Dissecting the main factors affecting the viral abundance in a shrimp aquaculture ecosystem

Authors: Encinas-García, Trinidad, Mendoza-Cano, Fernando, De la Re-Vega, Enrique, Martínez, Joaquín Martínez, Dávila-Ramos, Sonia, Grijalva-Chon, José Manuel, Sánchez-Paz, Arturo

Source: In Regional Studies in Marine Science 15 December 2024 78

Tolerance to NSAIDs in Actinobacteria From a Mexican Volcano Crater: Genomics and Bioremediation Potential.

Authors: Soria‐Camargo, Claudia, Can‐Ubando, Lorna Catalina, Manzanares‐Leal, Gauddy Lizeth, Sánchez‐Reyes, Ayixon, Dávila‐Ramos, Sonia, Batista‐García, Ramón Alberto, Ramírez‐Durán, Ninfa

Source: Journal of Basic Microbiology; Apr2025, Vol. 65 Issue 4, p1-12, 12p

Subject Terms: EMERGING contaminants, VOLCANIC craters, MICROCOCCUS luteus, GENOMICS, AROMATIC compounds

Polyextremotolerant, opportunistic, and melanin-driven resilient black yeast Exophiala dermatitidis in environmental and clinical contexts.

Authors: de León, Lyselle Ruíz, Moreno-Perlín, Tonatiuh, Castillo-Marenco, Tania, del Rayo Sánchez-Carbente, María, Gostinčar, Cene, Ramírez-Durán, Ninfa, Ocaña, Ana María Fernández, Sánchez, Nilda C., Dávila-Ramos, Sonia, Gunde-Cimerman, Nina, Batista-García, Ramón Alberto

Source: Scientific Reports; 2/22/2025, Vol. 15 Issue 1, p1-22, 22p

Subject Terms: METABOLOMIC fingerprinting, ANTIFUNGAL agents, FUNCTIONAL genomics, POLYCYCLIC aromatic hydrocarbons, GENOMICS, MELANINS

Diversity of bacterial communities in wetlands of Calakmul Biosphere Reserve: a comparative analysis between conserved and semi-urbanized zones in pre-Mayan Train era.

Authors: García-Estrada, David Alberto, Selem-Mojica, Nelly, Martínez-Hernández, Aída, Lara-Reyna, Joel, Dávila-Ramos, Sonia, Verdel-Aranda, Karina

Source: BMC Microbiology; 9/28/2024, p1-17, 17p

Subject Terms: BIOSPHERE reserves, ANIMAL diversity, BACTERIAL communities, PLANT diversity, MICROBIAL communities

Antibacterial activity of Nocardia spp. and Streptomyces sp. on multidrug-resistant pathogens causing neonatal sepsis.

Authors: Berenice González-Nava, Janette, Lizeth Manzanares-Leal, Gauddy, Ángel Zapi-Colín, Luis, Dávila-Ramos, Sonia, Sandoval-Trujillo, Horacio, Ramírez-Durán, Ninfa

Source: Revista do Instituto de Medicina Tropical de São Paulo; 2024, Vol. 66, p1-10, 10p

Subject Terms: NEONATAL sepsis, KLEBSIELLA oxytoca, BIOTECHNOLOGY, KLEBSIELLA pneumoniae, ESCHERICHIA, ACTINOBACTERIA

Emergence of Raoultella ornithinolytica in human infections from different hospitals in Ecuador with OXA-48-producing resistance.

Authors: Villacís, José E., Castelán-Sánchez, Hugo G., Rojas-Vargas, Jorge, Rodríguez-Cruz, Ulises E., Albán, Viviana, Reyes, Jorge A., Meza-Rodríguez, Pablo M., Dávila-Ramos, Sonia, Villavicencio, Fernando, Galarza, Margarita, Gestal, Monica C.

Source: Frontiers in Microbiology; 2023, p1-13, 13p

Subject Terms: COMPARATIVE genomics, BACTERIAL chromosomes, MICROBIAL sensitivity tests, POLYMERASE chain reaction, PAN-genome, NUCLEOTIDE sequencing

Geographic Terms: ECUADOR, QUITO (Ecuador)

Evidence of natural selection and dominance of SARS-CoV-2 variant Lambda (C.37) over variants of concern in Cusco, Peru.

