Maternal e-cigarette exposure alters DNA methylome, site-specific CpG and CH methylation, and transcriptomic signatures in the neonatal brain

Authors: Andrew Walayat, Maryam Hosseini, Chirag Nepal, Yong Li, Wanqiu Chen, Zhong Chen, Xiaohui Huang, Xuesi M. Shao, Lubo Zhang, Charles Wang, Daliao Xiao

Source: Scientific Reports, Vol 14, Iss 1, Pp 1-13 (2024)

Subject Terms: Prenatal e-cigarette exposure, Neonatal brain, CpGs/CHs methylation, DNA methylome, Transcriptomic alteration, Medicine, Science

File Description: electronic resource

Relation: https://doaj.org/toc/2045-2322

Access URL: https://doaj.org/article/d915b236ec704759bebaef112c08f9c5

Integrated analysis of the DNA methylome and RNA transcriptome during the development of skeletal muscle in Duroc pigs

Authors: Shi-yin Li, Yun-zhou Wang, Wei Chen, Li-xia Ma, Jian-min Zhang, Yu-lun Zhang, Yong-qing Zeng

Source: BMC Genomics, Vol 25, Iss 1, Pp 1-13 (2024)

Subject Terms: Duroc pigs, WGBS, DNA methylome, Transcriptome, Skeletal muscle, Biotechnology, TP248.13-248.65, Genetics, QH426-470

File Description: electronic resource

Relation: https://doaj.org/toc/1471-2164

Access URL: https://doaj.org/article/ea227d976d6340878ffa50dbd4b14e9a

Chilling-induced peach flavor loss is associated with expression and DNA methylation of functional genes

Authors: Wenyi Duan, Can Yang, Xiangmei Cao, Chunyan Wei, Kunsong Chen, Xian Li, Bo Zhang

Source: Journal of Advanced Research, Vol 53, Iss , Pp 17-31 (2023)

Subject Terms: DNA methylome, Fruit flavor, Cold storage, Regulatory network, Transcriptome, Transcription factors (TFs), Medicine (General), R5-920, Science (General), Q1-390

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S2090123222002697; https://doaj.org/toc/2090-1232

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Whole-genome transcriptome and DNA methylation dynamics of pre-implantation embryos reveal progression of embryonic genome activation in buffaloes

Authors: Penghui Fu, Du Zhang, Chunyan Yang, Xiang Yuan, Xier Luo, Haiying Zheng, Yanfei Deng, Qingyou Liu, Kuiqing Cui, Fei Gao, Deshun Shi

Source: Journal of Animal Science and Biotechnology, Vol 14, Iss 1, Pp 1-17 (2023)

Subject Terms: Buffalo, DNA methylome, Embryonic genome activation, Maternal-to-zygote transition, Transcriptome, Animal culture, SF1-1100, Veterinary medicine, SF600-1100

File Description: electronic resource

Relation: https://doaj.org/toc/2049-1891

Access URL: https://doaj.org/article/f2223eb915484b158d60702a5c961b01

The DNA methylation status of the serotonin metabolic pathway associated with reproductive inactivation induced by long-light exposure in Magang geese

Authors: Jiaxin Liu, Yanglong Xu, Yushuai Wang, Jinning Zhang, Yuting Fu, Sui Liufu, Danli Jiang, Jianqiu Pan, Hongjia Ouyang, Yunmao Huang, Yunbo Tian, Xu Shen

Source: BMC Genomics, Vol 24, Iss 1, Pp 1-13 (2023)

Subject Terms: DNA methylome, Gene expression, Long-light exposure, Reproductive inactivity, Magang geese, Biotechnology, TP248.13-248.65, Genetics, QH426-470

File Description: electronic resource

Relation: https://doaj.org/toc/1471-2164

Access URL: https://doaj.org/article/8e26c2b37c15452eba84191c05fd6c69

Long‐Read Sequencing Reveals Extensive DNA Methylations in Human Gut Phagenome Contributed by Prevalently Phage‐Encoded Methyltransferases

Authors: Chuqing Sun, Jingchao Chen, Menglu Jin, Xueyang Zhao, Yun Li, Yanqi Dong, Na Gao, Zhi Liu, Peer Bork, Xing‐Ming Zhao, Wei‐Hua Chen

Source: Advanced Science, Vol 10, Iss 25, Pp n/a-n/a (2023)

Subject Terms: DNA methylome, DNA methyltransferase, double‐stranded DNA phage, PacBio sequencing, phage–bacterium interaction, phage–host prediction, Science

File Description: electronic resource

Relation: https://doaj.org/toc/2198-3844

Access URL: https://doaj.org/article/858c8eab8d8047b4a44ea6a4f0c4da7d

Altered DNA methylome profiles of blood leukocytes in Chinese patients with mild cognitive impairment and Alzheimer’s disease

Authors: Shaochang Wu, Fan Yang, Shan Chao, Bo Wang, Wuqian Wang, He Li, Limei Yu, Lin He, Xingwang Li, Liya Sun, Shengying Qin

