Identifying Functional Brain Networks of Spatiotemporal Wide-Field Calcium Imaging Data via a Long Short-Term Memory Autoencoder

Authors: Zhang, Xiaohui, Landsness, Eric C, Brier, Lindsey M, Chen, Wei, Tang, Michelle J., Miao, Hanyang, Lee, Jin-Moo, Anastasio, Mark A., Culver, Joseph P.

Subject Terms: Electrical Engineering and Systems Science - Image and Video Processing

Access URL: http://arxiv.org/abs/2405.19685

Attention-based CNN-BiLSTM for sleep state classification of spatiotemporal wide-field calcium imaging data

Authors: Zhang, Xiaohui, Landsness, Eric C., Miao, Hanyang, Chen, Wei, Tang, Michelle J., Brier, Lindsey M., Culver, Joseph P., Lee, Jin-Moo, Anastasio, Mark A.

Source: In Journal of Neuroscience Methods November 2024 411

Mapping cortical activations underlying covert and overt language production using high-density diffuse optical tomography

Authors: Schroeder, Mariel L., Sherafati, Arefeh, Ulbrich, Rachel L., Wheelock, Muriah D., Svoboda, Alexandra M., Klein, Emma D., George, Tessa G., Tripathy, Kalyan, Culver, Joseph P., Eggebrecht, Adam T.

Source: In NeuroImage 1 August 2023 276

Optical imaging of functional connectivity at the bedside

Authors: Culver, Joseph P., Bergonzi, Karla M., Eggebrecht, Adam E., Fishell, Andrew K., Lee, Jin-Moo

Source: 2016 38th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC) Engineering in Medicine and Biology Society (EMBC), 2016 IEEE 38th Annual International Conference of the. :65-67 Aug, 2016

Relation: 2016 38th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC)

High density speckle contrast optical tomography system for in vivo imaging of deep tissue blood flow
Diffuse Optical Spectroscopy and Imaging IX

Authors: Beslija, Faruk, Kobayashi Frisk, Lisa, Verma, Manish, Lin, Chen-Hao P., Patil, Nishigandha, Chetia, Sumana, Trobaugh, Jason W., Culver, Joseph P., Durduran, Turgut

Source: Proceedings of SPIE, the International Society for Optical Engineering. 12628:126280X-126280X-3

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCCN900069894&indx=1&recIds=ETOCCN900069894

Scalp-based parcellation for longitudinal fNIRS studies
Diffuse Optical Spectroscopy and Imaging IX

Authors: Magee, Abigail L., Pirazzoli, Laura, Sanchez-Alonso, Sara, Sullivan, Eileen F., Perdue, Katherine L., Zinszer, Benjamin, Bejjanki, Vikranth R., Richards, John E., Culver, Joseph P., Aslin, Richard N.

Source: Proceedings of SPIE, the International Society for Optical Engineering. 12628:126280K-126280K-3

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCCN900069887&indx=1&recIds=ETOCCN900069887

Attention-based CNN-BiLSTM for sleep state classification of spatiotemporal wide-field calcium imaging data
Neural Imaging and Sensing 2023

Authors: Zhang, Xiaohui, Landsness, Eric C., Culver, Joseph P., Lee, Jin-Moo, Anastasio, Mark A.

Source: Proceedings of SPIE, the International Society for Optical Engineering. 12365:123650B-123650B-4

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCCN900059934&indx=1&recIds=ETOCCN900059934

Fundamental effects of array density and modulation frequency on image quality of diffuse optical tomography.

Authors: Fan, Weihao, Trobaugh, Jason W., Zhang, Chengfeng, Yang, Dalin, Culver, Joseph P., Eggebrecht, Adam T.

Source: Medical Physics; Feb2025, Vol. 52 Issue 2, p1045-1057, 13p

Subject Terms: IMAGE quality analysis, SPATIAL resolution, SIGNAL-to-noise ratio, SYSTEMS design, ELECTRONIC modulation, IMAGING systems in biology, OPTICAL tomography

Ultra high density imaging arrays in diffuse optical tomography for human brain mapping improve image quality and decoding performance.

Authors: Markow, Zachary E., Trobaugh, Jason W., Richter, Edward J., Tripathy, Kalyan, Rafferty, Sean M., Svoboda, Alexandra M., Schroeder, Mariel L., Burns-Yocum, Tracy M., Bergonzi, Karla M., Chevillet, Mark A., Mugler, Emily M., Eggebrecht, Adam T., Culver, Joseph P.

Source: Scientific Reports; 1/25/2025, Vol. 15 Issue 1, p1-16, 16p

Subject Terms: DIAGNOSTIC imaging, OPTICAL tomography, BRAIN tomography, PHYSICAL sciences, OXYGEN in the blood, FUNCTIONAL magnetic resonance imaging, NEAR infrared spectroscopy

Automated sleep state classification of wide-field calcium imaging data via multiplex visibility graphs and deep learning

Authors: Zhang, Xiaohui, Landsness, Eric C., Chen, Wei, Miao, Hanyang, Tang, Michelle, Brier, Lindsey M., Culver, Joseph P., Lee, Jin-Moo, Anastasio, Mark A.

