The evolutionarily ancient FOXA transcription factors shape the murine gut microbiome via control of epithelial glycosylation

Authors: Swisa, Avital, Kieckhaefer, Julia, Daniel, Scott G., El-Mekkoussi, Hilana, Kolev, Hannah M., Tigue, Mark, Jin, Chunsheng, Assenmacher, Charles-Antoine, Dohnalová, Lenka, Thaiss, Christoph A., Karlsson, Niclas G., Bittinger, Kyle, Kaestner, Klaus H.

Source: In Developmental Cell 19 August 2024 59(16):2069-2084

Surgery for Crohn’s Disease Is Associated With a Dysbiotic Microbiome and Metabolome: Results From Two Prospective Cohorts

Authors: Wolf, Douglas C., Hron, Bridget, Hanson, John S., Mohanty, Sanjib P., Fogel, Ronald P., Levy, L. Campbell, Iskandar, Heba N., Fischer, Monika, Cohen, Benjamin, Swaminath, Arun, Kane, Sunanda, McCabe, Robert P., Jr., Yen, Eugene F., Hanauer, Stephen B., Hudesman, David P., Afzali, Anita, Kelly, Colleen, Weber, John R., Mahadevan, Uma, Herfarth, Hans, Katz, Jeffery, Taleban, Sasha, Rubin, David T., Yachyshyn, Bruce, Reynolds, Gorman J., Gerich, Mark, Dryden, Gerald W., Quezada, Sandra, Higgins, Peter D.R., Shmidt, Eugenia, Lewis, James D., Schwartz, Marc B., Flynn, Ann D., Saha, Sumona, Horst, Sara N., Chiorean, Michael, Green, Patrick D., Scherl, Ellen J., Sandler, Robert, Brotherton, Carol, Albenberg, Lindsey, Valentine, John F., Suskind, David, Meyer, Andrea, Compher, Charlene W., Bewtra, Meenakshi, Kaur, Manreet, Dassopoulos, Themistocles, Snapper, Scott B., Korzenik, Joshua R., Bohm, Matthew, Raffals, Laura, Beniwal-Patel, Poonam, Hudesman, David, Russ, Kirk, Brook, Loren, Pekow, Joel, Cross, Raymond, Wong, Uni, Bishu, Shrinivas, Duerr, Richard, Caldera, Freddy, Scoville, Elizabeth, Deepak, Parakkal, Ciorba, Matthew, Daniel, Scott G., Li, Hongzhe, Hao, Fuhua, Patterson, Andrew D., Hecht, Aaron L., Brensinger, Colleen M., Wu, Gary D., Bittinger, Kyle

Source: In Cellular and Molecular Gastroenterology and Hepatology 2024 18(3)

Distinct community structures of the fungal microbiome and respiratory health in adults with cystic fibrosis

Authors: Hong, Gina, Daniel, Scott G, Lee, Jung-jin, Bittinger, Kyle, Glaser, Laurel, Mattei, Lisa M., Dorgan, Daniel J., Hadjiliadis, Denis, Kawut, Steven M., Collman, Ronald G.

Source: In Journal of Cystic Fibrosis July 2023 22(4):636-643

Outcomes and Predictors of Sustained Remission After Drug Withdrawal in Pediatric Crohn Disease

Authors: Stein, Ronen, Daniel, Scott G., Baldassano, Robert N., Feigenbaum, Kara, Kachelries, Kelly, Sigall-Boneh, Rotem, Weston, Sarah, Levine, Arie, Bittinger, Kyle

Source: Journal of pediatric gastroenterology and nutrition. 75(5):608-615

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100179133456.0x000001&indx=1&recIds=ETOCvdc_100179133456.0x000001

A Randomized Trial Comparing the Specific Carbohydrate Diet to a Mediterranean Diet in Adults With Crohn’s Disease

Authors: Lewis, James D., Sandler, Robert S., Brotherton, Carol, Brensinger, Colleen, Li, Hongzhe, Kappelman, Michael D., Daniel, Scott G., Bittinger, Kyle, Albenberg, Lindsey, Valentine, John F., Hanson, John S., Suskind, David L., Meyer, Andrea, Compher, Charlene W., Bewtra, Meenakshi, Saxena, Akriti, Dobes, Angela, Cohen, Benjamin L., Flynn, Ann D., Fischer, Monika, Saha, Sumona, Swaminath, Arun, Yacyshyn, Bruce, Scherl, Ellen, Horst, Sara, Curtis, Jeffrey R., Braly, Kimberly, Nessel, Lisa, McCauley, Maureen, McKeever, Liam, Herfarth, Hans