Source: Frontiers in Genetics, Vol 14 (2023)

Subject Terms: mild cognitive impairment, Alzheimer’s disease, blood DNA methylome profile, differentially methylated CpG sites, potential biomarker, Genetics, QH426-470

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fgene.2023.1175864/full; https://doaj.org/toc/1664-8021

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Identification and Characterization of a New Regulator, TagR, for Environmental Stress Resistance Based on the DNA Methylome of Streptomyces roseosporus

Authors: Wen-Li Gao, Jiao-Le Fang, Chen-Yang Zhu, Wei-Feng Xu, Zhong-Yuan Lyu, Xin-Ai Chan, Qing-Wei Zhao, Yong-Quan Li

Source: Microbiology Spectrum, Vol 11, Iss 3 (2023)

Subject Terms: DNA methylome, environmental stress resistance regulator, TagR, WTA ABC transport system, daptomycin, Streptomyces rosesosporus, Microbiology, QR1-502

File Description: electronic resource

Relation: https://doaj.org/toc/2165-0497

Access URL: https://doaj.org/article/c3b8cff9475640f4a6317dfbde912df3

Genome-Wide Profiling of Transcriptome and DNA Methylome in Human Embryonic Stem Cells Exposed to Extractable Organic Matter from PM2.5

Authors: Jianming Wang, Tiantian Liu, Jin Wang, Tao Chen, Yan Jiang

Source: Toxics, Vol 11, Iss 10, p 840 (2023)

Subject Terms: PM2.5, human embryonic stem cells, transcriptome, DNA methylome, toxicity, Chemical technology, TP1-1185

File Description: electronic resource

Relation: https://www.mdpi.com/2305-6304/11/10/840; https://doaj.org/toc/2305-6304

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Genome-wide alternation and effect of DNA methylation in the impairments of steroidogenesis and spermatogenesis after PM2.5 exposure

Authors: Zhonghao Zhang, Jiankang Wang, Fuquan Shi, Yingqing Li, Peng Zou, Ying Tang, Chang Liu, Yimeng Wang, Xi Ling, Lei Sun, Cuiqing Liu, Yanshu Zhang, Fei Gao, Qing Chen, Lin Ao, Fei Han, Jinyi Liu, Jia Cao

Source: Environment International, Vol 169, Iss , Pp 107544- (2022)

Subject Terms: Male reproductive system, DNA methylome, PM2.5, Spermatogenesis, Environmental sciences, GE1-350

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S0160412022004718; https://doaj.org/toc/0160-4120

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Clozapine Long-Term Treatment Might Reduce Epigenetic Age Through Hypomethylation of Longevity Regulatory Pathways Genes

Authors: Blanca Estela Pérez-Aldana, José Jaime Martínez-Magaña, Yerye Gibrán Mayén-Lobo, David José Dávila-Ortiz de Montellano, Carlos Luis Aviña-Cervantes, Alberto Ortega-Vázquez, Alma Delia Genis-Mendoza, Emmanuel Sarmiento, Ernesto Soto-Reyes, Isela Esther Juárez-Rojop, Carlos Alfonso Tovilla-Zarate, Thelma Beatriz González-Castro, Humberto Nicolini, Marisol López-López, Nancy Monroy-Jaramillo

Source: Frontiers in Psychiatry, Vol 13 (2022)

Subject Terms: DNA methylome, clozapine, psychotic disorders, epigenetic age, longevity, Psychiatry, RC435-571

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fpsyt.2022.870656/full; https://doaj.org/toc/1664-0640

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Combined Analysis of RRBS DNA Methylome and Transcriptome Reveal Novel Candidate Genes Related to Porcine Clostridium perfringens Type C-Induced Diarrhea

Authors: Xiaoyu Huang, Qiaoli Yang, Zunqiang Yan, Pengfei Wang, Hairen Shi, Jie Li, Xuefeng Shang, Shuangbao Gun

Source: Frontiers in Genetics, Vol 13 (2022)

Subject Terms: DNA methylome, transcriptome, Clostridium perfringens type C, diarrhea, pig, resistance, Genetics, QH426-470

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fgene.2022.803477/full; https://doaj.org/toc/1664-8021

Access URL: https://doaj.org/article/028f04b14ef64fb9b9831b0de9dd25db

Multi-Omics Analysis Reveals Changes in the Intestinal Microbiome, Transcriptome, and Methylome in a Rat Model of Chronic Non-bacterial Prostatitis: Indications for the Existence of the Gut-Prostate Axis

Authors: Junsheng Liu, Yihe Wang, Guangwen Zhang, Liu Liu, Xichun Peng

Source: Frontiers in Physiology, Vol 12 (2022)

Subject Terms: chronic non-bacterial prostatitis, DNA methylome, gut microbiota, gut-prostate axis, microbiome, transcriptome, Physiology, QP1-981

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fphys.2021.753034/full; https://doaj.org/toc/1664-042X

