Editorial: Omics in seed development: challenges and opportunities for improving of seed quality and yield in model and crop plants

Authors: Changye Yang, Zhaorong Hu, Raju Datla, Daoquan Xiang

Source: Frontiers in Plant Science, Vol 16 (2025)

Subject Terms: seed development, omics, genomics, transcriptomics, proteomics, metabolomics, Plant culture, SB1-1110

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fpls.2025.1568039/full; https://doaj.org/toc/1664-462X

Access URL: https://doaj.org/article/62da1c09dc354e0cbf929dbf5a6ab8db

Haploid induction: an overview of parental factor manipulation during seed formation

Authors: Jingpu Song, Raju Datla, Jitao Zou, Daoquan Xiang

Source: Frontiers in Plant Science, Vol 15 (2024)

Subject Terms: haploid induction, plant breeding, seed development, maternal factors, paternal factors, Plant culture, SB1-1110

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fpls.2024.1439350/full; https://doaj.org/toc/1664-462X

Access URL: https://doaj.org/article/9ed8c92f33be4f3ebf572c51d24b0ce1

Asymmetric gene expression in grain development of reciprocal crosses between tetraploid and hexaploid wheats

Authors: Zhen Jia, Peng Gao, Feifan Yin, Teagen D. Quilichini, Huajin Sheng, Jingpu Song, Hui Yang, Jie Gao, Ting Chen, Bo Yang, Leon V. Kochian, Jitao Zou, Nii Patterson, Qingyong Yang, C. Stewart Gillmor, Raju Datla, Qiang Li, Daoquan Xiang

Source: Communications Biology, Vol 5, Iss 1, Pp 1-15 (2022)

Subject Terms: Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://doaj.org/toc/2399-3642

Access URL: https://doaj.org/article/e73b4279444d4c0790e2d0d11ec09e96

Clustered regularly interspaced short palindromic repeats/CRISPR-associated protein 9-generated diallelic mutants reveal Arabidopsis actin-related protein 2 function in the trafficking of syntaxin PEN1

Authors: Peng Gao, Li Qin, Hanh Nguyen, Huajin Sheng, Teagen D. Quilichini, Daoquan Xiang, Leon V. Kochian, Yangdou Wei, Raju Datla

Source: Frontiers in Plant Science, Vol 13 (2022)

Subject Terms: CRISPR/Cas9, actin-related protein, diallelic mutants, somatic mutations, plant pathogen interactions, Plant culture, SB1-1110

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fpls.2022.934002/full; https://doaj.org/toc/1664-462X

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CRISPR/Cas9 gene editing in legume crops: Opportunities and challenges

Authors: Pankaj Bhowmik, David Konkin, Patricia Polowick, Connor Lorne Hodgins, Maya Subedi, Daoquan Xiang, Bianyun Yu, Nii Patterson, Nandhakishore Rajagopalan, Vivijan Babic, Dae‐Kyun Ro, Bunyamin Tar'an, Manjula Bandara, Stuart J. Smyth, Yuhai Cui, Sateesh Kagale

Source: Legume Science, Vol 3, Iss 3, Pp n/a-n/a (2021)

Subject Terms: CRISPR/Cas9, gene editing, gRNA, legumes, regeneration of plants, tissue culture, Plant culture, SB1-1110

File Description: electronic resource

Relation: https://doaj.org/toc/2639-6181

Access URL: https://doaj.org/article/f4c2bc2405bb4f4f9e305938591d8d9c

Spatiotemporal Transcriptomic Atlas of Developing Embryos and Vegetative Tissues in Flax

Authors: Peng Gao, Shuqing Qiu, Xingliang Ma, Isobel A. P. Parkin, Daoquan Xiang, Raju Datla

Source: Plants, Vol 11, Iss 15, p 2031 (2022)

Subject Terms: flax, transcriptome, development, embryogenesis, spatiotemporal landscape, Botany, QK1-989

File Description: electronic resource

Relation: https://www.mdpi.com/2223-7747/11/15/2031; https://doaj.org/toc/2223-7747

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The Seed Coat’s Impact on Crop Performance in Pea (Pisum sativum L.)