Source: In Gastroenterology September 2021 161(3):837-852

The Impact of Introducing Patient-Reported Inflammatory Bowel Disease Symptoms via Electronic Survey on Clinic Visit Length, Patient and Provider Satisfaction, and the Environment Microbiome

Authors: Roy Paladhi, Unmesha, Harb, Ali H, Daniel, Scott G, Dawwas, Ghadeer K, Schnellinger, Erin M, Wollack, Colin, Aberra, Faten N, Bewtra, Meenakshi, Green, Jesse A, Klaproth, Jan-Michael A, Lichtenstein, Gary R, Saxena, Akriti, Berera, Shivali, Buchner, Anna, Mehta, Shivan J, Osterman, Mark T, Rashid, Farzana, Tomov, Vesselin, Caldera, Freddy, Sumona, Saha, Mahadevan, Uma, Roy, Abhik, Nessel, Lisa, Wu, Gary D, Bittinger, Kyle, Lewis, James D

Source: Inflammatory bowel diseases. 27(5):746-750

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100161613235.0x000001&indx=1&recIds=ETOCvdc_100161613235.0x000001

A quantitative approach to measure and predict microbiome response to antibiotics.

Authors: Tu, Vincent, Yue Ren, Tanes, Ceylan, Mukhopadhyay, Sagori, Daniel, Scott G., Hongzhe Li, Bittinger, Kyle

Source: MSphere; Sep2024, Vol. 9 Issue 9, p1-14, 14p

This result is not displayed to guests.
Login for full access.

Effects of dietary zinc on the gut microbiome and resistome of the gestating cow and neonatal calf.

Authors: Drake, Mary Jane, Daniel, Scott G., Baker, Linda D., Indugu, Nagaraju, Bittinger, Kyle, Dickens, Charlene, Zackular, Joseph P., Pitta, Dipti, Redding, Laurel E.

Source: Animal Microbiome; 7/19/2024, Vol. 6 Issue 1, p1-14, 14p

Subject Terms: GUT microbiome, ZINC supplements, ZINC, CALVES, COWS, SHOTGUN sequencing, ANIMAL health

Innate type 2 immunity controls hair follicle commensalism by Demodex mites

Authors: Ricardo-Gonzalez, Roberto R., Kotas, Maya E., O'Leary, Claire E., Singh, Katelyn, Damsky, William, Liao, Chang, Arouge, Elizabeth, Tenvooren, Iliana, Marquez, Diana M., Schroeder, Andrew W., Cohen, Jarish N., Fassett, Marlys S., Lee, Jinwoo, Daniel, Scott G., Bittinger, Kyle, Díaz, Roberto Efraín, Fraser, James S., Ali, Niwa, Ansel, K. Mark, Spitzer, Matthew H., Liang, Hong-Erh, Locksley, Richard M.

Source: Immunity. 55(10):1891-1908.e12

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100186603449.0x000001&indx=1&recIds=ETOCvdc_100186603449.0x000001

Preterm infants at low risk for early-onset sepsis differ in early fecal microbiome assembly

Authors: Mukhopadhyay, Sagori, Lee, Jung-Jin, Hartman, Erica, Woodford, Emily, Dhudasia, Miren B., Mattei, Lisa M., Daniel, Scott G., Wade, Kelly C., Underwood, Mark A., Bittinger, Kyle

Source: Gut microbes. 14(1)

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100184896328.0x000001&indx=1&recIds=ETOCvdc_100184896328.0x000001

Administration of Bifidobacterium animalis subsp. lactis strain BB-12® in healthy children: characterization, functional composition, and metabolism of the gut microbiome.

Authors: Vizioli, Carlotta, Jaime-Lara, Rosario, Daniel, Scott G., Franks, Alexis, Diallo, Ana F., Bittinger, Kyle, Tan, Tina P., Merenstein, Daniel J., Brooks, Brianna, Joseph, Paule V., Maki, Katherine A.

Source: Frontiers in Microbiology; 2023, p1-16, 16p

Subject Terms: STREPTOCOCCUS thermophilus, BIFIDOBACTERIUM, GUT microbiome, METABOLISM, LACTOBACILLUS delbrueckii, MICROBIAL diversity, PROBIOTICS, MICROBIAL metabolites

Addition of cariogenic pathogens to complex oral microflora drives significant changes in biofilm compositions and functionalities.

