Same data, different analysts: variation in effect sizes due to analytical decisions in ecology and evolutionary biology

Authors: Elliot Gould, Hannah S. Fraser, Timothy H. Parker, Shinichi Nakagawa, Simon C. Griffith, Peter A. Vesk, Fiona Fidler, Daniel G. Hamilton, Robin N. Abbey-Lee, Jessica K. Abbott, Luis A. Aguirre, Carles Alcaraz, Irith Aloni, Drew Altschul, Kunal Arekar, Jeff W. Atkins, Joe Atkinson, Christopher M. Baker, Meghan Barrett, Kristian Bell, Suleiman Kehinde Bello, Iván Beltrán, Bernd J. Berauer, Michael Grant Bertram, Peter D. Billman, Charlie K. Blake, Shannon Blake, Louis Bliard, Andrea Bonisoli-Alquati, Timothée Bonnet, Camille Nina Marion Bordes, Aneesh P. H. Bose, Thomas Botterill-James, Melissa Anna Boyd, Sarah A. Boyle, Tom Bradfer-Lawrence, Jennifer Bradham, Jack A. Brand, Martin I. Brengdahl, Martin Bulla, Luc Bussière, Ettore Camerlenghi, Sara E. Campbell, Leonardo L. F. Campos, Anthony Caravaggi, Pedro Cardoso, Charles J. W. Carroll, Therese A. Catanach, Xuan Chen, Heung Ying Janet Chik, Emily Sarah Choy, Alec Philip Christie, Angela Chuang, Amanda J. Chunco, Bethany L. Clark, Andrea Contina, Garth A. Covernton, Murray P. Cox, Kimberly A. Cressman, Marco Crotti, Connor Davidson Crouch, Pietro B. D’Amelio, Alexandra Allison de Sousa, Timm Fabian Döbert, Ralph Dobler, Adam J. Dobson, Tim S. Doherty, Szymon Marian Drobniak, Alexandra Grace Duffy, Alison B. Duncan, Robert P. Dunn, Jamie Dunning, Trishna Dutta, Luke Eberhart-Hertel, Jared Alan Elmore, Mahmoud Medhat Elsherif, Holly M. English, David C. Ensminger, Ulrich Rainer Ernst, Stephen M. Ferguson, Esteban Fernandez-Juricic, Thalita Ferreira-Arruda, John Fieberg, Elizabeth A. Finch, Evan A. Fiorenza, David N. Fisher, Amélie Fontaine, Wolfgang Forstmeier, Yoan Fourcade, Graham S. Frank, Cathryn A. Freund, Eduardo Fuentes-Lillo, Sara L. Gandy, Dustin G. Gannon, Ana I. García-Cervigón, Alexis C. Garretson, Xuezhen Ge, William L. Geary, Charly Géron, Marc Gilles, Antje Girndt, Daniel Gliksman, Harrison B. Goldspiel, Dylan G. E. Gomes, Megan Kate Good, Sarah C. Goslee, J. Stephen Gosnell, Eliza M. Grames, Paolo Gratton, Nicholas M. Grebe, Skye M. Greenler, Maaike Griffioen, Daniel M. Griffith, Frances J. Griffith, Jake J. Grossman, Ali Güncan, Stef Haesen, James G. Hagan, Heather A. Hager, Jonathan Philo Harris, Natasha Dean Harrison, Sarah Syedia Hasnain, Justin Chase Havird, Andrew J. Heaton, María Laura Herrera-Chaustre, Tanner J. Howard, Bin-Yan Hsu, Fabiola Iannarilli, Esperanza C. Iranzo, Erik N. K. Iverson, Saheed Olaide Jimoh, Douglas H. Johnson, Martin Johnsson, Jesse Jorna, Tommaso Jucker, Martin Jung, Ineta Kačergytė, Oliver Kaltz, Alison Ke, Clint D. Kelly, Katharine Keogan, Friedrich Wolfgang Keppeler, Alexander K. Killion, Dongmin Kim, David P. Kochan, Peter Korsten, Shan Kothari, Jonas Kuppler, Jillian M. Kusch, Malgorzata Lagisz, Kristen Marianne Lalla, Daniel J. Larkin, Courtney L. Larson, Katherine