹ (AUTHOR), Fajariyani, Sri Budi⁵ (AUTHOR), Prameswari, Hellen Dewi⁵ (AUTHOR), Herdiana, Herdiana⁶ (AUTHOR), Puspadewi, Riskha Tiara⁵ (AUTHOR), Lestari, Karina D.² (AUTHOR), Elyazar, Iqbal R. F.² (AUTHOR), Walker, Patrick G. T.¹ (AUTHOR)

Source: BMC Medicine. 3/5/2025, Vol. 23 Issue 1, p1-12. 12p.

Subject Terms: *MALARIA, *PLASMODIUM vivax, *DISPERSAL (Ecology), *POPULATION statistics, *INDONESIANS, *EPIDEMIOLOGICAL research, *DISTRIBUTION (Probability theory), *EPIDEMIOLOGY

Geographic Terms: INDONESIA, PAPUA (Indonesia)

The societal value of SARS-CoV-2 booster vaccination in Indonesia

Authors: Johnson, Rob, Djaafara, Bimandra, Haw, David, Doohan, Patrick, Forchini, Giovanni, Pianella, Matteo, Ferguson, Neil, Smith, Peter C., Hauck, Katharina D.

Source: Vaccine. 41(11):1885-1891

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100184378296.0x000001&indx=1&recIds=ETOCvdc_100184378296.0x000001

Quantifying the effect of delaying the second COVID-19 vaccine dose in England: a mathematical modelling study

Authors: Imai, Natsuko, Rawson, Thomas, Knock, Edward S, Sonabend, Raphael, Elmaci, Yasin, Perez-Guzman, Pablo N, Whittles, Lilith K, Kanapram, Divya Thekke, Gaythorpe, Katy A M, Hinsley, Wes, Djaafara, Bimandra A, Wang, Haowei, Fraser, Keith, FitzJohn, Richard G, Hogan, Alexandra B, Doohan, Patrick, Ghani, Azra C, Ferguson, Neil M, Baguelin, Marc, Cori, Anne

Source: Lancet.Public health. 8(3):e174-e183

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100183978093.0x000001&indx=1&recIds=ETOCvdc_100183978093.0x000001

Data pipelines in a public health emergency: The human in the machine

Authors: Gaythorpe, Katy A.M., Fitzjohn, Rich G., Hinsley, Wes, Imai, Natsuko, Knock, Edward S., Perez Guzman, Pablo N., Djaafara, Bimandra, Fraser, Keith, Baguelin, Marc, Ferguson, Neil M.

Source: In Epidemics June 2023 43

Quantifying spatial heterogeneity of malaria in the endemic Papua region of Indonesia: Analysis of epidemiological surveillance data

Authors: Fadilah, Ihsan, Djaafara, Bimandra A., Lestari, Karina D., Fajariyani, Sri B., Sunandar, Edi, Makamur, Billy G., Wopari, Beeri, Mabui, Silas, Ekawati, Lenny L., Sagara, Rahmat, Lina, Rosa N., Argana, Guntur, Ginting, Desriana E., Sumiwi, Maria E., Laihad, Ferdinand J., Mueller, Ivo, McVernon, Jodie, Baird, J. Kevin, Surendra, Henry, Elyazar, Iqbal R.F.

Source: In The Lancet Regional Health - Southeast Asia October 2022 5

Non-pharmaceutical interventions, vaccination, and the SARS-CoV-2 delta variant in England: a mathematical modelling study

Authors: Sonabend, Raphael, Whittles, Lilith K, Imai, Natsuko, Perez-Guzman, Pablo N, Knock, Edward S, Rawson, Thomas, Gaythorpe, Katy A M, Djaafara, Bimandra A, Hinsley, Wes, FitzJohn, Richard G, Lees, John A, Kanapram, Divya Thekke, Volz, Erik M, Ghani, Azra C, Ferguson, Neil M, Baguelin, Marc, Cori, Anne ^*

Source: In The Lancet 13 November 2021 398(10313):1825-1835

Clinical characteristics and mortality associated with COVID-19 in Jakarta, Indonesia: A hospital-based retrospective cohort study

Authors: Surendra, Henry, Elyazar, Iqbal RF, Djaafara, Bimandra A, Ekawati, Lenny L, Saraswati, Kartika, Adrian, Verry, Widyastuti, Oktavia, Dwi, Salama, Ngabila, Lina, Rosa N, Andrianto, Adhi, Lestari, Karina D, Burhan, Erlina, Shankar, Anuraj H, Thwaites, Guy, Baird, J. Kevin, Hamers, Raph L.