Authors: Liu, Yuan, Daniel, Scott G., Kim, Hye-Eun, Koo, Hyun, Korostoff, Jonathan, Teles, Flavia, Bittinger, Kyle, Hwang, Geelsu

Source: Microbiome; 6/1/2023, Vol. 11 Issue 1, p1-17, 17p

Subject Terms: STREPTOCOCCUS mutans, CANDIDA albicans, SUCROSE, DENTAL caries, BIOFILMS, PATHOGENIC microorganisms, CONFOCAL microscopy, ORAL diseases

The microbiome stabilizes circadian rhythms in the gut.

Authors: Yueliang Zhang, Yongjun Li, Barber, Annika F., Noya, Sara B., Williams, Julie A., Fu Li, Daniel, Scott G., Bittinger, Kyle, Jichao Fang, Sehgal, Amita

Source: Proceedings of the National Academy of Sciences of the United States of America; 1/31/2023, Vol. 120 Issue 5, p1-11, 25p

Subject Terms: CIRCADIAN rhythms, GUT microbiome, HISTONE acetylation, GENE expression

Disruption of intestinal oxygen balance in acute colitis alters the gut microbiome

Authors: Zong, Wenjing, Friedman, Elliot S., Allu, Srinivasa Rao, Firrman, Jenni, Tu, Vincent, Daniel, Scott G., Bittinger, Kyle, Liu, LinShu, Vinogradov, Sergei A., Wu, Gary D.

Source: Gut Microbes; December 2024, Vol. 16 Issue: 1

Excess dietary fructose does not alter gut microbiota or permeability in humans: A pilot randomized controlled study.

Authors: Alemán, José O.^1,2, jose.aleman@nyulangone.org, Henderson, Wendy A.³, Walker, Jeanne M.⁴, Ronning, Andrea⁵, Jones, Drew R.², Walter, Peter J.⁶, Daniel, Scott G.⁷, Bittinger, Kyle⁷, Vaughan, Roger⁸, MacArthur, Robert⁹, Chen, Kun³, Breslow, Jan L.¹, Holt, Peter R.¹

Source: Journal of Clinical & Translational Science; Jul2021, Vol. 5 Issue 1, p1-10, 10p

The Impact of Introducing Patient-Reported Inflammatory Bowel Disease Symptoms via Electronic Survey on Clinic Visit Length, Patient and Provider Satisfaction, and the Environment Microbiome.

Authors: Paladhi, Unmesha Roy, Harb, Ali H, Daniel, Scott G, Dawwas, Ghadeer K, Schnellinger, Erin M, Wollack, Colin, Aberra, Faten N, Bewtra, Meenakshi, Green, Jesse A, Klaproth, Jan-Michael A, Lichtenstein, Gary R, Saxena, Akriti, Berera, Shivali, Buchner, Anna, Mehta, Shivan J, Osterman, Mark T, Rashid, Farzana, Tomov, Vesselin, Caldera, Freddy, Sumona, Saha

Source: Inflammatory Bowel Diseases; May2021, Vol. 27 Issue 5, p746-750, 5p

Pediatric Patients with Immune Thrombocytopenic Purpura Have a Dysbiotic Gut Microbiome at Time of Diagnosis

Authors: Oved, Joseph H, Elgarten, Caitlin W, Daniel, Scott G, Denu, Lidiya, Silverman, Michael, Bittinger, Kyle, Olson, Timothy S., Lambert, Michele P.

Source: In Blood 23 November 2021 138 Supplement 1:3169-3169

The Mucosally-Adherent Rectal Microbiota Contains Features Unique to Alcohol-Related Cirrhosis.

Authors: Shen, Ting-Chin David, Daniel, Scott G., Patel, Shivali, Kaplan, Emily, Phung, Lillian, Lemelle-Thomas, Kaylin, Chau, Lillian, Herman, Lindsay, Trisolini, Calvin, Stonelake, Aimee, Toal, Emily, Khungar, Vandana, Bittinger, Kyle, Reddy, K. Rajender, Wu, Gary D.

Source: Gut Microbes; 2021, Vol. 13 Issue 1, p1-30, 30p

This result is not displayed to guests.
Login for full access.