Authors: Quispe-Ricalde, Maria Antonieta, Castelán-Sánchez, Hugo G., Meza-Rodríguez, Pablo M., Dávila-Ramos, Sonia, Sierra, José Luis, Batista-Garcia, Ramón, Concha-Velasco, Fátima, Lucana, Sonia Flores, De Santa Cruz, José, Zea, Víctor, Galarza, Marco, Caceres-Rey, Omar, Tsukayama, Pablo, Foronda, Pilar, Soto-Chambi, Brandon Jason, Abreu, Nestor

Source: Archives of Virology; Mar2023, Vol. 168 Issue 3, p1-13, 13p

Bacterial Populations (First Record) at Two Shallow Hydrothermal Vents of the Mexican Pacific West Coast.

Authors: Dávila-Ramos, Sonia¹ (AUTHOR), Estradas-Romero, Alejandro² (AUTHOR), Prol-Ledesma, Rosa María² (AUTHOR), Juárez-López, Katy¹ (AUTHOR) katy@ibt.unam.mx

Source: Geomicrobiology Journal. 2015, Vol. 32 Issue 8, p657-665. 9p.

Subject Terms: *MARINE sediments, *SEDIMENTATION & deposition, *PHYLOGENY, *HYDROTHERMAL vents, *BIOMINERALIZATION

Transcriptomic analysis of polyaromatic hydrocarbon degradation by the halophilic fungus Aspergillus sydowii at hypersaline conditions.

Authors: Peidro‐Guzmán, Heidy, Pérez‐Llano, Yordanis, González‐Abradelo, Deborah, Fernández‐López, Maikel Gilberto, Dávila‐Ramos, Sonia, Aranda, Elisabet, Hernández, Darío Rafael Olicón, García, Angélica Ortega, Lira‐Ruan, Verónica, Pliego, Oscar Ramírez, Santana, María Angélica, Schnabel, Denhi, Jiménez‐Gómez, Irina, Mouriño‐Pérez, Rosa R., Aréchiga‐Carvajal, Elva T., del Rayo Sánchez‐Carbente, María, Folch‐Mallol, Jorge Luis, Sánchez‐Reyes, Ayixon, Vaidyanathan, Vinoth Kumar, Cabana, Hubert

Source: Environmental Microbiology; Jul2021, Vol. 23 Issue 7, p3435-3459, 25p

Subject Terms: XENOBIOTICS, PHENANTHRENE, HYDROCARBON analysis, POLYCYCLIC aromatic hydrocarbons, ASPERGILLUS, FUNGAL enzymes, BIOCONVERSION, FUNGAL remediation

Metagenomic analysis and antimicrobial activity of two fermented milk kefir samples.

Authors: Tenorio‐Salgado, Silvia, Castelán‐Sánchez, Hugo G., Dávila‐Ramos, Sonia, Huerta‐Saquero, Alejandro, Rodríguez‐Morales, Sergio, Merino‐Pérez, Enrique, Roa de la Fuente, Luis Fernando, Solis‐Pereira, Sara E., Pérez‐Rueda, Ernesto, Lizama‐Uc, Gabriel

Source: MicrobiologyOpen; Apr2021, Vol. 10 Issue 2, p1-19, 19p

A Review on Viral Metagenomics in Extreme Environments.

Authors: Dávila-Ramos, Sonia, Castelán-Sánchez, Hugo G., Martínez-Ávila, Liliana, Sánchez-Carbente, María del Rayo, Peralta, Raúl, Hernández-Mendoza, Armando, Dobson, Alan D. W., Gonzalez, Ramón A., Pastor, Nina, Batista-García, Ramón Alberto

Source: Frontiers in Microbiology; 10/18/2019, p1-19, 19p

Subject Terms: EXTREME environments, METAGENOMICS, VIRUS diversity, HABITATS, HYDROSTATIC pressure, SEAWATER, POPULARITY

Extremophile deep-sea viral communities from hydrothermal vents: Structural and functional analysis.