Source: In The Lancet Regional Health - Western Pacific April 2021 9

A Quantitative Framework for Defining the End of an Infectious Disease Outbreak: Application to Ebola Virus Disease

Authors: Djaafara, Bimandra A, Imai, Natsuko, Hamblion, Esther, Impouma, Benido, Donnelly, Christl A, Cori, Anne

Source: American journal of epidemiology. 190(4):642-651

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100132576115.0x000001&indx=1&recIds=ETOCvdc_100132576115.0x000001

Mitigating risks of malaria and other vector-borne diseases in the new capital city of Indonesia.

Authors: Surendra, Henry, Djaafara, Bimandra A., Prameswari, Helen D., Supriyanto, Dedy, Waluyo, Ponco, Basuki, Setyo B., Herdiana, Herdiana, Ndoen, Ermi, Siswanto, Siswanto, Lubis, Inke ND, Liu, Xiaoyue, Mishra, Swapnil, Fornace, Kimberly M., Elyazar, Iqbal RF

Source: Nature Communications; 12/5/2024, Vol. 15 Issue 1, p1-4, 4p

Subject Terms: VECTOR-borne diseases, ADAPTIVE control systems, COMMUNICABLE diseases, INFRASTRUCTURE (Economics), MALARIA, BIODIVERSITY

Potential impact of the COVID-19 pandemic on HIV, tuberculosis, and malaria in low-income and middle-income countries: a modelling study

Authors: Hogan, Alexandra B, Jewell, Britta L, Sherrard-Smith, Ellie, Vesga, Juan F, Watson, Oliver J, Whittaker, Charles, Hamlet, Arran, Smith, Jennifer A, Winskill, Peter, Verity, Robert, Baguelin, Marc, Lees, John A, Whittles, Lilith K, Ainslie, Kylie E C, Bhatt, Samir, Boonyasiri, Adhiratha, Brazeau, Nicholas F, Cattarino, Lorenzo, Cooper, Laura V, Coupland, Helen, Cuomo-Dannenburg, Gina, Dighe, Amy, Djaafara, Bimandra A, Donnelly, Christl A, Eaton, Jeff W, van Elsland, Sabine L, FitzJohn, Richard G, Fu, Han, Gaythorpe, Katy A M, Green, William, Haw, David J, Hayes, Sarah, Hinsley, Wes, Imai, Natsuko, Laydon, Daniel J, Mangal, Tara D, Mellan, Thomas A, Mishra, Swapnil, Nedjati-Gilani, Gemma, Parag, Kris V, Thompson, Hayley A, Unwin, H Juliette T, Vollmer, Michaela A C, Walters, Caroline E, Wang, Haowei, Wang, Yuanrong, Xi, Xiaoyue, Ferguson, Neil M, Okell, Lucy C, Churcher, Thomas S, Arinaminpathy, Nimalan, Ghani, Azra C, Walker, Patrick G T, Hallett, Timothy B ^*

Source: In The Lancet Global Health September 2020 8(9):e1132-e1141

EXCESS MORTALITY DURING THE FIRST TEN MONTHS OF COVID-19 EPIDEMIC AT JAKARTA, INDONESIA

Authors: Elyazar, Iqbal RF, Surendra, Henry, Ekawati, Lenny L, Djaafara, Bimandra A., Nurhasim, Ahmad, Arif, Ahmad, Hidayana, Irma, Oktavia, Dwi, Adrian, Verry, Salama, Ngabila, Hamdi, Imam, Andrianto, Adhi, Lina, Rosa N, Lestari, Karin D, Shankar, Anuraj H, Hamers, Raph L, Thwaites, Guy, Baird, J. Kevin

Source: International journal of infectious diseases. 130(S2):S38-S38

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100194235644.0x000001&indx=1&recIds=ETOCvdc_100194235644.0x000001

Using syndromic measures of mortality to capture the dynamics of COVID-19 in Java, Indonesia, in the context of vaccination rollout.

