Quantum enhanced stratification of Breast Cancer: exploring quantum expressivity for real omics data

Authors: Repetto, Valeria, Ceroni, Elia Giuseppe, Buonaiuto, Giuseppe, D'Aurizio, Romina

Subject Terms: Quantum Physics, Computer Science - Machine Learning

Access URL: http://arxiv.org/abs/2409.14089

High-Throughput Identification of miRNA—Target Interactions in Melanoma Using miR-CATCHv2.0

Authors: Marranci, Andrea, D Aurizio, Romina, Rizzo, Milena, Greene, Catherine M., Poliseno, Laura

Source: Methods in molecular biology. 2265:487-514

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCRN626226450&indx=1&recIds=ETOCRN626226450

Characterization of pUL5, an HCMV protein interacting with the cellular protein IQGAP1

Authors: Anselmi, Giulia, Giuliani, Maria, Vezzani, Giacomo, Ferranti, Rossella, Gentile, Michela, Cortese, Mirko, Amendola, Diego, Pacchiani, Nicola, D'Aurizio, Romina, Bruno, Luca, Uematsu, Yasushi, Merola, Marcello, Maione, Domenico

Source: In Virology 15 January 2020 540:57-65

Bridging between Mouse and Human Enhancer-Promoter Long-Range Interactions in Neural Stem Cells, to Understand Enhancer Function in Neurodevelopmental Disease.

Authors: D'Aurizio, Romina¹ (AUTHOR) orazio.catona@gmail.com, Catona, Orazio¹ (AUTHOR), Pitasi, Mattia² (AUTHOR) m.pitasi@campus.unimib.it, Li, Yang Eric³ (AUTHOR) yal054@health.ucsd.edu, Ren, Bing³ (AUTHOR) biren@health.ucsd.edu, Nicolis, Silvia Kirsten² (AUTHOR) silvia.nicolis@unimib.it

Source: International Journal of Molecular Sciences. Jul2022, Vol. 23 Issue 14, p7964-7964. 29p.

Subject Terms: *DNA copy number variations, *GENOME-wide association studies, *GENETIC variation, *NEURAL stem cells, *SINGLE nucleotide polymorphisms, *HUMAN genome

Systematic evaluation of the microRNAome through miR-CATCHv2.0 identifies positive and negative regulators of BRAF-X1 mRNA

Authors: Marranci, Andrea, D'Aurizio, Romina, Vencken, Sebastian, Mero, Serena, Guzzolino, Elena, Rizzo, Milena, Pitto, Letizia, Pellegrini, Marco, Chiorino, Giovanna, Greene, Catherine M., Poliseno, Laura

Source: RNA biology. 16(7):865-878

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100081987362.0x000001&indx=1&recIds=ETOCvdc_100081987362.0x000001

Nanopore sequencing data analysis: state of the art, applications and challenges

Authors: Magi, Alberto, Semeraro, Roberto, Mingrino, Alessandra, Giusti, Betti, D Aurizio, Romina

Source: Briefings in bioinformatics. 19(6):1256-1272

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCRN620629893&indx=1&recIds=ETOCRN620629893

Integrative analysis of differentially expressed genes and miRNAs predicts complex T3-mediated protective circuits in a rat model of cardiac ischemia reperfusion

Authors: Forini, Francesca, Nicolini, Giuseppina, Kusmic, Claudia, D'Aurizio, Romina, Rizzo, Milena, Baumgart, Mario, Groth, Marco, Doccini, Stefano, Iervasi, Giorgio, Pitto, Letizia

Source: Scientific reports. 8(1):1-16

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100182722927.0x000001&indx=1&recIds=ETOCvdc_100182722927.0x000001

Nanopore sequencing data analysis: state of the art, applications and challenges

Authors: Magi, Alberto, Semeraro, Roberto, Mingrino, Alessandra, Giusti, Betti, D'Aurizio, Romina

Source: Briefings in bioinformatics. 19(6):1256-1272

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100078385874.0x000001&indx=1&recIds=ETOCvdc_100078385874.0x000001

Secreted miR-210-3p, miR-183-5p and miR-96-5p reduce sensitivity to docetaxel in prostate cancer cells.

