A novel germline variant in PIK3R1 results in SHORT syndrome associated with TAL/LMO T‐cell acute lymphoblastic leukemia

Authors: Marzollo, Antonio, Maestrini, Giacomo, La Starza, Roberta, Elia, Loredana, Malfona, Francesco, Pierini, Tiziana, Tretti Parenzan, Caterina, Coppe, Alessandro, Bortoluzzi, Stefania, Biffi, Alessandra, Mecucci, Cristina, Bresolin, Silvia, Testi, Anna Maria

Source: American journal of hematology. 95(12):E335-E338

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100110087035.0x000001&indx=1&recIds=ETOCvdc_100110087035.0x000001

Somatic mutations in specific and connected subpathways are associated with short neuroblastoma patients' survival and indicate proteins targetable at onset of disease

Authors: Esposito, Maria Rosaria, Binatti, Andrea, Pantile, Marcella, Coppe, Alessandro, Mazzocco, Katia, Longo, Luca, Capasso, Mario, Lasorsa, Vito Alessandro, Luksch, Roberto, Bortoluzzi, Stefania, Tonini, Gian Paolo

Source: International journal of cancer. 143(10):2525-2536

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100084335032.0x000001&indx=1&recIds=ETOCvdc_100084335032.0x000001

A high definition picture of somatic mutations in chronic lymphoproliferative disorder of natural killer cells

Authors: Gasparini, Vanessa Rebecca, Binatti, Andrea, Coppe, Alessandro, Teramo, Antonella, Vicenzetto, Cristina, Calabretto, Giulia, Barilà, Gregorio, Barizza, Annica, Giussani, Edoardo, Facco, Monica, Mustjoki, Satu, Semenzato, Gianpietro, Zambello, Renato, Bortoluzzi, Stefania

Source: Blood cancer journal. 10(4)

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100174668181.0x000001&indx=1&recIds=ETOCvdc_100174668181.0x000001

Multiomic analysis of HER2-enriched and AR-positive breast carcinoma with apocrine differentiation and an oligometastatic course: a case report.

Authors: Poggiali, Brando, Ponzetti, Agostino, Malerba, Marica, Landuzzi, Fabio, Furia, Federica, Charrance, Debora, Trova, Sara, Perseghin, Vittoria, Falcone, Patrizia A., Alliod, Valentina, Malossi, Alessandra, Carassai, Pierpaolo, Familiari, Ubaldo, Vecchi, Manuela, Gustincich, Stefano, Schena, Marina, Cavalli, Andrea, Coppe, Alessandro

Source: Frontiers in Oncology; 2023, p1-9, 9p

Subject Terms: ANDROGEN receptors, GENE expression, PROGESTERONE receptors, CARCINOMA, NUCLEOTIDE sequencing, LOBULAR carcinoma

Surviving in a toxic world: transcriptomics and gene expression profiling in response to environmental pollution in the critically endangered European eel

Authors: Pujolar Jose, Marino Ilaria AM, Milan Massimo, Coppe Alessandro, Maes Gregory E, Capoccioni Fabrizio, Ciccotti Eleonora, Bervoets Lieven, Covaci Adrian, Belpaire Claude, Cramb Gordon, Patarnello Tomaso, Bargelloni Luca, Bortoluzzi Stefania, Zane Lorenzo

Source: BMC Genomics, Vol 13, Iss 1, p 507 (2012)

Subject Terms: Anguilla anguilla, European eel, Transcriptome, Microarrays, Pollution, Biotechnology, TP248.13-248.65, Genetics, QH426-470

File Description: electronic resource

Relation: http://www.biomedcentral.com/1471-2164/13/507; https://doaj.org/toc/1471-2164

Access URL: https://doaj.org/article/1bc0e01a57af4c8aa608c42c66cd71a4

Transcriptome sequencing and microarray development for the Manila clam, Ruditapes philippinarum: genomic tools for environmental monitoring

Authors: Patarnello Tomaso, Chelazzi Guido, Ciofi Claudio, Saavedra Carlos, Leite Ricardo B, Cancela Leonor M, Reinhardt Richard, Coppe Alessandro, Milan Massimo, Bortoluzzi Stefania, Bargelloni Luca

Source: BMC Genomics, Vol 12, Iss 1, p 234 (2011)