Authors: Djaafara, Bimandra A.^1,2 (AUTHOR) bimandra.djaafara15@imperial.ac.uk, Whittaker, Charles¹ (AUTHOR), Watson, Oliver J.¹ (AUTHOR), Verity, Robert¹ (AUTHOR), Brazeau, Nicholas F.¹ (AUTHOR), Widyastuti³ (AUTHOR), Oktavia, Dwi³ (AUTHOR), Adrian, Verry³ (AUTHOR), Salama, Ngabila³ (AUTHOR), Bhatia, Sangeeta¹ (AUTHOR), Nouvellet, Pierre^1,4 (AUTHOR), Sherrard-Smith, Ellie¹ (AUTHOR), Churcher, Thomas S.¹ (AUTHOR), Surendra, Henry^2,5 (AUTHOR), Lina, Rosa N.² (AUTHOR), Ekawati, Lenny L.² (AUTHOR), Lestari, Karina D.² (AUTHOR), Andrianto, Adhi² (AUTHOR), Thwaites, Guy^6,7 (AUTHOR), Baird, J. Kevin^2,7 (AUTHOR)

Source: BMC Medicine. 6/18/2021, Vol. 19 Issue 1, p1-13. 13p.

Subject Terms: *COVID-19, *VACCINATION, *DEATH rate, *MORTALITY, *RURAL geography

Geographic Terms: JAKARTA (Indonesia), INDONESIA

Understanding the Potential Impact of Different Drug Properties on Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Transmission and Disease Burden: A Modelling Analysis.

Authors: Whittaker, Charles, Watson, Oliver J, Alvarez-Moreno, Carlos, Angkasekwinai, Nasikarn, Boonyasiri, Adhiratha, Triana, Luis Carlos, Chanda, Duncan, Charoenpong, Lantharita, Chayakulkeeree, Methee, Cooke, Graham S, Croda, Julio, Cucunubá, Zulma M, Djaafara, Bimandra A, Estofolete, Cassia F, Grillet, Maria Eugenia, Faria, Nuno R, Costa, Silvia Figueiredo, Forero-Peña, David A, Gibb, Diana M, Gordon, Anthony C

Source: Clinical Infectious Diseases; Jul2022, Vol. 75 Issue 1, pe224-e233, 10p

Subject Terms: INTENSIVE care units, COVID-19, MIDDLE-income countries, DEVELOPED countries, DEXAMETHASONE, OXYGEN consumption, DRUG design, SOCIOECONOMIC factors, SEVERITY of illness index, INFECTIOUS disease transmission, HOSPITAL care, LOW-income countries

Under-reporting of deaths limits our understanding of true burden of covid-19.

Authors: Whittaker, Charles, Walker, Patrick G. T., Alhaffar, Mervat, Hamlet, Arran, Djaafara, Bimandra A., Ghani, Azra, Ferguson, Neil, Dahab, Maysoon, Checchi, Francesco, Watson, Oliver J.

Source: BMJ: British Medical Journal; 11/6/2021, Vol. 375 Issue 8313, pn2239-5, 5p

Subject Terms: CAUSES of death, PUBLIC health laws, STATISTICS, DISCLOSURE, COVID-19, COMMUNICABLE diseases, HEALTH services accessibility, DATABASE management, ACCESS to information, ECONOMIC aspects of diseases

Key epidemiological drivers and impact of interventions in the 2020 SARS-CoV-2 epidemic in England.