Authors: Teagen D. Quilichini, Peng Gao, Bianyun Yu, Dengjin Bing, Raju Datla, Pierre Fobert, Daoquan Xiang

Source: Plants, Vol 11, Iss 15, p 2056 (2022)

Subject Terms: seed development, embryogenesis, embryo, seed coat, legume, nutrition, Botany, QK1-989

File Description: electronic resource

Relation: https://www.mdpi.com/2223-7747/11/15/2056; https://doaj.org/toc/2223-7747

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Integrative Modeling of Gene Expression and Metabolic Networks of Arabidopsis Embryos for Identification of Seed Oil Causal Genes

Authors: Mathieu Cloutier, Daoquan Xiang, Peng Gao, Leon V. Kochian, Jitao Zou, Raju Datla, Edwin Wang

Source: Frontiers in Plant Science, Vol 12 (2021)

Subject Terms: fatty acids, plant embryo, dynamic modeling, gene expression, metabolic networks, Plant culture, SB1-1110

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fpls.2021.642938/full; https://doaj.org/toc/1664-462X

Access URL: https://doaj.org/article/fc748d6e55484552805236b46f460d06

Developmental and genomic architecture of plant embryogenesis: from model plant to crops

Authors: Alma Armenta-Medina, C. Stewart Gillmor, Peng Gao, Javier Mora-Macias, Leon V. Kochian, Daoquan Xiang, Raju Datla

Source: Plant Communications, Vol 2, Iss 1, Pp 100136- (2021)

Subject Terms: embryogenesis, embryo patterning, zygote genome activation, transcription factors, genomics, transcriptomics, Botany, QK1-989

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S2590346220301796; https://doaj.org/toc/2590-3462

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Annotating and quantifying pri-miRNA transcripts using RNA-Seq data of wild type and serrate-1 globular stage embryos of Arabidopsis thaliana

Authors: Daniel Lepe-Soltero, Alma Armenta-Medina, Daoquan Xiang, Raju Datla, C. Stewart Gillmor, Cei Abreu-Goodger

Source: Data in Brief, Vol 15, Iss , Pp 642-647 (2017)

Subject Terms: Computer applications to medicine. Medical informatics, R858-859.7, Science (General), Q1-390

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S235234091730536X; https://doaj.org/toc/2352-3409

Access URL: https://doaj.org/article/44b929af9cad4de58d12147b67963319

Molecular identification and functional characterization of a cyanogenic glucosyltransferase from flax (Linum unsitatissimum).

Authors: Michael Kazachkov, Qiang Li, Wenyun Shen, Liping Wang, Peng Gao, Daoquan Xiang, Raju Datla, Jitao Zou

Source: PLoS ONE, Vol 15, Iss 2, p e0227840 (2020)

Subject Terms: Medicine, Science

File Description: electronic resource

Relation: https://doaj.org/toc/1932-6203

Access URL: https://doaj.org/article/0c605c929bf04b279ba0407e7866a607

An activated form of UFO alters leaf development and produces ectopic floral and inflorescence meristems.

Authors: Eddy Risseeuw, Prakash Venglat, Daoquan Xiang, Kristina Komendant, Tim Daskalchuk, Vivijan Babic, William Crosby, Raju Datla

Source: PLoS ONE, Vol 8, Iss 12, p e83807 (2013)

Subject Terms: Medicine, Science

File Description: electronic resource

Relation: http://europepmc.org/articles/PMC3871548?pdf=render; https://doaj.org/toc/1932-6203

Access URL: https://doaj.org/article/ccbc26dbc5eb4b2baa0e39532d1037e3

Copy number variation of TdDof controls solid-stemmed architecture in wheat.

Authors: Nilsen, Kirby T., Walkowiak, Sean, Daoquan Xiang, Peng Gao, Quilichini, Teagen D., Willick, Ian R., Byrns, Brook, N'Diaye, Amidou, Ens, Jennifer, Wiebe, Krystalee, Ruan, Yuefeng, Cuthbert, Richard D., Craze, Melanie, Wallington, Emma J., Simmonds, James, Uauy, Cristobal, Datla, Raju, Pozniak, Curtis J.

Source: Proceedings of the National Academy of Sciences of the United States of America; 11/17/2020, Vol. 117 Issue 46, p28708-28718, 11p

Subject Terms: WHEAT, EMMER wheat, APOPTOSIS

Gene expression analysis of flax seed development.

Authors: Venglat, Prakash¹, Daoquan Xiang¹, Shuqing Qiu¹, Stone, Sandra L.¹, Chabane Tibiche², Cram, Dustin¹, Alting-Mees, Michelle¹, Nowak, Jacek¹, Cloutier, Sylvie³, Deyholos, Michael⁴, Bekkaoui, Faouzi¹, Sharpe, Andrew¹, Edwin Wang², Rowland, Gordon⁵, Selvaraj, Gopalan¹, Datla, Raju¹ Raju.Datla@nrc-cnrc.gc.ca

Source: BMC Plant Biology. 2011, Vol. 11 Issue 1, p74-88. 15p.

Subject Terms: *GENE expression, *FLAXSEED, *OMEGA-3 fatty acids, *PLANT embryology, *PLANT genomes, *GENOMICS

PolA2 is required for embryo development in Arabidopsis.

