DNA origami drives gene expression in a human cell culture system.

Authors: Oh, Chang Yong^1,2 (AUTHOR) dngk3325@gmail.com, Kaur, Haninder³ (AUTHOR), Tuteja, Geetu³ (AUTHOR), Henderson, Eric R.³ (AUTHOR)

Source: Scientific Reports. 11/9/2024, p1-12. 12p.

Subject Terms: *DNA folding, *HUMAN cell culture, *DNA nanotechnology, *GENE expression, *GREEN fluorescent protein

The Avoidance of Purine Stretches by Cancer Mutations.

Authors: Vikhorev, Aleksandr V.¹ (AUTHOR), Savelev, Ivan V.¹ (AUTHOR), Polesskaya, Oksana O.¹ (AUTHOR), Rempel, Michael M.¹ (AUTHOR), Miller, Richard A.² (AUTHOR), Vetcher, Alexandre A.^3,4 (AUTHOR) avetcher@gmail.com, Myakishev-Rempel, Max¹ (AUTHOR) avetcher@gmail.com

Source: International Journal of Molecular Sciences. Oct2024, Vol. 25 Issue 20, p11050. 16p.

Subject Terms: *DNA folding, *GENE expression, *DNA structure, *GENETIC regulation, *ETIOLOGY of cancer

Machine learning-based prediction of DNA G-quadruplex folding topology with G4ShapePredictor.

Authors: Liew, Donn¹ (AUTHOR), Lim, Zi Way¹ (AUTHOR), Yong, Ee Hou¹ (AUTHOR) eehou@ntu.edu.sg

Source: Scientific Reports. 10/16/2024, Vol. 14 Issue 1, p1-13. 13p.

Subject Terms: *MACHINE learning, *DNA folding, *DNA, *DRUG target, *DNA replication

分子ナノシステムの設計・計測による筋収縮原理の理解.

Alternate Title: Molecular Nanosystems for Elucidating the Principle of Muscle Contraction.

Authors: 岩城光宏^1,2 iwakim@nict.go.jp, 藤田恵介¹ keisuke.fujita@riken.jp, 柳田敏雄^1,3 yanagida@fbs.osaka-u.ac.jp, 池崎圭吾⁴ ikezaki@ubi.s.u-tokyo.ac.jp

Source: Seibutsu Butsuri. 2024, Vol. 64 Issue 5, p242-246. 5p.

Subject Terms: *MOLECULAR motor proteins, *DNA folding, *RATCHETS, *ACTIN, *DNA, *MYOSIN

DNA Nanocarriers for Delivery of sgRNA/Cas9 Ribonucleoprotein.

Authors: Hanyin Zhu^1,2, Jing Fan^1,3, Changping Yang^1,3, Jianbing Liu^1,2 liujb@nanoctr.cn, Baoquan Ding^1,2,3 dingbq@nanoctr.cn

Source: Nano Biomedicine & Engineering. Sep2024, Vol. 16 Issue 3, p331-344. 14p.

Subject Terms: *DNA folding, *GENOME editing, *BASE pairs, *NUCLEIC acids, *GENE therapy, *DNA nanotechnology

A mean-field theory for characterizing the closing rates of DNA origami hinges.

Authors: Yeboah, Isaac O.¹ (AUTHOR), Young, Robert T.¹ (AUTHOR), Mosioma, Mark¹ (AUTHOR), Sensale, Sebastian^1,2 (AUTHOR) ssensale@iu.edu

Source: Journal of Chemical Physics. 8/21/2024, Vol. 161 Issue 7, p1-12. 12p.

Subject Terms: *RAPID diagnostic tests, *DNA folding, *COMPLEMENTARY DNA, *SINGLE-stranded DNA, *CLASSICAL mechanics, *DNA nanotechnology

Visualization of the hepatic and renal cell uptake and trafficking of tetrahedral DNA origami in tumour.

Authors: Zhu, Shitai^1,2 (AUTHOR), Peng, Hongzhen^3,4 (AUTHOR), Kong, Huating³ (AUTHOR) konght@sari.ac.cn, Yan, Qinglong^4,5 (AUTHOR), Xia, Kai^5,6 (AUTHOR), Wang, Lihua^1,2,4 (AUTHOR), Zhu, Ying^1,2,4 (AUTHOR), Luo, Shihua⁷ (AUTHOR) jqab@163.com

Source: Cell Proliferation. Aug2024, Vol. 57 Issue 8, p1-10. 10p.

Subject Terms: *KUPFFER cells, *DNA folding, *BIOLOGICAL systems, *DNA nanotechnology, *DRUG delivery systems

HiViPore: a highly viable in-flow compression for a one-step cell mechanoporation in microfluidics to induce a free delivery of nano- macro-cargoes.