S. Lauck, M. Elise Lauterbur, Alan Law, Don-Jean Léandri-Breton, Jonas J. Lembrechts, Kiara L’Herpiniere, Eva J. P. Lievens, Daniela Oliveira de Lima, Shane Lindsay, Martin Luquet, Ross MacLeod, Kirsty H. Macphie, Kit Magellan, Magdalena M. Mair, Lisa E. Malm, Stefano Mammola, Caitlin P. Mandeville, Michael Manhart, Laura Milena Manrique-Garzon, Elina Mäntylä, Philippe Marchand, Benjamin Michael Marshall, Charles A. Martin, Dominic Andreas Martin, Jake Mitchell Martin, April Robin Martinig, Erin S. McCallum, Mark McCauley, Sabrina M. McNew, Scott J. Meiners, Thomas Merkling, Marcus Michelangeli, Maria Moiron, Bruno Moreira, Jennifer Mortensen, Benjamin Mos, Taofeek Olatunbosun Muraina, Penelope Wrenn Murphy, Luca Nelli, Petri Niemelä, Josh Nightingale, Gustav Nilsonne, Sergio Nolazco, Sabine S. Nooten, Jessie Lanterman Novotny, Agnes Birgitta Olin, Chris L. Organ, Kate L. Ostevik, Facundo Xavier Palacio, Matthieu Paquet, Darren James Parker, David J. Pascall, Valerie J. Pasquarella, John Harold Paterson, Ana Payo-Payo, Karen Marie Pedersen, Grégoire Perez, Kayla I. Perry, Patrice Pottier, Michael J. Proulx, Raphaël Proulx, Jessica L Pruett, Veronarindra Ramananjato, Finaritra Tolotra Randimbiarison, Onja H. Razafindratsima, Diana J. Rennison, Federico Riva, Sepand Riyahi, Michael James Roast, Felipe Pereira Rocha, Dominique G. Roche, Cristian Román-Palacios, Michael S. Rosenberg, Jessica Ross, Freya E. Rowland, Deusdedith Rugemalila, Avery L. Russell, Suvi Ruuskanen, Patrick Saccone, Asaf Sadeh, Stephen M. Salazar, Kris Sales, Pablo Salmón, Alfredo Sánchez-Tójar, Leticia Pereira Santos, Francesca Santostefano, Hayden T. Schilling, Marcus Schmidt, Tim Schmoll, Adam C. Schneider, Allie E. Schrock, Julia Schroeder, Nicolas Schtickzelle, Nick L. Schultz, Drew A. Scott, Michael Peter Scroggie, Julie Teresa Shapiro, Nitika Sharma, Caroline L. Shearer, Diego Simón, Michael I. Sitvarin, Fabrício Luiz Skupien, Heather Lea Slinn, Grania Polly Smith, Jeremy A. Smith, Rahel Sollmann, Kaitlin Stack Whitney, Shannon Michael Still, Erica F. Stuber, Guy F. Sutton, Ben Swallow, Conor Claverie Taff, Elina Takola, Andrew J. Tanentzap, Rocío Tarjuelo, Richard J. Telford, Christopher J. Thawley, Hugo Thierry, Jacqueline Thomson, Svenja Tidau, Emily M. Tompkins, Claire Marie Tortorelli, Andrew Trlica, Biz R. Turnell, Lara Urban, Stijn Van de Vondel, Jessica Eva Megan van der Wal, Jens Van Eeckhoven, Francis van Oordt, K. Michelle Vanderwel, Mark C. Vanderwel, Karen J. Vanderwolf, Juliana Vélez, Diana Carolina Vergara-Florez, Brian C. Verrelli, Marcus Vinícius Vieira, Nora Villamil, Valerio Vitali, Julien Vollering, Jeffrey Walker, Xanthe J. Walker, Jonathan A. Walter, Pawel Waryszak, Ryan J. Weaver, Ronja E. M. Wedegärtner, Daniel L. Weller, Shannon Whelan, Rachel Louise White, David William Wolfson, Andrew Wood, Scott W. Yanco, Jian D. L. Yen, Casey Youngflesh, Giacomo Zilio, Cédric Zimmer, Gregory Mark Zimmerman, Rachel A. Zitomer

