Deep Learning-Enabled Classification of HER2 Score in Breast Cancer Using Pyramid Sampling

Authors: Selcuk, Sahan Yoruc, Yang, Xilin, Bai, Bijie, Zhang, Yijie, Li, Yuzhu, Aydin, Musa, Unal, Aras Firat, Gomatam, Aditya, Guo, Zhen, Angus, Darrow Morgan, Kolodney, Goren, Atlan, Karine, Haran, Tal Keidar, Pillar, Nir, Ozcan, Aydogan

Source: 2024 Conference on Lasers and Electro-Optics (CLEO) Lasers and Electro-Optics (CLEO), 2024 Conference on. :1-2 May, 2024

Relation: 2024 Conference on Lasers and Electro-Optics (CLEO)

Automated HER2 Scoring in Breast Cancer Images Using Deep Learning and Pyramid Sampling

Authors: Selcuk, Sahan Yoruc, Yang, Xilin, Bai, Bijie, Zhang, Yijie, Li, Yuzhu, Aydin, Musa, Unal, Aras Firat, Gomatam, Aditya, Guo, Zhen, Angus, Darrow Morgan, Kolodney, Goren, Atlan, Karine, Haran, Tal Keidar, Pillar, Nir, Ozcan, Aydogan

Source: BME Frontiers (2024)

Subject Terms: Electrical Engineering and Systems Science - Image and Video Processing, Computer Science - Computer Vision and Pattern Recognition, Computer Science - Machine Learning, Physics - Medical Physics

Access URL: http://arxiv.org/abs/2404.00837

Deep Learning-based Virtual Immunohistochemical HER2 staining of Label-Free Breast Tissue

Authors: Bai, Bijie, Wang, Hongda, Li, Yuzhu, de Haan, Kevin, Colonnese, Francesco, Wan, Yujie, Zuo, Jingyi, Doan, Ngan B., Zhang, Xiaoran, Zhang, Yijie, Li, Jingxi, Dong, Wenjie, Darrow, Morgan Angus, Kamangar, Elham, Lee, Han Sung, Rivenson, Yair, Ozcan, Aydogan

Source: 2022 Conference on Lasers and Electro-Optics (CLEO) Lasers and Electro-Optics (CLEO), 2022 Conference on. :1-2 May, 2022

Relation: 2022 Conference on Lasers and Electro-Optics (CLEO)

Label-free virtual HER2 immunohistochemical staining of breast tissue using deep learning

Authors: Bai, Bijie, Wang, Hongda, Li, Yuzhu, de Haan, Kevin, Colonnese, Francesco, Wan, Yujie, Zuo, Jingyi, Doan, Ngan B., Zhang, Xiaoran, Zhang, Yijie, Li, Jingxi, Dong, Wenjie, Darrow, Morgan Angus, Kamangar, Elham, Lee, Han Sung, Rivenson, Yair, Ozcan, Aydogan

Source: BME Frontiers (2022)

Subject Terms: Quantitative Biology - Quantitative Methods, Computer Science - Machine Learning, Electrical Engineering and Systems Science - Image and Video Processing, Physics - Medical Physics

Access URL: http://arxiv.org/abs/2112.05240

Synchronous Undetected HPV+ Cancer in a HPV— Tongue Cancer Patient

Authors: Ershadifar, Soroush, Ustrell, Sarah, Darrow, Morgan Angus, Birkeland, Andrew

Source: Ear Nose and Throat Journal. 102(9):8S-11S

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCRN632538751&indx=1&recIds=ETOCRN632538751

Analyzing Anatomic Pathology On-Call Summaries to Improve Resident Education

Authors: Liu, Ying, Payne-Uprichard, Danielle, Gui, Dorina, Darrow, Morgan A., Rashidi, Hooman H., Matsukuma, Karen

Source: Archives of pathology & laboratory medicine. 146(1):112-116

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCRN631343349&indx=1&recIds=ETOCRN631343349