Authors: Canovai, Maristella, Evangelista, Monica, Mercatanti, Alberto, D’Aurizio, Romina, Pitto, Letizia, Marrocolo, Francesca, Casieri, Valentina, Pellegrini, Marco, Lionetti, Vincenzo, Bracarda, Sergio, Rizzo, Milena

Source: Cell Death Discovery; 12/8/2023, Vol. 9 Issue 1, p1-13, 13p

Slowly progressive autosomal dominant Alport Syndrome due to COL4A3splicing variant

Authors: Daga, Sergio, Loberti, Lorenzo, Rollo, Giulia, Adamo, Loredaria, Colavecchio, Olga Lorenza, Brunelli, Giulia, Zguro, Kristina, Tripodi, Sergio Antonio, Guarnieri, Andrea, Garosi, Guido, D’Aurizio, Romina, Ariani, Francesca, Tita, Rossella, Renieri, Alessandra, Pinto, Anna Maria

Source: European Journal of Human Genetics: EJHG; 20240101, Issue: Preprints p1-7, 7p

NRF2 activation by cysteine as a survival mechanism for triple-negative breast cancer cells

Authors: Bottoni, Laura, Minetti, Alberto, Realini, Giulia, Pio, Elena, Giustarini, Daniela, Rossi, Ranieri, Rocchio, Chiara, Franci, Lorenzo, Salvini, Laura, Catona, Orazio, D’Aurizio, Romina, Rasa, Mahdi, Giurisato, Emanuele, Neri, Francesco, Orlandini, Maurizio, Chiariello, Mario, Galvagni, Federico

Source: Oncogene; 20240101, Issue: Preprints p1-13, 13p

Variations of circulating miRNA in paediatric patients with Heart Failure supported with Ventricular Assist Device: a pilot study

Authors: Ragusa, Rosetta, Di Molfetta, Arianna, D'Aurizio, Romina, Del Turco, Serena, Cabiati, Manuela, Del Ry, Silvia, Basta, Giuseppina, Pitto, Letizia, Amodeo, Antonio, Trivella, Maria Giovanna, Rizzo, Milena, Caselli, Chiara

Source: Scientific reports. 10(1)

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100174710499.0x000001&indx=1&recIds=ETOCvdc_100174710499.0x000001

Surfome Analysis as a Fast Track to Vaccine Discovery: IDENTIFICATION OF A NOVEL PROTECTIVE ANTIGEN FOR GROUP B STREPTOCOCCUS HYPERVIRULENT STRAIN COH1

Authors: Doro, Francesco, Liberatori, Sabrina, Rodríguez-Ortega, Manuel J. ^‡, Rinaudo, Cira D., Rosini, Roberto, Mora, Marirosa, Scarselli, Maria, Altindis, Emrah, D'Aurizio, Romina, Stella, Maria, Margarit, Immaculada, Maione, Domenico, Telford, John L., Norais, Nathalie, Grandi, Guido ^§

Source: In Molecular & Cellular Proteomics July 2009 8(7):1728-1737

Hooked Up from a Distance: Charting Genome-Wide Long-Range Interaction Maps in Neural Cells Chromatin to Identify Novel Candidate Genes for Neurodevelopmental Disorders.

Authors: Mercurio, Sara, Pozzolini, Giorgia, Baldi, Roberta, Barilà, Sara E., Pitasi, Mattia, Catona, Orazio, D'Aurizio, Romina, Nicolis, Silvia K.

Source: International Journal of Molecular Sciences; Jan2023, Vol. 24 Issue 2, p1164, 13p

Subject Terms: DNA copy number variations, SINGLE nucleotide polymorphisms, GENE enhancers, NUCLEOTIDE sequence, CHROMATIN, GENES, GENE regulatory networks

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Artificial Intelligence Predictive Models of Response to Cytotoxic Chemotherapy Alone or Combined to Targeted Therapy for Metastatic Colorectal Cancer Patients: A Systematic Review and Meta-Analysis.

