The crystal structure of Grindelia robusta 7,13-copalyl diphosphate synthase reveals active site features controlling catalytic specificity

Authors: Cowie, Anna E. ^{1, ‡}, Pereira, Jose H. ^{2, 3, ‡}, DeGiovanni, Andy ^{2, 3}, McAndrew, Ryan P. ², Palayam, Malathy ¹, Peek, Jedidiah O. ¹, Muchlinski, Andrew J. ¹, Yoshikuni, Yasuo ⁴, Shabek, Nitzan ¹, Adams, Paul D. ^{2, 3, 5}, Zerbe, Philipp ^{1, ∗}

Source: In Journal of Biological Chemistry December 2024 300(12)

Characterization of lignin-degrading enzyme PmdC, which catalyzes a key step in the synthesis of polymer precursor 2-pyrone-4,6-dicarboxylic acid

Authors: Rodrigues, Andria V. ^{1, 2, ∗}, Moriarty, Nigel W. ², Kakumanu, Ramu ^{1, 3}, DeGiovanni, Andy ^{1, 2}, Pereira, Jose Henrique ^{1, 2}, Gin, Jennifer W. ^{1, 3, 4}, Chen, Yan ^{1, 3, 4}, Baidoo, Edward E.K. ^{1, 3}, Petzold, Christopher J. ^{1, 3, 4}, Adams, Paul D. ^{1, 2, 5, ∗}

Source: In Journal of Biological Chemistry October 2024 300(10)

Crystal Structure of DNA Sequence Specificity Subunit of a Type I Restriction-Modification Enzyme and Its Functional Implications

Authors: Kim, Jeong-Sun, DeGiovanni, Andy, Jancarik, Jaru, Adams, Paul D., Yokota, Hisao, Kim, Rosalind, Kim, Sung-Hou

Source: Proceedings of the National Academy of Sciences of the United States of America, 2005 Mar 01. 102(9), 3248-3253.

Access URL: https://www.jstor.org/stable/3374912

Jungle Express is a versatile repressor system for tight transcriptional control

Authors: Ruegg, Thomas, Pereira, Jose, Chen, Joseph, DeGiovanni, Andy, Novichkov, Pavel, Mutalik, Vivek, Tomaleri, Giovani, Singer, Steven, Hillson, Nathan, Simmons, Blake, Adams, Paul, Thelen, Michael

Source: Nature communications. 9(1):1-13

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100179720415.0x000001&indx=1&recIds=ETOCvdc_100179720415.0x000001

Structure of a Three-Domain Sesquiterpene Synthase: A Prospective Target for Advanced Biofuels Production

Authors: McAndrew, Ryan P., Peralta-Yahya, Pamela P., DeGiovanni, Andy, Pereira, Jose H., Hadi, Masood Z., Keasling, Jay D., Adams, Paul D.

Source: In Structure 7 December 2011 19(12):1876-1884

Author Correction: Jungle Express is a versatile repressor system for tight transcriptional control

Authors: Ruegg, Thomas L., Pereira, Jose H., Chen, Joseph C., DeGiovanni, Andy, Novichkov, Pavel, Mutalik, Vivek K., Tomaleri, Giovani P., Singer, Steven W., Hillson, Nathan J., Simmons, Blake A., Adams, Paul D., Thelen, Michael P.

Source: Nature communications. 9(1)

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100129872653.0x000001&indx=1&recIds=ETOCvdc_100129872653.0x000001

A Synthetic Gene Library Yields a Previously Unknown Glycoside Phosphorylase That Degrades and Assembles Poly-β-1,3-GlcNAc, Completing the Suite of β‑Linked GlcNAc Polysaccharides.

Authors: Macdonald, Spencer S., Pereira, Jose H., Liu, Feng, Tegl, Gregor, DeGiovanni, Andy, Wardman, Jacob F., Deutsch, Samuel, Yoshikuni, Yasuo, Adams, Paul D., Withers, Stephen G.

Source: ACS Central Science; 4/27/2022, Vol. 8 Issue 4, p430-440, 11p

Accurate prediction of protein structures and interactions using a three-track neural network.

Authors: Baek, Minkyung¹, DiMaio, Frank, Anishchenko, Ivan, Dauparas, Justas, Ovchinnikov, Sergey², Lee, Gyu Rie, Wang, Jue, Cong, Qian³, Kinch, Lisa N.⁴, Schaeffer, R. Dustin, Millán, Claudia⁵, Park, Hahnbeom, Adams, Carson, Glassman, Caleb R.⁶, DeGiovanni, Andy⁷, Pereira, Jose H., Rodrigues, Andria V., van Dijk, Alberdina A.⁸, Ebrecht, Ana C., Opperman, Diederik J.⁹

Source: Science; 8/20/2021, Vol. 373 Issue 6557, p871-876, 6p, 4 Color Photographs

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Perfusion airlift bioreactor

Crystal structure of the multidrug efflux transporter AcrB at 3.1 Å resolution reveals the N-terminal region with conserved amino acids

Authors: Das, Debanu, Xu, Qian Steven, Lee, Jonas Y., Ankoudinova, Irina, Huang, Candice, Lou, Yun, DeGiovanni, Andy, Kim, Rosalind, Kim, Sung-Hou

Source: In Journal of Structural Biology 2007 158(3):494-502

Structural Genomics of Minimal Organisms and Protein Fold Space.

Authors: Kim, Sung-Hou, Shin, Dong, Liu, Jinyu, Oganesyan, Vaheh, Chen, Shengfeng, Xu, Qian, Kim, Jeong-Sun, Das, Debanu, Schulze-Gahmen, Ursula, Holbrook, Stephen, Holbrook, Elizabeth, Martinez, Bruno, Oganesyan, Natalia, DeGiovanni, Andy, Lou, Yun, Henriquez, Marlene, Huang, Candice, Jancarik, Jaru, Pufan, Ramona, Choi, In-Geol

Source: Journal of Structural & Functional Genomics; Sep2005, Vol. 6 Issue 2/3, p63-70, 8p

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