Machine learning for rhabdomyosarcoma histopathology

Authors: Frankel, Arthur O., Lathara, Melvin, Shaw, Celine Y., Wogmon, Owen, Jackson, Jacob M., Clark, Mattie M., Eshraghi, Navah, Keenen, Stephanie E., Woods, Andrew D., Purohit, Reshma, Ishi, Yukitomo, Moran, Nirupama, Eguchi, Mariko, Ahmed, Farhat Ul Ain, Khan, Sara, Ioannou, Maria, Perivoliotis, Konstantinos, Li, Pin, Zhou, Huixia, Alkhaledi, Ahmad, Davis, Elizabeth J., Galipeau, Danielle, Randall, R.L., Wozniak, Agnieszka, Schoffski, Patrick, Lee, Che-Jui, Huang, Paul H., Jones, Robin L., Rubin, Brian P., Darrow, Morgan, Srinivasa, Ganapati, Rudzinski, Erin R., Chen, Sonja, Berlow, Noah E., Keller, Charles

Source: In Modern Pathology September 2022 35(9):1193-1203

A 70-Year-Old Woman With Refractory Hypoxemia

Authors: Manoukian, Martin A.C., Corbett, Rebecca L., Mumma, Bryn E., Darrow, Morgan A., Harper, Richart W.

Source: Chest. 160(3):e265-e268

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100138259248.0x000001&indx=1&recIds=ETOCvdc_100138259248.0x000001

Surgical and oncologic outcomes following arterial resection and reconstruction for advanced solid tumors

Authors: Cruz, Sylvia M., Basmaci, Ugur N., Bateni, Cyrus P., Darrow, Morgan A., Judge, Sean J., Monjazeb, Arta M., Thorpe, Steven W., Humphries, Misty D., Canter, Robert J.

Source: Journal of surgical oncology. 124(8):1251-1260

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100134623480.0x000001&indx=1&recIds=ETOCvdc_100134623480.0x000001

Radiotherapy is Associated With Improved Survival in Patients With Synovial Sarcoma Undergoing Surgery: A National Cancer Database Analysis

Authors: Gingrich, Alicia A., Marrufo, Angelica S., Liu, Yu, Li, Chin-Shang, Darrow, Morgan A., Monjazeb, Arta M., Thorpe, Steven W., Canter, Robert J.

Source: In Journal of Surgical Research November 2020 255:378-387

AI-Based Automated Lipomatous Tumor Segmentation in MR Images: Ensemble Solution to Heterogeneous Data.

Authors: Liu, Chih-Chieh¹, Abdelhafez, Yasser G.^2,3, Yap, S. Paran², Acquafredda, Francesco⁴, Schirò, Silvia⁵, Wong, Andrew L.², Sarohia, Dani², Bateni, Cyrus², Darrow, Morgan A.⁶, Guindani, Michele⁷, Lee, Sonia⁸, Zhang, Michelle⁹, Moawad, Ahmed W.^10,11, Ng, Quinn Kwan-Tai², Shere, Layla¹⁰, Elsayes, Khaled M.¹⁰, Maroldi, Roberto⁴, Link, Thomas M.¹², Nardo, Lorenzo², Qi, Jinyi¹, qi@ucdavis.edu

Source: Journal of Digital Imaging; Jun2023, Vol. 36 Issue 3, p1049-1059, 11p, 3 Diagrams, 1 Chart, 4 Graphs

Qualitative evaluation of MRI features of lipoma and atypical lipomatous tumor: results from a multicenter study

Authors: Nardo, Lorenzo, Abdelhafez, Yasser G, Acquafredda, Francesco, Schirò, Silvia, Wong, Andrew L., Sarohia, Dani, Maroldi, Roberto, Darrow, Morgan A., Guindani, Michele, Lee, Sonia, Zhang, Michelle, Moawad, Ahmed W., Elsayes, Khaled M., Badawi, Ramsey D., Link, Thomas M.