Authors: Castelán-Sánchez, Hugo G.¹ (AUTHOR), Lopéz-Rosas, Itzel¹ (AUTHOR), García-Suastegui, Wendy A.¹ (AUTHOR), Peralta, Raúl¹ (AUTHOR), Dobson, Alan D.W.¹ (AUTHOR), Batista-García, Ramón Alberto¹ (AUTHOR), Dávila-Ramos, Sonia¹ (AUTHOR) sonia.davila@uaem.mx

Source: Marine Genomics. Aug2019, Vol. 46, p16-28. 13p.

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The Microbial Composition in Circumneutral Thermal Springs from Chignahuapan, Puebla, Mexico Reveals the Presence of Particular Sulfur-Oxidizing Bacterial and Viral Communities.

Authors: Castelán-Sánchez, Hugo Gildardo, Meza-Rodríguez, Pablo M., Carrillo, Erika, Ríos-Vázquez, David I., Liñan-Torres, Arturo, Batista-García, Ramón Alberto, Pérez-Rueda, Ernesto, Rojas-Ruíz, Norma Elena, Dávila-Ramos, Sonia

Source: Microorganisms; Nov2020, Vol. 8 Issue 11, p1677, 1p

Subject Terms: HOT springs, BACTERIAL communities, BACTERIAL population, SULFUR cycle, CARBOHYDRATE metabolism, RHODOCOCCUS, SULFUR bacteria

Geographic Terms: MEXICO, PUEBLA (Mexico : State)

OXA-48 Carbapenemase in Klebsiella pneumoniae Sequence Type 307 in Ecuador.

Authors: Villacís, José E., Reyes, Jorge A., Castelán-Sánchez, Hugo G., Dávila-Ramos, Sonia, Lazo, Miguel Angel, Wali, Ahmad, Bodero, Luis A., Toapanta, Yadira, Naranjo, Cristina, Montero, Lorena, Campos, Josefina, Galas, Marcelo G., Gestal, Mónica C.

Source: Microorganisms; Mar2020, Vol. 8 Issue 3, p435, 1p

Subject Terms: KLEBSIELLA pneumoniae, KLEBSIELLA infections, CARBAPENEMASE, URINARY tract infections, DRUG resistance in bacteria, NOSOCOMIAL infections, MYCOPLASMA pneumoniae infections, PLASMIDS

Geographic Terms: ECUADOR

Metagenomics of Atacama Lithobiontic Extremophile Life Unveils Highlights on Fungal Communities, Biogeochemical Cycles and Carbohydrate-Active Enzymes.

Authors: Gómez-Silva, Benito, Vilo-Muñoz, Claudia, Galetović, Alexandra, Dong, Qunfeng, Castelán-Sánchez, Hugo G., Pérez-Llano, Yordanis, Sánchez-Carbente, María del Rayo, Dávila-Ramos, Sonia, Cortés-López, Nohemí Gabriela, Martínez-Ávila, Liliana, Dobson, Alan D. W., Batista-García, Ramón Alberto

Source: Microorganisms; Dec2019, Vol. 7 Issue 12, p619, 1p

Subject Terms: FUNGAL communities, EVAPORITES, METAGENOMICS, SULFUR cycle, SALT, AMYLASES, FUNGAL enzymes, BIOGEOCHEMICAL cycles

Geographic Terms: ATACAMA Desert (Chile)

Intermediate-Salinity Systems at High Altitudes in the Peruvian Andes Unveil a High Diversity and Abundance of Bacteria and Viruses.

Authors: Castelán-Sánchez, Hugo Gildardo, Elorrieta, Paola, Romoacca, Pedro, Liñan-Torres, Arturo, Sierra, José Luis, Vera, Ingrid, Batista-García, Ramón Alberto, Tenorio-Salgado, Silvia, Lizama-Uc, Gabriel, Pérez-Rueda, Ernesto, Quispe-Ricalde, María Antonieta, Dávila-Ramos, Sonia

Source: Genes; Nov2019, Vol. 10 Issue 11, p891-891, 1p

Subject Terms: BACTERIAL diversity, ARCHAEBACTERIA, VIRAL genomes, VIRUSES, ALTITUDES, BACTERIAL genomes, HALOMONAS (Bacteria)

Geographic Terms: ANDES

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