Source: In Journal of Neuroscience Methods 15 January 2022 366

Peripheral sensory stimulation elicits global slow waves by recruiting somatosensory cortex bilaterally

Authors: Rosenthal, Zachary P., Raut, Ryan V., Bowen, Ryan M., Snyder, Abraham Z., Culver, Joseph P., Raichle, Marcus E., Lee, Jin-Moo

Source: Proceedings of the National Academy of Sciences of the United States of America, 2021 Feb . 118(8), 1-9.

Access URL: https://www.jstor.org/stable/27006376

Sonothermogenetics for noninvasive and cell-type specific deep brain neuromodulation

Authors: Yang, Yaoheng, Pacia, Christopher Pham, Ye, Dezhuang, Zhu, Lifei, Baek, Hongchae, Yue, Yimei, Yuan, Jinyun, Miller, Mark J., Cui, Jianmin, Culver, Joseph P., Bruchas, Michael R., Chen, Hong

Source: In Brain Stimulation July-August 2021 14(4):790-800

Decoding visual information from high-density diffuse optical tomography neuroimaging data

Authors: Tripathy, Kalyan, Markow, Zachary E., Fishell, Andrew K., Sherafati, Arefeh, Burns-Yocum, Tracy M., Schroeder, Mariel L., Svoboda, Alexandra M., Eggebrecht, Adam T., Anastasio, Mark A., Schlaggar, Bradley L., Culver, Joseph P.

Source: In NeuroImage 1 February 2021 226

Endothelial ether lipids link the vasculature to blood pressure, behavior, and neurodegeneration

Authors: Spears, Larry D., Adak, Sangeeta, Dong, Guifang, Wei, Xiaochao, Spyropoulos, George, Zhang, Qiang, Yin, Li, Feng, Chu, Hu, Donghua, Lodhi, Irfan J., Hsu, Fong-Fu, Rajagopal, Rithwick, Noguchi, Kevin K., Halabi, Carmen M., Brier, Lindsey, Bice, Annie R., Lananna, Brian V., Musiek, Erik S., Avraham, Oshri, Cavalli, Valeria, Holth, Jerrah K., Holtzman, David M., Wozniak, David F., Culver, Joseph P., Semenkovich, Clay F.

Source: In Journal of Lipid Research 2021 62

Functional Connectivity of the Developing Mouse Cortex

Authors: Rahn, Rachel M, Brier, Lindsey M, Bice, Annie R, Reisman, Matthew D, Dougherty, Joseph D, Culver, Joseph P

Source: Cerebral cortex. 32(8):1755-1768

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100148517091.0x000001&indx=1&recIds=ETOCvdc_100148517091.0x000001

A Multivariate Functional Connectivity Approach to Mapping Brain Networks and Imputing Neural Activity in Mice

Authors: Brier, Lindsey M, Zhang, Xiaohui, Bice, Annie R, Gaines, Seana H, Landsness, Eric C, Lee, Jin-Moo, Anastasio, Mark A, Culver, Joseph P

Source: Cerebral cortex. 32(8):1593-1607

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100148516989.0x000001&indx=1&recIds=ETOCvdc_100148516989.0x000001

Photometry for scalp morphology estimation for optical functional neuroimaging
Neural Imaging and Sensing 2022

Authors: Magee, Abigail L., Svoboda, Calamity, Agato, Alvin S., Richter, Ed, Culver, Joseph P., Eggebrecht, Adam T.

Source: Proceedings of SPIE, the International Society for Optical Engineering. 11946:1194604-1194604-5

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCCN900042563&indx=1&recIds=ETOCCN900042563

Bedside Neuroimaging Using High-Density Diffuse Optical Tomography in a Pediatric Patient on Extracorporeal Support.

Authors: McMorrow, Sophia R., Park, Sung Min, George, Tessa G., Sobolewski, Chloe M., Yang, Dalin, King, Kelsey T., Kenley, Jeanette, Smyser, Christopher D., Culver, Joseph P., Guilliams, Kristin P., Said, Ahmed S., Eggebrecht, Adam T.

Source: Stroke (00392499); Jan2025, Vol. 56 Issue 1, pe3-e5, 3p

Mapping the human brain at rest with diffuse optical tomography

Authors: White, Brian R., Snyder, Abraham Z., Cohen, Alexander L., Petersen, Steven E., Raichle, Marcus E., Schlaggar, Bradley L., Culver, Joseph P.

Source: 2009 Annual International Conference of the IEEE Engineering in Medicine and Biology Society Engineering in Medicine and Biology Society, 2009. EMBC 2009. Annual International Conference of the IEEE. :4070-4072 Sep, 2009

Relation: 2009 31st Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC)

Multimodal optical-nuclear molecular imaging of tumors

Authors: Achilefu, Samuel, Akers, Walter, Edwards, W. Barry, Yunpeng Ye, Zhang, Zongren, Cheney, Philip, Bloch, Sharon, Baogang Xu, Berezin, Mikhail, Tai Yuan-Chuan, Culver, Joseph P.

Source: LEOS 2008 - 21st Annual Meeting of the IEEE Lasers and Electro-Optics Society Lasers and Electro-Optics Society, 2008. LEOS 2008. 21st Annual Meeting of the IEEE. :31-32 Nov, 2008

Relation: LEOS 2008 - 21st Annual Meeting of the IEEE Lasers and Electro-Optics Society (LEOS 2008)