Authors: Maremonti, Maria Isabella¹ (AUTHOR), Panzetta, Valeria^1,2 (AUTHOR), Netti, Paolo Antonio^1,2 (AUTHOR), Causa, Filippo¹ (AUTHOR) causa@unina.it

Source: Journal of Nanobiotechnology. 7/27/2024, Vol. 22 Issue 1, p1-19. 19p.

Subject Terms: *MICROFLUIDICS, *DNA folding, *VISCOELASTIC materials, *CELL physiology, *MICROFLUIDIC devices, *CRYOPROTECTIVE agents, *COATED vesicles, *CELL membranes

A Review of Fabrication of DNA Origami Plasmonic Structures for the Development of Surface-Enhanced Raman Scattering (SERS) Platforms.

Authors: Mehmandoust, Saeideh¹ (AUTHOR), Eskandari, Vahid¹ (AUTHOR) vahid.eskandari.2234@gmail.com, Karooby, Elaheh² (AUTHOR)

Source: Plasmonics. Jun2024, Vol. 19 Issue 3, p1131-1143. 13p.

Subject Terms: *DNA folding, *SERS spectroscopy, *PLASMONICS, *RAMAN scattering, *MOLECULAR structure, *RAMAN spectroscopy, *DNA structure

ANNaMo: Coarse-grained modeling for folding and assembly of RNA and DNA systems.

Authors: Tosti Guerra, F.¹ (AUTHOR) francesco.tostiguerra@uniroma1.it, Poppleton, E.^2,3 (AUTHOR), Šulc, P.^2,4 (AUTHOR), Rovigatti, L.¹ (AUTHOR) lorenzo.rovigatti@uniroma1.it

Source: Journal of Chemical Physics. 5/28/2024, Vol. 160 Issue 20, p1-14. 14p.

Subject Terms: *RNA, *DNA folding, *BIOLOGICAL systems, *DNA, *NUCLEIC acids, *VIRAL nonstructural proteins, *OLIGOMERS

DNA origami-based composite nanosandwich for iteratively potentiated chemo-immunotherapy.

Authors: Li, Mengyue¹ (AUTHOR), Zhang, Hanxi¹ (AUTHOR), Xiong, Peizheng² (AUTHOR), He, Yuhan¹ (AUTHOR), Zhou, Wanyi¹ (AUTHOR), Wu, Chunhui¹ (AUTHOR), Liao, Xiaoling^1,3 (AUTHOR) 2007099@cqust.edu.cn, Zhang, Wei¹ (AUTHOR) zhangweigk@med.uestc.edu.cn, Yang, Hong¹ (AUTHOR) yanghongyh@uestc.edu.cn, Liu, Yiyao^1,2,3,4 (AUTHOR) liuyiyao@uestc.edu.cn

Source: Journal of Controlled Release. Mar2025, Vol. 379, p452-465. 14p.

Subject Terms: *CYTOTOXIC T cells, *DNA folding, *IMMUNOLOGICAL adjuvants, *CELL death, *TUMOR growth

Z-DNA at the crossroads: untangling its role in genome dynamics.

Authors: Sahayasheela, Vinodh J.^1,2,3, Ooga, Mitsuharu¹, Kumagai, Tomotaka¹, Sugiyama, Hiroshi^1,3, sugiyama.hiroshi.3s@kyoto-u.ac.jp

Source: Trends in Biochemical Sciences; Mar2025, Vol. 50 Issue 3, p267-279, 13p

News and Analysis of the Global Innovation Scene.

Authors: McCausland, Tammy (AUTHOR)

Source: Research Technology Management. Sep/Oct2023, Vol. 66 Issue 5, p2-9. 8p.

Subject Terms: *Artificial intelligence, *Natural language processing, Positive pressure ventilation, DNA folding, Machine learning, Language models

Wireframe DNA Origami for the Cellular Delivery of Platinum(II)-Based Drugs.

Authors: De Luca, Erik¹ (AUTHOR) erik.deluca@unisalento.it, Wang, Yang² (AUTHOR) yang.wang@ki.se, Baars, Igor² (AUTHOR) igor.baars@ki.se, De Castro, Federica¹ (AUTHOR) federica.decastro@unisalento.it, Lolaico, Marco² (AUTHOR) marco.lolaico@ki.se, Migoni, Danilo¹ (AUTHOR) danilo.migoni@unisalento.it, Ducani, Cosimo² (AUTHOR) cosimo.ducani@ki.se, Benedetti, Michele¹ (AUTHOR) michele.benedetti@unisalento.it, Högberg, Björn² (AUTHOR) bjorn.hogberg@ki.se, Fanizzi, Francesco Paolo¹ (AUTHOR) fp.fanizzi@unisalento.it

Source: International Journal of Molecular Sciences. Dec2023, Vol. 24 Issue 23, p16715. 13p.