Source: BMC Biology, Vol 23, Iss 1, Pp 1-36 (2025)

Subject Terms: Analytical heterogeneity, Metascience, Many-analyst, Replication crisis, Reproducibility, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://doaj.org/toc/1741-7007

Access URL: https://doaj.org/article/de5863fbbfd4411f8ee09e352a483284

Online toolkits for collaborative and inclusive global research in urban evolutionary ecology

Authors: Amy M. Savage, Meredith J. Willmott, Pablo Moreno‐García, Zuzanna Jagiello, Daijiang Li, Anna Malesis, Lindsay S. Miles, Cristian Román‐Palacios, David Salazar‐Valenzuela, Brian C. Verrelli, Kristin M. Winchell, Marina Alberti, Santiago Bonilla‐Bedoya, Elizabeth Carlen, Cleo Falvey, Lauren Johnson, Ella Martin, Hanna Kuzyo, John Marzluff, Jason Munshi‐South, Megan Phifer‐Rixey, Ignacy Stadnicki, Marta Szulkin, Yuyu Zhou, Kiyoko M. Gotanda

Source: Ecology and Evolution, Vol 14, Iss 6, Pp n/a-n/a (2024)

Subject Terms: collaborations, decolonization, eco‐evolutionary dynamics, international, science communication, urban ecology, Ecology, QH540-549.5

File Description: electronic resource

Relation: https://doaj.org/toc/2045-7758

Access URL: https://doaj.org/article/9c72c601c99f4aef8a5b37aea1d468ae

The phruta r package: Increasing access, reproducibility and transparency in phylogenetic analyses

Authors: Cristian Román‐Palacios

Source: Methods in Ecology and Evolution, Vol 14, Iss 9, Pp 2284-2299 (2023)

Subject Terms: Filogenética, Flujo de trabajo, Paquete de R, Reproducibilidad, Ecology, QH540-549.5, Evolution, QH359-425

File Description: electronic resource

Relation: https://doaj.org/toc/2041-210X

Access URL: https://doaj.org/article/a6ae42a0b13e49099dccf791b5042e2c

Physiological cold tolerance evolves faster than climatic niches in plants

Authors: Yin Wen, Qing Ye, Cristian Román-Palacios, Hui Liu, Guilin Wu

Source: Frontiers in Plant Science, Vol 14 (2023)

Subject Terms: physiological tolerance, climatic niche, climate change, evolution, heat tolerance, Plant culture, SB1-1110

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fpls.2023.1257499/full; https://doaj.org/toc/1664-462X

Access URL: https://doaj.org/article/66ef452896c644f4b94a629ba0fdd623

Evolution of diet across the animal tree of life

Authors: Cristian Román‐Palacios, Joshua P. Scholl, John J. Wiens

Source: Evolution Letters, Vol 3, Iss 4, Pp 339-347 (2019)

Subject Terms: Animal, diet, diversification, evolution, niche conservatism, phylogeny, Evolution, QH359-425

File Description: electronic resource

Relation: https://doaj.org/toc/2056-3744

Access URL: https://doaj.org/article/430a87d4cd77434bb91438642e987e0b

Patterns of Element Incorporation in Calcium Carbonate Biominerals Recapitulate Phylogeny for a Diverse Range of Marine Calcifiers

Authors: Robert N. Ulrich, Maxence Guillermic, Julia Campbell, Abbas Hakim, Rachel Han, Shayleen Singh, Justin D. Stewart, Cristian Román-Palacios, Hannah M. Carroll, Ilian De Corte, Rosaleen E. Gilmore, Whitney Doss, Aradhna Tripati, Justin B. Ries, Robert A. Eagle

Source: Frontiers in Earth Science, Vol 9 (2021)

Subject Terms: marine calcification, calcite, aragonite, trace elements, ocean acidification, biomineralization, Science

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/feart.2021.641760/full; https://doaj.org/toc/2296-6463