Authors: Knock, Edward S., Whittles, Lilith K., Lees, John A., Perez-Guzman, Pablo N., Verity, Robert, FitzJohn, Richard G., Gaythorpe, Katy A. M., Imai, Natsuko, Hinsley, Wes, Okell, Lucy C., Rosello, Alicia, Kantas, Nikolas, Walters, Caroline E., Bhatia, Sangeeta, Watson, Oliver J., Whittaker, Charlie, Cattarino, Lorenzo, Boonyasiri, Adhiratha, Djaafara, Bimandra A., Fraser, Keith

Source: Science Translational Medicine; 7/14/2021, Vol. 13 Issue 602, p1-11, 11p

Subject Terms: SARS-CoV-2, COVID-19, HERD immunity, STAY-at-home orders, VACCINATION, EPIDEMICS

Geographic Terms: ENGLAND

Modeling Annual Parasite Incidence of Malaria in Indonesia of 2017 using Spatial Regime.

Authors: Djuraidah, Anik, Silvianti, Pika, Djaafara, Bimandra, Laila, Siti Nur

Source: Indonesian Journal of Geography; 2021, Vol. 53 Issue 2, p185-191, 7p

Subject Terms: MALARIA, PLASMODIUM, COMMUNICABLE diseases, BLOOD testing, ANOPHELES, MOSQUITOES

Geographic Terms: INDONESIA

Leveraging community mortality indicators to infer COVID-19 mortality and transmission dynamics in Damascus, Syria.

Authors: Watson, Oliver J., Alhaffar, Mervat, Mehchy, Zaki, Whittaker, Charles, Akil, Zack, Brazeau, Nicholas F., Cuomo-Dannenburg, Gina, Hamlet, Arran, Thompson, Hayley A., Baguelin, Marc, FitzJohn, Richard G., Knock, Edward, Lees, John A., Whittles, Lilith K., Mellan, Thomas, Winskill, Peter, Imperial College COVID-19 Response Team, Bhatt, Samir, Djaafara, Bimandra A., Donnelly, Christl A.

Source: Nature Communications; 4/22/2021, Vol. 12 Issue 1, p1-10, 10p

Subject Terms: COVID-19, COVID-19 pandemic, HOSPITAL size, PANDEMICS, MORTALITY, DEATH rate

Geographic Terms: DAMASCUS (Syria)

Reduction in mobility and COVID-19 transmission.

Authors: Nouvellet, Pierre, Bhatia, Sangeeta, Cori, Anne, Ainslie, Kylie E. C., Baguelin, Marc, Bhatt, Samir, Boonyasiri, Adhiratha, Brazeau, Nicholas F., Cattarino, Lorenzo, Cooper, Laura V., Coupland, Helen, Cucunuba, Zulma M., Cuomo-Dannenburg, Gina, Dighe, Amy, Djaafara, Bimandra A., Dorigatti, Ilaria, Eales, Oliver D., van Elsland, Sabine L., Nascimento, Fabricia F., FitzJohn, Richard G.

Source: Nature Communications; 2/17/2021, Vol. 12 Issue 1, p1-9, 9p

Subject Terms: COVID-19, COVID-19 pandemic, SOCIAL distancing, PANDEMICS, SOCIAL movements, SARS-CoV-2

SARS-CoV-2 infection prevalence on repatriation flights from Wuhan City, China.

Authors: Thompson, Hayley A, Imai, Natsuko, Dighe, Amy, Ainslie, Kylie E C, Baguelin, Marc, Bhatia, Sangeeta, Bhatt, Samir, Boonyasiri, Adhiratha, Boyd, Olivia, Brazeau, Nicholas F, Cattarino, Lorenzo, Cooper, Laura V, Coupland, Helen, Cucunuba, Zulma, Cuomo-Dannenburg, Gina, Djaafara, Bimandra, Dorigatti, Ilaria, Elsland, Sabine van, FitzJohn, Richard, Fu, Han

Source: Journal of Travel Medicine; Dec2020, Vol. 27 Issue 8, p1-3, 3p

Subject Terms: SARS-CoV-2, REPATRIATION, INFECTION

Geographic Terms: WUHAN (China), CHINA

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