Source: Skeletal radiology. 49(6):1005-1014

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100167900368.0x000001&indx=1&recIds=ETOCvdc_100167900368.0x000001

Alterations in cancer stem-cell marker CD44 expression predict oncologic outcome in soft-tissue sarcomas

Authors: Henderson, Timothy, Chen, Mingyi, Darrow, Morgan A., Li, Chin-Shang, Chiu, Chi-Lu, Monjazeb, Arta M., Murphy, William J., Canter, Robert J.

Source: In Journal of Surgical Research March 2018 223:207-214

Impact of pre‐analytical variables on deep learning accuracy in histopathology

Authors: Jones, Andrew D, Graff, John Paul, Darrow, Morgan, Borowsky, Alexander, Olson, Kristin A, Gandour‐Edwards, Regina, Datta Mitra, Ananya, Wei, Dongguang, Gao, Guofeng, Durbin‐Johnson, Blythe, Rashidi, Hooman H

Source: Histopathology. 75(1):39-53

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100084334856.0x000001&indx=1&recIds=ETOCvdc_100084334856.0x000001

Morbidity, mortality and temporal trends in the surgical management of retroperitoneal sarcoma: An ACS‐NSQIP follow up analysis

Authors: Judge, Sean J., Lata‐Arias, Kathleen, Yanagisawa, Mio, Darrow, Morgan A., Monjazeb, Arta M., Kirane, Amanda R., Bold, Richard J., Canter, Robert J., Canter, Daniel J.

Source: Journal of surgical oncology. 120(4):753-760

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100087309292.0x000001&indx=1&recIds=ETOCvdc_100087309292.0x000001

Characterization of natural killer and cytotoxic T‐cell immune infiltrates in pancreatic ductal adenocarcinoma.

Authors: Persky, Julia, Cruz, Sylvia M., Darrow, Morgan A., Judge, Sean J., Li, Yueju, Bold, Richard J., Karnezis, Anthony N., Matsukuma, Karen E., Qi, Lihong, Canter, Robert J.

Source: Journal of Surgical Oncology; Apr2024, Vol. 129 Issue 5, p885-892, 8p

Use of Pathology Data to Improve High-Value Treatment of Cervical Neoplasia

Authors: Ducatman, Barbara S. ^*, Hashmi, Mahreen, Darrow, Morgan, Flanagan, Melina B., Courtney, Pamela, Ducatman, Alan M.

Source: In Academic Pathology January-December 2016 3

Low-Dose Sorafenib Promotes Cancer Stem Cell Expansion and Accelerated Tumor Progression in Soft Tissue Sarcomas.

Authors: Cruz, Sylvia M., Iranpur, Khurshid R., Judge, Sean J., Ames, Erik, Sturgill, Ian R., Farley, Lauren E., Darrow, Morgan A., Crowley, Jiwon Sarah, Monjazeb, Arta M., Murphy, William J., Canter, Robert J.

Source: International Journal of Molecular Sciences; Mar2024, Vol. 25 Issue 6, p3351, 14p

Subject Terms: CANCER stem cells, SOFT tissue tumors, SARCOMA, SORAFENIB, ALDEHYDE dehydrogenase, PROTEIN-tyrosine kinase inhibitors, CELL lines

Middle-aged Woman With Atypical Upper Eyelid Retraction

Authors: Homer, Natalie A., Darrow, Morgan

Source: JAMA ophthalmology. 140(9):902-903

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCRN633487387&indx=1&recIds=ETOCRN633487387

Tonsillar Kaposi sarcoma in a renal transplant patient.

Authors: Howard, John H.¹ (AUTHOR), Darrow, Morgan² (AUTHOR), Chen, Ling‐Xin¹ (AUTHOR), Alnimri, Muna¹ (AUTHOR), Jen, Kuang‐Yu² (AUTHOR) kyjen@ucdavis.edu

Source: Transplant Infectious Disease. Oct2020, Vol. 22 Issue 5, p1-4. 4p.

Subject Terms: *KAPOSI'S sarcoma, *KIDNEY transplantation, *AIDS, *TONSILLITIS, *ORAL mucosa, *IMMUNOSUPPRESSIVE agents