Access URL: https://doaj.org/article/b98ace8f94c14a4788c6eaaa2eefa13c

Volumen 18 Número 1

Authors: Teresita Betancur-Vargas, Daniel Alejandro García-Giraldo, Angélica Julieth Vélez-Duque, Angélica María Gómez, Carlos Flórez-Ayala, Jorge E. Patiño, Juan Álvaro Ortíz-Tamayo, Selwin Pérez-Nasser, Mónica Tatiana López Muñoz, Carlos Eduardo De Mattos Bicudo, Ricardo O. Echenique, John Jairo Ramírez-Restrepo, Jaime A. Palacio, Luis Javier Romero-Puentes, Brayan Leandro Torres-Clavijo, Ángela Parrado-Rosselli, Laguandio del Cristo Banda-Sánchez, Yeison Herney Pinzón-Ariza, Luis Eduardo Vanegas-Martínez, Hamleth Valois-Cuesta, Carolina Martínez-Ruiz, Humberto Mendoza-Cifuentes, Brightdoom Márquez-Rojas, Evelyn Zoppi de Roa, Luis Troccoli, Edy Montiel, Fredy Molano-Rendón, Irina Morales, Efraín Reinel Henao-Bañol, Fabian G. Gaviria, Julián A. Salazar-Escobar, Catalina Romero-Ortiz, Ada Acevedo, Carlos A. Lasso, César Román-Valencia, Donald C. Taphorn, Carlos. A. García-Alzate, Sebastián Vásquez-P., Raquel I. Ruiz-C., Alberto Moncayo-Fernández, Ofelia Mejía-Egas, Héctor E. Ramírez-Chaves, Cristian Román-Palacios, Sara Fernández-Garzón, Alejandro Valencia-Zuleta, Andrés Felipe Jaramillo-Martínez, Ronald Andrés Viáfara-Vega, Andrés R. Acosta-Galvis, Jaime De La Ossa-V., Merly Ardila-Marulanda, Alejandro De La Ossa-Lacayo, Silvia Galván-Guevara, Franger J. García, Mariana Isabel Delgado-Jaramillo, Marjorie Machado, Wilmar Bolívar-García, Alan Giraldo, Ángela M. González-Colorado, Lina M. Mesa S., Juan Gabriel Albornoz, Mauricio Torres, Egna Mantilla-Barbosa, Federico Rangel-Serpa

Source: Biota Colombiana, Vol 18, Iss 1, Pp 1-390 (2017)

Subject Terms: Biology (General), QH301-705.5

File Description: electronic resource

Relation: http://revistas.humboldt.org.co/index.php/biota/article/view/477; https://doaj.org/toc/0124-5376; https://doaj.org/toc/2539-200X

Access URL: https://doaj.org/article/35645ce7277643b493a1f4f7f9432b72

Lista anotada de la herpetofauna del departamento del Quindío, Colombia

Authors: Cristian Román-Palacios, Sara Fernández-Garzón, Alejandro Valencia-Zuleta, Andrés Felipe Jaramillo-Martínez, Ronald Andrés Viáfara-Vega

Source: Biota Colombiana, Vol 18, Iss 1, Pp 251-281 (2017)

Subject Terms: Anfibios, Cordillera Central, Conservación, Reptiles, Riqueza, Biology (General), QH301-705.5

File Description: electronic resource

Relation: http://revistas.humboldt.org.co/index.php/biota/article/view/468; https://doaj.org/toc/0124-5376; https://doaj.org/toc/2539-200X

Access URL: https://doaj.org/article/cd24bc8bb02f4a74a2d5c547f915c040

Historical biogeography of Thyrsophorini psocids and description of a new neotropical species of Thyrsopsocopsis (Psocodea: Psocomorpha: Psocidae)

Authors: Cristian Román-Palacios, Alfonso N. García Aldrete, Ranulfo González Obando

Source: European Journal of Taxonomy, Vol 0, Iss 194 (2016)

Subject Terms: Historical biogeography, Psocids, dispersal, vicariance, parallelism, Zoology, QL1-991, Botany, QK1-989

File Description: electronic resource

Relation: http://www.europeanjournaloftaxonomy.eu/index.php/ejt/article/view/316; https://doaj.org/toc/2118-9773

Access URL: https://doaj.org/article/46b7f735f1254ab69643a29d34f61f53

treedata.table: a wrapper for data.table that enables fast manipulation of large phylogenetic trees matched to data

Authors: Cristian Román Palacios, April Wright, Josef Uyeda

Source: PeerJ, Vol 9, p e12450 (2021)

Subject Terms: Data.table, Evolution, Phylogenetics, Phylogenetic comparative analyses, R Package, Medicine, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://peerj.com/articles/12450.pdf; https://peerj.com/articles/12450/; https://doaj.org/toc/2167-8359

Access URL: https://doaj.org/article/1bd79dbac9e3433787b7c09cd9667897