Spatial and temporal organization of the genome: Current state and future aims of the 4D nucleome project

Authors: Dekker, Job, Alber, Frank, Aufmkolk, Sarah, Beliveau, Brian J., Bruneau, Benoit G., Belmont, Andrew S., Bintu, Lacramioara, Boettiger, Alistair, Calandrelli, Riccardo, Disteche, Christine M., Gilbert, David M., Gregor, Thomas, Hansen, Anders S., Huang, Bo, Huangfu, Danwei, Kalhor, Reza, Leslie, Christina S., Li, Wenbo, Li, Yun, Ma, Jian, Noble, William S., Park, Peter J., Phillips-Cremins, Jennifer E., Pollard, Katherine S., Rafelski, Susanne M., Ren, Bing, Ruan, Yijun, Shav-Tal, Yaron, Shen, Yin, Shendure, Jay, Shu, Xiaokun, Strambio-De-Castillia, Caterina, Vertii, Anastassiia, Zhang, Huaiying, Zhong, Sheng

Source: Molecular cell. 83(15):2624-2640

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100194885251.0x000001&indx=1&recIds=ETOCvdc_100194885251.0x000001

CTCF-mediated insulation and chromatin environment modulate Car5b escape from X inactivation.

Authors: Fang, He, Tronco, Ana R., Bonora, Giancarlo, Nguyen, Truong, Thakur, Jitendra, Berletch, Joel B., Filippova, Galina N., Henikoff, Steven, Shendure, Jay, Noble, William S., Duan, Zhijun, Disteche, Christine M., Deng, Xinxian

Source: BMC Biology; 3/3/2025, Vol. 23 Issue 1, p1-20, 20p

Subject Terms: LIFE sciences, BINDING sites, SOMATIC cells, CHROMOSOMES, HETEROCHROMATIN

Cross-species imputation and comparison of single-cell transcriptomic profiles.

Authors: Zhang, Ran, Yang, Mu, Schreiber, Jacob, O'Day, Diana R., Turner, James M. A., Shendure, Jay, Noble, William Stafford, Disteche, Christine M., Deng, Xinxian

Source: Genome Biology; 2/26/2025, Vol. 26 Issue 1, p1-22, 22p

KDM6A facilitates Xist upregulation at the onset of X inactivation.

Authors: Lin, Josephine, Zhang, Jinli, Ma, Li, Fang, He, Ma, Rui, Groneck, Camille, Filippova, Galina N., Deng, Xinxian, Kinoshita, Chizuru, Young, Jessica E., Ma, Wenxiu, Disteche, Christine M., Berletch, Joel B.

Source: Biology of Sex Differences; 1/3/2025, Vol. 16 Issue 1, p1-17, 17p

Subject Terms: GENE expression, X chromosome, GENETIC overexpression, LIFE sciences, LINCRNA

X-chromosome regulation and sex differences in brain anatomy

Authors: Raznahan, Armin ^*, Disteche, Christine M.

Source: In Neuroscience and Biobehavioral Reviews January 2021 120:28-47

X-factors in human disease: impact of gene content and dosage regulation

Authors: Fang, He, Deng, Xinxian, Disteche, Christine M

Source: Human molecular genetics. 30(R2):R285-R295

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100131741769.0x000001&indx=1&recIds=ETOCvdc_100131741769.0x000001

Sci-Hi-C: A single-cell Hi-C method for mapping 3D genome organization in large number of single cells

Authors: Ramani, Vijay, Deng, Xinxian, Qiu, Ruolan, Lee, Choli, Disteche, Christine M., Noble, William S., Shendure, Jay, Duan, Zhijun

Source: In Methods 1 January 2020 170:61-68

High-Throughput Single-Cell Sequencing with Linear Amplification

Authors: Yin, Yi, Jiang, Yue, Lam, Kwan-Wood Gabriel, Berletch, Joel B., Disteche, Christine M., Noble, William S., Steemers, Frank J., Camerini-Otero, R. Daniel, Adey, Andrew C., Shendure, Jay

Source: In Molecular Cell 21 November 2019 76(4):676-690

Multiomic characterization of RNA microenvironments by oligonucleotide-mediated proximity-interactome mapping

Authors: Tsue, Ashley F., Kania, Evan E., Lei, Diana Q., Fields, Rose, McGann, Christopher D., Marciniak, Daphnée M., Hershberg, Elliot A., Deng, Xinxian, Kihiu, Maryanne, Ong, Shao-En, Disteche, Christine M., Kugel, Sita, Beliveau, Brian J., Schweppe, Devin K., Shechner, David M.