Subject Terms: Biotechnology, TP248.13-248.65, Genetics, QH426-470

File Description: electronic resource

Relation: http://www.biomedcentral.com/1471-2164/12/234; https://doaj.org/toc/1471-2164

Access URL: https://doaj.org/article/56f8515efa524eef95ce9855c9798c65

TRAM (Transcriptome Mapper): database-driven creation and analysis of transcriptome maps from multiple sources

Authors: Danieli Gian, Coppe Alessandro, Bortoluzzi Stefania, Canaider Silvia, Casadei Raffaella, Vitale Lorenza, Frabetti Flavia, Pelleri Maria, Giulietti Matteo, Piva Francesco, Facchin Federica, Lenzi Luca, Principato Giovanni, Ferrari Sergio, Strippoli Pierluigi

Source: BMC Genomics, Vol 12, Iss 1, p 121 (2011)

Subject Terms: Biotechnology, TP248.13-248.65, Genetics, QH426-470

File Description: electronic resource

Relation: http://www.biomedcentral.com/1471-2164/12/121; https://doaj.org/toc/1471-2164

Access URL: https://doaj.org/article/753528d5068c4796a16768460bba632f

Sequencing, de novo annotation and analysis of the first Anguilla anguilla transcriptome: EeelBase opens new perspectives for the study of the critically endangered european eel

Authors: Bernatchez Louis, Hansen Michael M, Larsen Peter F, Maes Gregory E, Pujolar Jose, Coppe Alessandro, Zane Lorenzo, Bortoluzzi Stefania

Source: BMC Genomics, Vol 11, Iss 1, p 635 (2010)

Subject Terms: Biotechnology, TP248.13-248.65, Genetics, QH426-470

File Description: electronic resource

Relation: http://www.biomedcentral.com/1471-2164/11/635; https://doaj.org/toc/1471-2164

Access URL: https://doaj.org/article/cd8c0533f6f3428d838b68d53d7c591d

A-MADMAN: Annotation-based microarray data meta-analysis tool

Authors: Romualdi Chiara, Risso Davide, Ferrari Francesco, Coppe Alessandro, Bisognin Andrea, Bicciato Silvio, Bortoluzzi Stefania

Source: BMC Bioinformatics, Vol 10, Iss 1, p 201 (2009)

Subject Terms: Computer applications to medicine. Medical informatics, R858-859.7, Biology (General), QH301-705.5

File Description: electronic resource

Relation: http://www.biomedcentral.com/1471-2105/10/201; https://doaj.org/toc/1471-2105

Access URL: https://doaj.org/article/be2dea1758234b0a8e8f62b3e9e58ca0

Novel definition files for human GeneChips based on GeneAnnot

Authors: Ferrari Sergio, Shmoish Michael, Safran Marilyn, Sirota Alexandra, Coppe Alessandro, Bortoluzzi Stefania, Ferrari Francesco, Lancet Doron, Danieli Gian, Bicciato Silvio

Source: BMC Bioinformatics, Vol 8, Iss 1, p 446 (2007)

Subject Terms: Computer applications to medicine. Medical informatics, R858-859.7, Biology (General), QH301-705.5

File Description: electronic resource

Relation: http://www.biomedcentral.com/1471-2105/8/446; https://doaj.org/toc/1471-2105

Access URL: https://doaj.org/article/fdf3b237b44e430f80a018356ee02327

Genomic expression during human myelopoiesis

Authors: Gemelli Claudia, Zini Roberta, Bicciato Silvio, Basso Dario, Coppe Alessandro, Bortoluzzi Stefania, Ferrari Francesco, Danieli Gian Antonio, Ferrari Sergio

Source: BMC Genomics, Vol 8, Iss 1, p 264 (2007)

Subject Terms: Biotechnology, TP248.13-248.65, Genetics, QH426-470

File Description: electronic resource

Relation: http://www.biomedcentral.com/1471-2164/8/264; https://doaj.org/toc/1471-2164

Access URL: https://doaj.org/article/f591780bc80c49c4a2408130b5fbf4c3

REEF: searching REgionally Enriched Features in genomes

Authors: Danieli Gian Antonio, Coppe Alessandro, Bortoluzzi Stefania

Source: BMC Bioinformatics, Vol 7, Iss 1, p 453 (2006)

Subject Terms: Computer applications to medicine. Medical informatics, R858-859.7, Biology (General), QH301-705.5

File Description: electronic resource

Relation: http://www.biomedcentral.com/1471-2105/7/453; https://doaj.org/toc/1471-2105

Access URL: https://doaj.org/article/28acf5c5cdcc4841961d97035cc1de43

iWhale: a computational pipeline based on Docker and SCons for detection and annotation of somatic variants in cancer WES data.