Access URL: https://doaj.org/article/4662955988e14f1482710326b3b22f7c

Whole-Genome DNA Methylation Dynamics of Sheep Preimplantation Embryo Investigated by Single-Cell DNA Methylome Sequencing

Authors: Zijing Zhang, Jiawei Xu, Shijie Lyu, Xiaoling Xin, Qiaoting Shi, Yongzhen Huang, Xiang Yu, Xiaoting Zhu, Zhiming Li, Xianwei Wang, Limin Lang, Zhaoxue Xu, Eryao Wang

Source: Frontiers in Genetics, Vol 12 (2021)

Subject Terms: sheep, early embryo development, methylation, developmental block, single-cell DNA methylome sequencing, Genetics, QH426-470

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fgene.2021.753144/full; https://doaj.org/toc/1664-8021

Access URL: https://doaj.org/article/c576dfb382a341b6a8be3ca185ede998

DNA methylation and expression analyses reveal epialleles for the foliar disease resistance genes in peanut (Arachis hypogaea L.)

Authors: R. S. Bhat, J. Rockey, Kenta Shirasawa, I. S. Tilak, M. P. Brijesh Patil, V. B. Reddy Lachagari

Source: BMC Research Notes, Vol 13, Iss 1, Pp 1-7 (2020)

Subject Terms: Peanut, Genotypes differing for foliar disease response, DNA methylome, Transcriptome, Differentially methylated genes, Expression levels of methylated genes, Medicine, Biology (General), QH301-705.5, Science (General), Q1-390

File Description: electronic resource

Relation: https://doaj.org/toc/1756-0500

Access URL: https://doaj.org/article/9135f2a3a62d4031a17548136323ceca

Sperm Functional Genome Associated With Bull Fertility

Authors: Memmet Özbek, Mustafa Hitit, Abdullah Kaya, Frank Dean Jousan, Erdogan Memili

Source: Frontiers in Veterinary Science, Vol 8 (2021)

Subject Terms: proteomics, metabolomics, transcriptomics, DNA methylome, chromatin dynamics, bull fertility, Veterinary medicine, SF600-1100

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Relation: https://www.frontiersin.org/articles/10.3389/fvets.2021.610888/full; https://doaj.org/toc/2297-1769

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DNA methylome signatures as epigenetic biomarkers of hexanal associated with lung toxicity

Authors: Yoon Cho, Mi-Kyung Song, Jae-Chun Ryu

Source: PeerJ, Vol 9, p e10779 (2021)

Subject Terms: DNA methylome, Epigenetics, Hexanal, Aldehyde, Lung toxicity, Medicine, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://peerj.com/articles/10779.pdf; https://peerj.com/articles/10779/; https://doaj.org/toc/2167-8359

Access URL: https://doaj.org/article/d7f2814a318c46af9292d18eefccdb2f

Association of four imprinting disorders and ART

Authors: Hiromitsu Hattori, Hitoshi Hiura, Akane Kitamura, Naoko Miyauchi, Norio Kobayashi, Souta Takahashi, Hiroaki Okae, Koichi Kyono, Masayo Kagami, Tsutomu Ogata, Takahiro Arima

Source: Clinical Epigenetics, Vol 11, Iss 1, Pp 1-12 (2019)

Subject Terms: Imprinting disorders, Assisted reproductive technologies (ART), Silver-Russell syndrome (SRS), Nationwide epidemiological study, DNA methylome, DNA methylation variations (DMVs), Medicine, Genetics, QH426-470

File Description: electronic resource

Relation: http://link.springer.com/article/10.1186/s13148-019-0623-3; https://doaj.org/toc/1868-7075; https://doaj.org/toc/1868-7083

Access URL: https://doaj.org/article/47abcbd8772d4994a9a26c6f2802d77f

Combined Analysis of DNA Methylome and Transcriptome Reveal Novel Candidate Genes Related to Porcine Escherichia coli F4ab/ac-Induced Diarrhea

Authors: Wenwen Wang, Chuanli Zhou, Hui Tang, Ying Yu, Qin Zhang

Source: Frontiers in Cellular and Infection Microbiology, Vol 10 (2020)

Subject Terms: DNA methylome, transcriptome, enterotoxigenic Escherichia coli, diarrhea, pig, Microbiology, QR1-502

File Description: electronic resource

Relation: https://www.frontiersin.org/article/10.3389/fcimb.2020.00250/full; https://doaj.org/toc/2235-2988

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Predicting High Blood Pressure Using DNA Methylome-Based Machine Learning Models

Authors: Thi Mai Nguyen, Hoang Long Le, Kyu-Baek Hwang, Yun-Chul Hong, Jin Hee Kim

Source: Biomedicines, Vol 10, Iss 6, p 1406 (2022)

Subject Terms: DNA methylome, machine learning, deep learning, high blood pressure, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://www.mdpi.com/2227-9059/10/6/1406; https://doaj.org/toc/2227-9059

Access URL: https://doaj.org/article/0a866dc7c9d145dda26e835070bfb40e