Source: Nature Methods; November 2024, Vol. 21 Issue: 11 p2058-2071, 14p

A Single-Cell Atlas of In Vivo Mammalian Chromatin Accessibility

Authors: Cusanovich, Darren A., Hill, Andrew J., Aghamirzaie, Delasa, Daza, Riza M., Pliner, Hannah A., Berletch, Joel B., Filippova, Galina N., Huang, Xingfan, Christiansen, Lena, DeWitt, William S., Lee, Choli, Regalado, Samuel G., Read, David F., Steemers, Frank J., Disteche, Christine M., Trapnell, Cole, Shendure, Jay

Source: In Cell 23 August 2018 174(5):1309-1324

Using DNase Hi-C techniques to map global and local three-dimensional genome architecture at high resolution

Authors: Ma, Wenxiu, Ay, Ferhat, Lee, Choli, Gulsoy, Gunhan, Deng, Xinxian, Cook, Savannah, Hesson, Jennifer, Cavanaugh, Christopher, Ware, Carol B., Krumm, Anton, Shendure, Jay, Blau, C. Anthony, Disteche, Christine M., Noble, William S., Duan, ZhiJun

Source: In Methods 1 June 2018 142:59-73

Expanding phenotype with severe midline brain anomalies and missense variant supports a causal role for FOXA2 in 20p11.2 deletion syndrome

Authors: Dines, Jennifer N., Liu, Yajuan J., Neufeld‐Kaiser, Whitney, Sawyer, Taylor, Ishak, Gisele E., Tully, Hannah M., Racobaldo, Melissa, Sanchez‐Valle, Amarilis, Disteche, Christine M., Juusola, Jane, Torti, Erin, McWalter, Kirsty, Doherty, Dan, Dipple, Katrina M.

Source: American journal of medical genetics.Part A. 179(9):1783-1790

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100087162241.0x000001&indx=1&recIds=ETOCvdc_100087162241.0x000001

Structural aspects of the inactive X chromosome

Authors: Bonora, Giancarlo, Disteche, Christine M.

Source: Philosophical Transactions: Biological Sciences, 2017 Nov 01. 372(1733), 1-11.

Access URL: https://www.jstor.org/stable/44679435

Allele-specific non-CG DNA methylation marks domains of active chromatin in female mouse brain

Authors: Keown, Christopher L., Berletch, Joel B., Castanon, Rosa, Nery, Joseph R., Disteche, Christine M., Ecker, Joseph R., Mukamel, Eran A.

Source: Proceedings of the National Academy of Sciences of the United States of America, 2017 Apr 01. 114(14), E2882-E2890.

Access URL: https://www.jstor.org/stable/26480709

Evidence of Evolutionary Up-Regulation of the Single Active X Chromosome in Mammals Based on Clc4 Expression Levels in Mus spretus and Mus musculus

Authors: Adler, David A., Rugarli, Elena I., Lingenfelter, Patricia A., Tsuchiya, Karen, Poslinski, Diane, Liggitt, H. Denny, Chapman, Verne M., Elliott, Rosemary W., Ballabio, Andrea, Disteche, Christine M.

Source: Proceedings of the National Academy of Sciences of the United States of America, 1997 Aug . 94(17), 9244-9248.

Access URL: https://www.jstor.org/stable/42589

X-Chromosome Inactivation and Escape from X Inactivation in Mouse

Authors: Ma, Wenxiu, Bonora, Giancarlo, Berletch, Joel B., Deng, Xinxian, Noble, William S., Disteche, Christine M.

Source: Methods in molecular biology. 1861:205-220

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCRN617562569&indx=1&recIds=ETOCRN617562569

Dosage compensation of the sex chromosomes and autosomes

Authors: Disteche, Christine M.

Source: In Seminars in Cell and Developmental Biology August 2016 56:9-18

A single-cell time-lapse of mouse prenatal development from gastrula to birth.

Authors: Qiu, Chengxiang, Martin, Beth K., Welsh, Ian C., Daza, Riza M., Le, Truc-Mai, Huang, Xingfan, Nichols, Eva K., Taylor, Megan L., Fulton, Olivia, O'Day, Diana R., Gomes, Anne Roshella, Ilcisin, Saskia, Srivatsan, Sanjay, Deng, Xinxian, Disteche, Christine M., Noble, William Stafford, Hamazaki, Nobuhiko, Moens, Cecilia B., Kimelman, David, Cao, Junyue

Source: Nature; Feb2024, Vol. 626 Issue 8001, p1084-1093, 10p

X Chromosome

Authors: Disteche, Christine M

Source: Genetics: Q-Z. 2018, p227-230.

Escapees on the X Chromosome

Authors: Disteche, Christine M.

Source: Proceedings of the National Academy of Sciences of the United States of America, 1999 Dec 01. 96(25), 14180-14182.

Access URL: https://www.jstor.org/stable/121370