Authors: Binatti, Andrea, Bresolin, Silvia, Bortoluzzi, Stefania, stefania.bortoluzzi@unipd.it, Coppe, Alessandro, stefania.bortoluzzi@unipd.it

Source: Briefings in Bioinformatics; May2021, Vol. 22 Issue 3, p1-7, 7p

A multistep bioinformatic approach detects putative regulatory elements in gene promoters

Authors: Pizzi Cinzia, Bisognin Andrea, Coppe Alessandro, Bortoluzzi Stefania, Danieli Gian

Source: BMC Bioinformatics, Vol 6, Iss 1, p 121 (2005)

Subject Terms: Computer applications to medicine. Medical informatics, R858-859.7, Biology (General), QH301-705.5

File Description: electronic resource

Relation: http://www.biomedcentral.com/1471-2105/6/121; https://doaj.org/toc/1471-2105

Access URL: https://doaj.org/article/7f8d73e793be4072b33268179e23de50

Lack of Viral Load Within Chronic Lymphoproliferative Disorder of Natural Killer Cells: What Is Outside the Leukemic Clone?

Authors: Giussani, Edoardo, Binatti, Andrea, Calabretto, Giulia, Gasparini, Vanessa Rebecca, Teramo, Antonella, Vicenzetto, Cristina, Barilà, Gregorio, Facco, Monica, Coppe, Alessandro, Semenzato, Gianpietro, Bortoluzzi, Stefania, Zambello, Renato

Source: Frontiers in Oncology; 1/18/2021, Vol. 11, pN.PAG-N.PAG, 6p

Subject Terms: KILLER cells, LYMPHOPROLIFERATIVE disorders, VIRAL load, CYTOTOXIC T cells, CELL transformation

High incidence of activating STAT5B mutations in CD4-positive T-cell large granular lymphocyte leukemia

Authors: Andersson, Emma I. ^*, Tanahashi, Takahiro ^*, Sekiguchi, Nodoka, Gasparini, Vanessa Rebecca, Bortoluzzi, Sabrina, Kawakami, Toru, Matsuda, Kazuyuki, Mitsui, Takeki, Eldfors, Samuli, Bortoluzzi, Stefania, Coppe, Alessandro, Binatti, Andrea, Lagström, Sonja, Ellonen, Pekka, Fukushima, Noriyasu, Nishina, Sayaka, Senoo, Noriko, Sakai, Hitoshi, Nakazawa, Hideyuki, Kwong, Yok-Lam, Loughran, Thomas P., Maciejewski, Jaroslaw P., Mustjoki, Satu, Ishida, Fumihiro

Source: In Blood 17 November 2016 128(20):2465-2468

Sequencing and Characterization of Striped Venus Transcriptome Expand Resources for Clam Fishery Genetics.

Authors: Coppe, Alessandro¹, Bortoluzzi, Stefania¹, Murari, Giulia¹, MariaMarino, Ilaria Anna¹, Zane, Lorenzo¹ lorenzo.zane@unipd.it, Papetti, Chiara¹, Zhanjiang Liu²

Source: PLoS ONE. Sep2012, Vol. 7 Issue 9, Special section p1-10. 10p.

Subject Terms: *CLAM fisheries, *SHELLFISH fisheries research, *MICROSATELLITE repeats, *AQUATIC germplasm, *GENETIC polymorphism research

Geographic Terms: ADRIATIC Sea

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Whole Exome Sequencing Analysis in Chronic Lymphoproliferative Disorder of NK Cells (CLPD-NK) Patients Fails to Detect Significant Viral Load

Authors: Giussani, Edoardo ^*, Gasparini, Vanessa Rebecca ^*, Coppe, Alessandro ^*, Teramo, Antonella ^*, Binatti, Andrea ^*, Vicenzetto, Cristina ^*, Calabretto, Giulia ^*, Barilà, Gregorio ^*, Piazza, Francesco, Semenzato, Gianpietro ^*, Bortoluzzi, Stefania ^*, Zambello, Renato ^*

Source: In Blood 13 November 2019 134 Supplement 1:5214-5214

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