Evaluating proteome allocation of Saccharomyces cerevisiae phenotypes with resource balance analysis

Authors: Dinh, Hoang V., Maranas, Costas D.

Source: METABOLIC ENGINEERING. 77:242-255

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100190040125.0x000001&indx=1&recIds=ETOCvdc_100190040125.0x000001

Comparative study of two Saccharomyces cerevisiae strains with kinetic models at genome-scale

Authors: Hu, Mengqi, Dinh, Hoang V., Shen, Yihui, Suthers, Patrick F., Foster, Charles J., Call, Catherine M., Ye, Xuanjia, Pratas, Jimmy, Fatma, Zia, Zhao, Huimin, Rabinowitz, Joshua D., Maranas, Costas D.

Source: METABOLIC ENGINEERING. 76:1-17

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100187672262.0x000001&indx=1&recIds=ETOCvdc_100187672262.0x000001

Quantifying the propagation of parametric uncertainty on flux balance analysis

Authors: Dinh, Hoang V., Sarkar, Debolina, Maranas, Costas D.

Source: METABOLIC ENGINEERING. 69:26-39

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100154862666.0x000001&indx=1&recIds=ETOCvdc_100154862666.0x000001

Building kinetic models for metabolic engineering

Authors: Foster, Charles J, Wang, Lin, Dinh, Hoang V, Suthers, Patrick F, Maranas, Costas D

Source: In Current Opinion in Biotechnology February 2021 67:35-41

Preliminary Results in the Investigation of In Vivo Iliac and Coronary Flow Collision, Vortex Formation, and Disorganized Flow Degeneration: Insights from Invasive Cardiology Based on Fluid Mechanics Principles and Practices.

Authors: Nguyen, Thach^1,2, hieu.nguyenmd94@gmail.comthachnguyen2000@yahoo.com, Nguyen, Hieu D.¹, joseph.dinh94@gmail.com, Dinh, Hoang V. K.¹, dhthuytien.md@gmail.com, Dinh, Tien H. T.¹, nguyenquanghienmd@gmail.com, Ngo, Khiem³, luoikiemvang@gmail.com, Truong, Hieu H.⁴, hhieu.truong@gmail.com, Nguyen, Hien Q.¹, triloc27@gmail.com, Loc, Vu Tri^1,2, cucthienle1@gmail.com, Le, Thien¹, leynhivo@gmail.com, Vo, Nhi¹, leptv@hawaii.edu, Le, Trung Q. T.⁵, trungle2304@gmail.com, Tran, Tam⁶, tranquocminhtam@gmail.com, Dang, Chau⁷, drchauminhdang@gmail.com, Le, Vy¹, drmihasmamu@yahoo.com, Ha, Dat Q.⁸, datquangha@gmail.com, Tran, Hadrian⁹, tranhadrian@gmail.com, Kodenchery, Mihas¹, Zuin, Marco¹⁰, zuinml@yahoo.it, Rigatelli, Gianluca¹¹, jackyheart@libero.it, Antunes, Miguel¹², miguelmantunes.md@gmail.com

Source: Fluids; Oct2024, Vol. 9 Issue 10, p222, 20p

Genome-scale metabolic reconstruction of the non-model yeast Issatchenkia orientalis SD108 and its application to organic acids production

Authors: Suthers, Patrick F., Dinh, Hoang V., Fatma, Zia, Shen, Yihui, Chan, Siu Hung Joshua, Rabinowitz, Joshua D., Zhao, Huimin, Maranas, Costas D.

Source: In Metabolic Engineering Communications December 2020 11

Metabolic flux analysis reaching genome wide coverage: lessons learned and future perspectives

Authors: Hendry, John I, Dinh, Hoang V, Foster, Charles, Gopalakrishnan, Saratram, Wang, Lin, Maranas, Costas D

Source: In Current Opinion in Chemical Engineering December 2020 30:17-25

A comprehensive genome-scale model for Rhodosporidium toruloides IFO0880 accounting for functional genomics and phenotypic data

Authors: Dinh, Hoang V., Suthers, Patrick F., Chan, Siu Hung Joshua, Shen, Yihui, Xiao, Tianxia, Deewan, Anshu, Jagtap, Sujit S., Zhao, Huimin, Rao, Christopher V., Rabinowitz, Joshua D., Maranas, Costas D.

Source: In Metabolic Engineering Communications December 2019 9

Mitochondrial ATP generation is more proteome efficient than glycolysis

Authors: Shen, Yihui, Dinh, Hoang V., Cruz, Edward R., Chen, Zihong, Bartman, Caroline R., Xiao, Tianxia, Call, Catherine M., Ryseck, Rolf-Peter, Pratas, Jimmy, Weilandt, Daniel, Baron, Heide, Subramanian, Arjuna, Fatma, Zia, Wu, Zong-Yen, Dwaraknath, Sudharsan, Hendry, John I., Tran, Vinh G., Yang, Lifeng, Yoshikuni, Yasuo, Zhao, Huimin, Maranas, Costas D., Wühr, Martin, Rabinowitz, Joshua D.

Source: Nature Chemical Biology; 20240101, Issue: Preprints p1-10, 10p

Proteome efficiency of bioenergetic pathways

Authors: Shen, Yihui, Dinh, Hoang V., Cruz, Edward, Chen, Zihong, Bartman, Caroline R., Yoshikuni, Yasuo, Zhao, Huimin, Maranas, Costas D., Wühr, Martin H., Rabinowitz, Joshua D.

Source: In Biophysical Journal 8 February 2024 123(3) Supplement 1:248a-248a

Identification of growth-coupled production strains considering protein costs and kinetic variability

Authors: Dinh, Hoang V., King, Zachary A., Palsson, Bernhard O., Feist, Adam M.

Source: In Metabolic Engineering Communications December 2018 7

A Genome-Scale Metabolic Model of Anabaena 33047 to Guide Genetic Modifications to Overproduce Nylon Monomers.

Authors: Hendry, John I., Dinh, Hoang V., Sarkar, Debolina, Wang, Lin, Bandyopadhyay, Anindita, Pakrasi, Himadri B., Maranas, Costas D., Poolman, Mark M. G.

Source: Metabolites (2218-1989); Mar2021, Vol. 11 Issue 3, p168, 1p

Subject Terms: METABOLIC models, ANABAENA, MONOMERS, GENETIC engineering, ELECTRON transport, CYANOBACTERIAL toxins

Genome-scale metabolic reconstruction of the non-model yeast Issatchenkia orientalisSD108 and its application to organic acids production

Authors: Suthers, Patrick F., Dinh, Hoang V., Fatma, Zia, Shen, Yihui, Chan, Siu Hung Joshua, Rabinowitz, Joshua D., Zhao, Huimin, Maranas, Costas D.

Source: Metabolic Engineering Communications; December 2020, Vol. 11 Issue: 1

A comprehensive genome-scale model for Rhodosporidium toruloidesIFO0880 accounting for functional genomics and phenotypic data

Authors: Dinh, Hoang V., Suthers, Patrick F., Chan, Siu Hung Joshua, Shen, Yihui, Xiao, Tianxia, Deewan, Anshu, Jagtap, Sujit S., Zhao, Huimin, Rao, Christopher V., Rabinowitz, Joshua D., Maranas, Costas D.

Source: Metabolic Engineering Communications; December 2019, Vol. 9 Issue: 1