Authors: Russo, Valentina, Lallo, Eleonora, Munnia, Armelle, Spedicato, Miriana, Messerini, Luca, D'Aurizio, Romina, Ceroni, Elia Giuseppe, Brunelli, Giulia, Galvano, Antonio, Russo, Antonio, Landini, Ida, Nobili, Stefania, Ceppi, Marcello, Bruzzone, Marco, Cianchi, Fabio, Staderini, Fabio, Roselli, Mario, Riondino, Silvia, Ferroni, Patrizia, Guadagni, Fiorella

Source: Cancers; Aug2022, Vol. 14 Issue 16, p4012, 38p

Subject Terms: CONFIDENCE intervals, META-analysis, CANCER chemotherapy, SYSTEMATIC reviews, METASTASIS, ARTIFICIAL intelligence, COLORECTAL cancer, LEARNING strategies, DESCRIPTIVE statistics, PREDICTION models, DECISION making in clinical medicine, MEDLINE, RECEIVER operating characteristic curves, SENSITIVITY & specificity (Statistics), CYTOTOXINS

In-silico prediction and deep-DNA sequencing validation indicate phase variation in 115 Neisseria meningitidis genes.

Authors: Siena, Emilio¹ emilio.x.siena@gsk.com, D'Aurizio, Romina^1,2, Riley, David^3,4, Tettelin, Hervé³, Guidotti, Silvia¹, Torricelli, Giulia¹, Moxon, E. Richard⁵, Medini, Duccio¹ duccio.x.medini@gsk.com

Source: BMC Genomics. 10/28/2016, Vol. 17, p1-13. 13p. 1 Diagram, 3 Graphs.

Subject Terms: *NEISSERIA meningitidis, *NUCLEOTIDE sequencing, *COMPARATIVE genomics, *HOST-parasite relationships, *CELL membranes, *PHENOTYPES

Characterization and identification of hidden rare variants in the human genome.

Authors: Magi, Alberto¹ albertomagi@gmail.com, D'Aurizio, Romina², Palombo, Flavia³, Cifola, Ingrid⁴, Tattini, Lorenzo⁵, Semeraro, Roberto¹, Pippucci, Tommaso³, Giusti, Betti¹, Romeo, Giovanni³, Abbate, Rosanna¹, Gensini, Gian Franco¹

Source: BMC Genomics. 2015, Vol. 16 Issue 1, p1-16. 16p. 2 Diagrams, 3 Charts, 1 Graph.

Subject Terms: *HUMAN genetic variation, *HUMAN genome, *GENOTYPES, *MENDEL'S law, *GERM cells

The creation and selection of mutations resistant to a gene drive over multiple generations in the malaria mosquito.

Authors: Hammond, Andrew M.¹, Kyrou, Kyros¹, Bruttini, Marco², North, Ace³, Galizi, Roberto¹, Karlsson, Xenia¹, Kranjc, Nace¹, Carpi, Francesco M.¹, D’Aurizio, Romina⁴, Crisanti, Andrea¹, acrs@imperial.ac.uk, Nolan, Tony¹, t.nolan@imperial.ac.uk

Source: PLoS Genetics; 10/04/2017, Vol. 13 Issue 10, p1-16, 16p

Protocol to analyze circulating small non-coding RNAs by high-throughput RNA sequencing from human plasma samples

Authors: Grieco, Giuseppina E., Sebastiani, Guido, Fignani, Daniela, Brusco, Noemi, Nigi, Laura, Formichi, Caterina, Licata, Giada, Bruttini, Marco, D’Aurizio, Romina, Mathieu, Chantal, Gysemans, Conny, Dotta, Francesco

Source: In STAR Protocols 17 September 2021 2(3)