Gut microbiota genome features associated with brain injury in extremely premature infants

Authors: David Seki, Rasmus Kirkegaard, Jay Osvatic, Bela Hausmann, Joana Séneca, Petra Pjevac, Angelika Berger, Lindsay J Hall, Lukas Wisgrill, David Berry

Source: Gut Microbes, Vol 16, Iss 1 (2024)

Subject Terms: Perinatal white matter injury, Enterobacteriaceae, gut-microbiota-brain axis, extremely premature infants, siderophores, inflammation, Diseases of the digestive system. Gastroenterology, RC799-869

File Description: electronic resource

Relation: https://doaj.org/toc/1949-0976; https://doaj.org/toc/1949-0984

Access URL: https://doaj.org/article/d0d71c0629c24aaa8c4775a93d08a28c

Characteristics of putative keystones in the healthy adult human gut microbiota as determined by correlation network analysis

Authors: Franziska Bauchinger, David Seki, David Berry

Source: Frontiers in Microbiology, Vol 15 (2024)

Subject Terms: Methanobrevibacter smithii, Bilophila wadsworthia, Holdemania filiformis, Agathobaculum butyriciproducens, Ruminococcus lactaris, Veillonella atypica, Microbiology, QR1-502

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fmicb.2024.1454634/full; https://doaj.org/toc/1664-302X

Access URL: https://doaj.org/article/0bbfef8e02bd45cdb8eaf289ad61b447

A metalloprotease secreted by an environmentally acquired gut bacterium hinders Borrelia afzelii colonization in Ixodes ricinus

Authors: Adnan Hodžić, Gorana Veinović, Amer Alić, David Seki, Martin Kunert, Georgi Nikolov, Ratko Sukara, Jovana Šupić, Snežana Tomanović, David Berry

Source: Frontiers in Cellular and Infection Microbiology, Vol 14 (2024)

Subject Terms: Borrelia afzelii, enhancin, gut microbiome, Ixodes ricinus, peritrophic matrix, Microbiology, QR1-502

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fcimb.2024.1476266/full; https://doaj.org/toc/2235-2988

Access URL: https://doaj.org/article/fea4fcbe0e234a37a40f1ec09a62cf8b

Next-generation biomonitoring of the early-life chemical exposome in neonatal and infant development

Authors: Thomas Jamnik, Mira Flasch, Dominik Braun, Yasmin Fareed, Daniel Wasinger, David Seki, David Berry, Angelika Berger, Lukas Wisgrill, Benedikt Warth

Source: Nature Communications, Vol 13, Iss 1, Pp 1-14 (2022)

Subject Terms: Science

File Description: electronic resource

Relation: https://doaj.org/toc/2041-1723

Access URL: https://doaj.org/article/a1dcc0a7f62b4685bc54533a14706f60

Individuality of the Extremely Premature Infant Gut Microbiota Is Driven by Ecological Drift

Authors: David Seki, Clemens Schauberger, Bela Hausmann, Angelika Berger, Lukas Wisgrill, David Berry

Source: mSystems, Vol 7, Iss 3 (2022)

Subject Terms: deterministic, microbiota assembly, premature infants, stochastic, Microbiology, QR1-502

File Description: electronic resource

Relation: https://doaj.org/toc/2379-5077

Access URL: https://doaj.org/article/d5edf06ba9d44ad4bd08abee1e2b8ac1

Ecological Processes Shaping Microbiomes of Extremely Low Birthweight Infants

Authors: Christos Zioutis, David Seki, Franziska Bauchinger, Craig Herbold, Angelika Berger, Lukas Wisgrill, David Berry

Source: Frontiers in Microbiology, Vol 13 (2022)

Subject Terms: neonatal microbiome, ecological processes, community states, Markov model, microbial community assembly, Microbiology, QR1-502

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fmicb.2022.812136/full; https://doaj.org/toc/1664-302X

Access URL: https://doaj.org/article/8daae2892f204e98be36facece4583c1

Characteristics of putative keystones in the healthy adult human gut microbiota as determined by correlation network analysis