Authors: Hui Yang¹, Daoquan Xiang¹, Venglat, Sathya Prakash¹, Yongguo Cao¹, Wang, Edwin^1,2, Selvaraj, Gopalan¹, Datla, Raju¹ raju.datla@nrc-cnrc.gc.ca

Source: Botany. Jun2009, Vol. 87 Issue 6, p626-634. 8p. 1 Color Photograph, 1 Black and White Photograph, 1 Diagram, 1 Chart, 1 Graph.

Subject Terms: *ARABIDOPSIS, *DNA replication, *DNA polymerases, *PLANT embryology, *PLANTS, *MOLECULAR genetics

Development of a Brassica seed cDNA microarray.

Authors: Daoquan Xiang¹, Datla, Raju¹, Fengling Li^1,2, Cutler, Adrian¹, Malik, Meghna R.¹, Krochko, Joan E.¹, Sharma, Nirmala¹, Fobert, Pierre¹, Georges, Fawzy¹, Selvaraj, Gopalan¹, Tsang, Ed¹, Klassen, Darrin¹, Chushin Koh¹, Deneault, Jean-Sebastien³, Nantel, Andre³, Nowak, Jacek¹, Keller, Wilf¹, Bekkaoui, Faouzi¹ Faouzi.Bekkaoui@nrc-cnrc.gc.ca

Source: Genome. Mar2008, Vol. 51 Issue 3, p236-242. 6p. 1 Diagram, 1 Chart, 1 Graph.

Subject Terms: *BRASSICA, *PLANT genetics, *DNA microarrays, *GENE expression, *COMMERCIAL product testing

Transcriptional Landscape of Polyploid Wheats and Their Diploid Ancestors during Embryogenesis and Grain Development.

Authors: 12, Daoquan Xiang¹ (AUTHOR), 1, Teagen D. Quilichini¹ (AUTHOR), Liu, Ziying² (AUTHOR), Gao, Peng¹ (AUTHOR) daoquan.xiang@nrc-cnrc.gc.ca, Pan, Youlian² (AUTHOR), Li, Qiang³ (AUTHOR), Nilsen, Kirby T.⁴ (AUTHOR), Venglat, Prakash⁵ (AUTHOR), Esteban, Eddi⁶ (AUTHOR), Pasha, Asher⁶ (AUTHOR), Wang, Yejun⁷ (AUTHOR), Wen, Rui¹ (AUTHOR), Zhang, Zhongjuan⁸ (AUTHOR), Hao, Zhaodong⁸ (AUTHOR), Wang, Edwin⁹ (AUTHOR), Wei, Yangdou¹⁰ (AUTHOR), Cuthbert, Richard¹¹ (AUTHOR), Kochian, Leon V.¹² (AUTHOR), Sharpe, Andrew¹² (AUTHOR), Provart, Nicholas⁶ (AUTHOR)

Source: Plant Cell. Dec2019, Vol. 31 Issue 12, p2888-2911. 24p.

Auxin response cell-autonomously controls ground tissue initiation in the early Arabidopsis embryo.

Authors: Möller, Barbara K., ten Hove, Colette A., Daoquan Xiang, Williams, Nerys, López, Lorena González, Yoshida, Saiko, Smit, Margot, Datla, Raju, Weijers, Dolf

Source: Proceedings of the National Academy of Sciences of the United States of America; 3/21/2017, Vol. 114 Issue 12, pE2533-E2539, 7p

Subject Terms: ARABIDOPSIS, PHOTOSYNTHESIS, AUXIN, PLANT tissue culture, PLANT cells & tissues

Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.

Authors: Khan, Madiha, Ragni, Laura, Tabb, Paul, Salasini, Brenda C., Chatfield, Steven, Datla, Raju, Lock, John, Xiahezi Kuai, Després, Charles, Proveniers, Marcel, Cao Yongguo, Daoquan Xiang, Morin, Halima, Rullière, Jean-Pierre, Citerne, Sylvie, Hepworth, Shelley R., Pautot, Véronique

Source: Plant Physiology; Nov2015, Vol. 169 Issue 3, p2166-2186, 32p

Subject Terms: ARABIDOPSIS, FLOWER varieties, FLOWER development, PLANT growth, GENE expression in plants

Genome-Wide Analysis Reveals Gene Expression and Metabolic Network Dynamics during Embryo Development in Arabidopsis.

Authors: Daoquan Xiang¹, Venglat, Prakash¹, Tibiche, Chabane², Hui Yang¹, Risseeuw, Eddy¹, Yongguo Cao¹, Babic, Vivijan¹, Cloutier, Mathieu², Keller, Wilf¹, Wang, Edwin², Selvaraj, Gopalan¹, Datla, Raju¹ raju.datla@nrc-cnrc.gc.ca

Source: Plant Physiology. May2011, Vol. 156 Issue 1, p346-356. 11p.

Subject Terms: *SOYBEAN cyst nematode, *GENE expression in plants, *ARABIDOPSIS thaliana, *TRANSCRIPTION factors, *PLANT genetics