Subject Terms: *DNA folding, *DNA nanotechnology, *PLATINUM compounds, *PLATINUM, *CISPLATIN, *PEMETREXED

Detecting continuous structural heterogeneity in single-molecule localization microscopy data.

Authors: Haghparast, Sobhan¹ (AUTHOR), Stallinga, Sjoerd¹ (AUTHOR) S.Stallinga@tudelft.nl, Rieger, Bernd¹ (AUTHOR) B.Rieger@tudelft.nl

Source: Scientific Reports. 11/13/2023, Vol. 13 Issue 1, p1-11. 11p.

Subject Terms: *HETEROGENEITY, *DNA folding, *MICROSCOPY, *SIGNAL-to-noise ratio, *THREE-dimensional imaging

Accelerating the characterization of dynamic DNA origami devices with deep neural networks.

Authors: Wang, Yuchen¹ (AUTHOR) wang.9298@osu.edu, Jin, Xin² (AUTHOR), Castro, Carlos¹ (AUTHOR) castro.39@osu.edu

Source: Scientific Reports. 9/14/2023, Vol. 13 Issue 1, p1-10. 10p.

Subject Terms: *ARTIFICIAL neural networks, *DNA folding, *MOLECULAR structure, *NETWORK performance, *RAPID tooling

Metallic Nanowires Self-Assembled in Quasi-Circular Nanomolds Templated by DNA Origami.

Authors: Ruiz Arce, David Daniel¹ (AUTHOR) ddruiza@ens.cnyn.unam.mx, Jazavandi Ghamsari, Shima² (AUTHOR) s.jazavandi-ghamsari@hzdr.de, Erbe, Artur^2,3 (AUTHOR) a.erbe@hzdr.de, Samano, Enrique C.¹ (AUTHOR) a.erbe@hzdr.de

Source: International Journal of Molecular Sciences. Sep2023, Vol. 24 Issue 17, p13549. 15p.

Subject Terms: *DNA folding, *NANOWIRES, *DNA nanotechnology, *NANOELECTRONICS, *NANOSTRUCTURES, *CIRCULAR RNA

A versatile approach for geometry-based self-assembly of DNA–protein hybrid nanostructures using histone–DNA interactions.

Authors: Al-Zarah, Hajar¹ (AUTHOR), Serag, Maged F.¹ (AUTHOR), Alkhaldi, Faisal¹ (AUTHOR), Habuchi, Satoshi¹ (AUTHOR) satoshi.habuchi@kaust.edu.sa

Source: Chemical Communications. 1/11/2025, Vol. 61 Issue 3, p532-535. 4p.

Subject Terms: *DNA folding, *NANOSTRUCTURES, *DNA nanotechnology, *TILES

Computer Folding of Parallel DNA G‐Quadruplex: Hitchhiker's Guide to the Conformational Space.

Authors: Janeček, Michal¹ (AUTHOR), Kührová, Petra^2,3 (AUTHOR), Mlýnský, Vojtěch^2,3,4 (AUTHOR), Stadlbauer, Petr² (AUTHOR), Otyepka, Michal^2,4 (AUTHOR), Bussi, Giovanni⁵ (AUTHOR), Šponer, Jiří³ (AUTHOR), Banáš, Pavel^2,3,4 (AUTHOR) pavel.banas@upol.cz

Source: Journal of Computational Chemistry. 1/5/2025, Vol. 46 Issue 1, p1-13. 13p.

Subject Terms: *QUADRUPLEX nucleic acids, *DNA folding, *FREE surfaces, *MOLECULAR dynamics, *PARALLEL computers

Modular DNA origami-based electrochemical detection of DNA and proteins.

Authors: Byoung-jin Jeon¹, Guareschi, Matteo M.¹, Stewart, Jaimie Marie², Wu, Emily³, Gopinath, Ashwin³, Arroyo-Currás, Netzahualcóyotl⁴, Dauphin-Ducharme, Philippe⁵, Plaxco, Kevin W.⁶, Lukeman, Philip S.⁷ bjeon83@gmail.com, Rothemund, Paul W. K.¹ pwkr@dna.caltech.edu

Source: Proceedings of the National Academy of Sciences of the United States of America. 1/7/2025, Vol. 122 Issue 1, p1-18. 30p.

Subject Terms: *DNA folding, *SINGLE-stranded DNA, *DNA nanotechnology, *ELECTROCHEMICAL sensors, *GOLD electrodes, *MODULAR design