Authors: Franziska Bauchinger (Department of Microbiology and Ecosystem Science, Centre for Microbiology and Environmental Systems Science, University of Vienna), David Seki (Department of Microbiology and Ecosystem Science, Centre for Microbiology and Environmental Systems Science, University of Vienna), David Berry (Department of Microbiology and Ecosystem Science, Centre for Microbiology and Environmental Systems Science, University of Vienna)

Availability: http://data.europeana.eu/aggregation/europeana/1300/https___phaidra_univie_ac_at_o_2106445

Gut microbiota genome features associated with brain injury in extremely premature infants

Authors: David Seki (Department of Microbiology and Ecosystem Science, Centre for Microbiology and Environmental Systems Science, University of Vienna), Rasmus Kirkegaard (Department of Microbiology and Ecosystem Science, Centre for Microbiology and Environmental Systems Science, University of Vienna), Jay Osvatic (Joint Microbiome Facility of the Medical University of Vienna and the University of Vienna), Bela Hausmann (Joint Microbiome Facility of the Medical University of Vienna and the University of Vienna), Joana Séneca (Department of Microbiology and Ecosystem Science, Centre for Microbiology and Environmental Systems Science, University of Vienna), Petra Pjevac (Department of Microbiology and Ecosystem Science, Centre for Microbiology and Environmental Systems Science, University of Vienna), Angelika Berger (Department of Pediatrics and Adolescent Medicine, Division of Neonatology, Pediatric Intensive Care and Neuropediatrics, Comprehensive Center for Pediatrics, Medical University of Vienna), Lindsay J Hall (Intestinal Microbiome, School of Life Sciences, ZIEL - Institute for Food & Health, Technical University of Munich), Lukas Wisgrill (Department of Pediatrics and Adolescent Medicine, Division of Neonatology, Pediatric Intensive Care and Neuropediatrics, Comprehensive Center for Pediatrics, Medical University of Vienna), David Berry (Department of Microbiology and Ecosystem Science, Centre for Microbiology and Environmental Systems Science, University of Vienna)

Availability: http://data.europeana.eu/aggregation/europeana/1300/https___phaidra_univie_ac_at_o_2101346

A metalloprotease secreted by an environmentally acquired gut bacterium hinders Borrelia afzelii colonization in Ixodes ricinus

Authors: Adnan Hodžić (Department of Microbiology and Ecosystem Science, Centre for Microbiology and Environmental Systems Science, University of Vienna), Gorana Veinović (Institute for Medical Research, National Institute of Republic of Serbia, University of Belgrade), Amer Alić (Department of Clinical Sciences of Veterinary Medicine, Faculty of Veterinary Medicine, University of Sarajevo), David Seki (Department of Microbiology and Ecosystem Science, Centre for Microbiology and Environmental Systems Science, University of Vienna), Martin Kunert (Department of Microbiology and Ecosystem Science, Centre for Microbiology and Environmental Systems Science, University of Vienna), Georgi Nikolov (Department of Microbiology and Ecosystem Science, Centre for Microbiology and Environmental Systems Science, University of Vienna), Ratko Sukara (Institute for Medical Research, National Institute of Republic of Serbia, University of Belgrade), Jovana Šupić (Department of Clinical Sciences of Veterinary Medicine, Faculty of Veterinary Medicine, University of Sarajevo), Snežana Tomanović (Institute for Medical Research, National Institute of Republic of Serbia, University of Belgrade), David Berry (Department of Microbiology and Ecosystem Science, Centre for Microbiology and Environmental Systems Science, University of Vienna)

Availability: http://data.europeana.eu/aggregation/europeana/1300/https___phaidra_univie_ac_at_o_2099233

Neuroactive metabolites and bile acids are altered in extremely premature infants with brain injury

Authors: Manuel Pristner (Department of Food Chemistry and Toxicology, Faculty of Chemistry, University of Vienna), Daniel Wasinger (Department of Food Chemistry and Toxicology, Faculty of Chemistry, University of Vienna), David Seki (Department of Microbiology and Ecosystem Science, Centre for Microbiology and Environmental Systems Science, University of Vienna), Katrin Klebermaß-Schrehof (Department of Pediatrics and Adolescent Medicine, Division of Neonatology, Pediatric Intensive Care and Neuropediatrics, Comprehensive Center for Pediatrics, Medical University of Vienna), Angelika Berger (Department of Pediatrics and Adolescent Medicine, Division of Neonatology, Pediatric Intensive Care and Neuropediatrics, Comprehensive Center for Pediatrics, Medical University of Vienna), David Berry (Department of Microbiology and Ecosystem Science, Centre for Microbiology and Environmental Systems Science, University of Vienna), Lukas Wisgrill (Department of Pediatrics and Adolescent Medicine, Division of Neonatology, Pediatric Intensive Care and Neuropediatrics, Comprehensive Center for Pediatrics, Medical University of Vienna), Benedikt Warth (Department of Food Chemistry and Toxicology, Faculty of Chemistry, University of Vienna)

Availability: http://data.europeana.eu/aggregation/europeana/1300/https___phaidra_univie_ac_at_o_2085411

Gold‐FISH enables targeted NanoSIMS analysis of plant‐associated bacteria

Authors: Hannes Schmidt (Centre for Microbiology and Environmental Systems Science, University of Vienna), Stefan Gorka (Centre for Microbiology and Environmental Systems Science, University of Vienna), David Seki (Centre for Microbiology and Environmental Systems Science, University of Vienna), Arno Schintlmeister (Centre for Microbiology and Environmental Systems Science, University of Vienna), Dagmar Woebken (Centre for Microbiology and Environmental Systems Science, University of Vienna)

Availability: http://data.europeana.eu/aggregation/europeana/1300/https___phaidra_univie_ac_at_o_2037573

Individuality of the Extremely Premature Infant Gut Microbiota Is Driven by Ecological Drift

Authors: David Seki (Department of Microbiology and Ecosystem Science, Centre for Microbiology and Environmental Systems Science, University of Vienna), Clemens Schauberger (Hadal & Nordcee, Department of Biology, University of Southern Denmark), Bela Hausmann (Joint Microbiome Facility of the Medical University of Vienna and the University of Vienna), Angelika Berger (Department of Pediatrics and Adolescent Medicine, Division of Neonatology, Pediatric Intensive Care and Neuropediatrics, Comprehensive Center for Pediatrics, Medical University of Vienna), Lukas Wisgrill (Department of Pediatrics and Adolescent Medicine, Division of Neonatology, Pediatric Intensive Care and Neuropediatrics, Comprehensive Center for Pediatrics, Medical University of Vienna), David Berry (Department of Microbiology and Ecosystem Science, Centre for Microbiology and Environmental Systems Science, University of Vienna)

Availability: http://data.europeana.eu/aggregation/europeana/1300/https___phaidra_univie_ac_at_o_1679370

Ecological Processes Shaping Microbiomes of Extremely Low Birthweight Infants

Authors: Christos Zioutis (Department of Microbiology and Ecosystem Science, Centre for Microbiology and Environmental Systems Science, University of Vienna), David Seki (Department of Microbiology and Ecosystem Science, Centre for Microbiology and Environmental Systems Science, University of Vienna), Franziska Bauchinger (Department of Microbiology and Ecosystem Science, Centre for Microbiology and Environmental Systems Science, University of Vienna), Craig Herbold (Department of Microbiology and Ecosystem Science, Centre for Microbiology and Environmental Systems Science, University of Vienna), Angelika Berger (Division of Neonatology, Department of Pediatrics and Adolescent Medicine, Pediatric Intensive Care and Neuropediatrics, Comprehensive Center for Pediatrics, Medical University of Vienna), Lukas Wisgrill (Division of Neonatology, Department of Pediatrics and Adolescent Medicine, Pediatric Intensive Care and Neuropediatrics, Comprehensive Center for Pediatrics, Medical University of Vienna), David Berry (Department of Microbiology and Ecosystem Science, Centre for Microbiology and Environmental Systems Science, University of Vienna)

Availability: http://data.europeana.eu/aggregation/europeana/1300/https___phaidra_univie_ac_at_o_1668266

Next-generation biomonitoring of the early-life chemical exposome in neonatal and infant development

Authors: Thomas Jamnik (Department of Food Chemistry and Toxicology, Faculty of Chemistry, University of Vienna), Mira Flasch (Department of Food Chemistry and Toxicology, Faculty of Chemistry, University of Vienna), Dominik Braun (Department of Food Chemistry and Toxicology, Faculty of Chemistry, University of Vienna), Yasmin Fareed (Department of Food Chemistry and Toxicology, Faculty of Chemistry, University of Vienna), Daniel Wasinger (Department of Food Chemistry and Toxicology, Faculty of Chemistry, University of Vienna), David Seki (Department of Microbiology and Ecosystem Science, Centre for Microbiology and Environmental Systems Science, University of Vienna), David Berry (Department of Microbiology and Ecosystem Science, Centre for Microbiology and Environmental Systems Science, University of Vienna), Angelika Berger (Medical University of Vienna, Division of Neonatology, Pediatric Intensive Care and Neuropediatrics, Comprehensive Center for Pediatrics), Lukas Wisgrill (Medical University of Vienna, Division of Neonatology, Pediatric Intensive Care and Neuropediatrics, Comprehensive Center for Pediatrics), Benedikt Warth (Department of Food Chemistry and Toxicology, Faculty of Chemistry, University of Vienna)

Availability: http://data.europeana.eu/aggregation/europeana/1300/https___phaidra_univie_ac_at_o_1666690

A Mixed-Lipid Emulsion Containing Fish Oil for the Parenteral Nutrition of Preterm Infants: No Impact on Visual Neuronal Conduction

Authors: Christoph Binder (Division of Neonatology, Intensive Care and Neuropediatrics, Comprehensive Center for Pediatrics, Department of Pediatrics and Adolescent Medicine, Medical University of Vienna), Hannah Schned (Division of Neonatology, Intensive Care and Neuropediatrics, Comprehensive Center for Pediatrics, Department of Pediatrics and Adolescent Medicine, Medical University of Vienna), Nicholas Longford (Neonatal Data Analysis Unit, Department of Medicine, School of Public Health, Imperial College London), Eva Schwindt (Division of Neonatology, Intensive Care and Neuropediatrics, Comprehensive Center for Pediatrics, Department of Pediatrics and Adolescent Medicine, Medical University of Vienna), Margarita Thanhaeuser (Division of Neonatology, Intensive Care and Neuropediatrics, Comprehensive Center for Pediatrics, Department of Pediatrics and Adolescent Medicine, Medical University of Vienna), Alexandra Thajer (Division of Neonatology, Intensive Care and Neuropediatrics, Comprehensive Center for Pediatrics, Department of Pediatrics and Adolescent Medicine, Medical University of Vienna), Katharina Goeral (Division of Neonatology, Intensive Care and Neuropediatrics, Comprehensive Center for Pediatrics, Department of Pediatrics and Adolescent Medicine, Medical University of Vienna), Matteo Tardelli (Division of Gastroenterology and Hepatology, Department of Medicine, Weill Cornell Medical College), David Berry (Department of Microbiology and Ecosystem Science, Centre for Microbiology and Environmental Systems Science, University of Vienna), Lukas Wisgrill (Division of Neonatology, Intensive Care and Neuropediatrics, Comprehensive Center for Pediatrics, Department of Pediatrics and Adolescent Medicine, Medical University of Vienna), David Seki (Department of Microbiology and Ecosystem Science, Centre for Microbiology and Environmental Systems Science, University of Vienna), Angelika Berger (Division of Neonatology, Intensive Care and Neuropediatrics, Comprehensive Center for Pediatrics, Department of Pediatrics and Adolescent Medicine, Medical University of Vienna), Katrin Klebermass-Schrehof (Division of Neonatology, Intensive Care and Neuropediatrics, Comprehensive Center for Pediatrics, Department of Pediatrics and Adolescent Medicine, Medical University of Vienna), Andreas Repa (Division of Neonatology, Intensive Care and Neuropediatrics, Comprehensive Center for Pediatrics, Department of Pediatrics and Adolescent Medicine, Medical University of Vienna), Vito Giordano (Division of Neonatology, Intensive Care and Neuropediatrics, Comprehensive Center for Pediatrics, Department of Pediatrics and Adolescent Medicine, Medical University of Vienna)

Availability: http://data.europeana.eu/aggregation/europeana/1300/https___phaidra_univie_ac_at_o_1597264

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