Machine learning to attribute the source of Campylobacter infections in the United States: A retrospective analysis of national surveillance data

Authors: Pascoe, Ben, Futcher, Georgina, Pensar, Johan, Bayliss, Sion C., Mourkas, Evangelos, Calland, Jessica K., Hitchings, Matthew D., Joseph, Lavin A., Lane, Charlotte G., Greenlee, Tiffany, Arning, Nicolas, Wilson, Daniel J., Jolley, Keith A., Corander, Jukka, Maiden, Martin C.J., Parker, Craig T., Cooper, Kerry K., Rose, Erica B., Hiett, Kelli, Bruce, Beau B., Sheppard, Samuel K.

Source: In Journal of Infection November 2024 89(5)

The epidemiology and impact of persistent Campylobacter infections on childhood growth among children 0–24 months of age in resource-limited settings

Authors: Schiaffino, Francesca, Colston, Josh M., Paredes Olortegui, Maribel, Peñataro Yori, Pablo, Mourkas, Evangelos, Pascoe, Ben, Lima, Aldo A.M., Mason, Carl J., Ahmed, Tahmeed, Kang, Gagandeep, Mduma, Estomih, Samie, Amidou, Zaidi, Anita, Liu, Jie, Cooper, Kerry K., Houpt, Eric R., Parker, Craig T., Lee, Gwenyth O., Kosek, Margaret N.

Source: In eClinicalMedicine October 2024 76

Proximity to humans is associated with antimicrobial-resistant enteric pathogens in wild bird microbiomes

Authors: Mourkas, Evangelos ^{1, 2, 12}, Valdebenito, José O. ^{3, 4, 5, 6, 12}, Marsh, Hannah ⁷, Hitchings, Matthew D. ⁸, Cooper, Kerry K. ⁹, Parker, Craig T. ¹⁰, Székely, Tamás ^{5, 7}, Johansson, Håkan ¹¹, Ellström, Patrik ², Pascoe, Ben ¹, Waldenström, Jonas ¹¹, Sheppard, Samuel K. ^{1, 13, 14, ∗}

Source: In Current Biology 9 September 2024 34(17):3955-3965

Genomic resistant determinants of multidrug-resistant Campylobacter spp. isolates in Peru

Authors: Schiaffino, Francesca, Parker, Craig T., Paredes Olortegui, Maribel, Pascoe, Ben, Manzanares Villanueva, Katia, Garcia Bardales, Paul F., Mourkas, Evangelos, Huynh, Steven, Peñataro Yori, Pablo, Romaina Cachique, Lucero, Gray, Hannah K., Salvatierra, Guillermo, Silva Delgado, Hermann, Sheppard, Samuel K., Cooper, Kerry K., Kosek, Margaret N.

Source: In Journal of Global Antimicrobial Resistance March 2024 36:309-318

Bacterial diversity of cantaloupes and soil from Arizona and California commercial fields at the point of harvest.

Authors: Goforth, Madison, Obergh, Victoria, Park, Richard, Porchas, Martin, Brierley, Paul, Turni, Tom, Patil, Bhimanagouda, Ravishankar, Sadhana, Huynh, Steven, Parker, Craig T., Cooper, Kerry K.

Source: PLoS ONE; 9/26/2024, Vol. 19 Issue 9, p1-21, 21p

Subject Terms: BACTERIAL diversity, SOIL sampling, MUSKMELON, BACILLACEAE, BACTERIAL communities

Bacterial community shifts of commercial apples, oranges, and peaches at different harvest points across multiple growing seasons.

Authors: Goforth, Madison, Cooper, Margarethe A., Oliver, Andrew S., Pinzon, Janneth, Skots, Mariya, Obergh, Victoria, Suslow, Trevor V., Flores, Gilberto E., Huynh, Steven, Parker, Craig T., Mackelprang, Rachel, Cooper, Kerry K.

Source: PLoS ONE; 4/16/2024, Vol. 19 Issue 4, p1-23, 23p

Subject Terms: BACTERIAL communities, STONE fruit, FRUIT trees, BIOLOGICAL extinction, HARVESTING time, ORANGES, PEACH

Bacterial diversity and composition on the rinds of specific melon cultivars and hybrids from across different growing regions in the United States.

Authors: Goforth, Madison, Obergh, Victoria, Park, Richard, Porchas, Martin, Crosby, Kevin M., Jifon, John L., Ravishankar, Sadhana, Brierley, Paul, Leskovar, Daniel L., Turini, Thomas A., Schultheis, Jonathan, Coolong, Timothy, Miller, Rhonda, Koiwa, Hisashi, Patil, Bhimanagouda S., Cooper, Margarethe A., Huynh, Steven, Parker, Craig T., Guan, Wenjing, Cooper, Kerry K.

Source: PLoS ONE; 4/11/2024, Vol. 19 Issue 4, p1-22, 22p

Subject Terms: BACTERIAL diversity, CULTIVARS, MELONS, MUSKMELON, BACTERIAL communities, FOOD pathogens, BACILLACEAE

Geographic Terms: UNITED States

Re-sequencing of a virulent strain of Campylobacter jejuni NCTC11168 reveals potential virulence factors

Authors: Cooper, Kerry K., Cooper, Margarethe A., Zuccolo, Andrea, Joens, Lynn A.

Source: In Research in Microbiology January 2013 164(1):6-11

Genomic population structure associated with repeated escape of Salmonella enterica ATCC14028s from the laboratory into nature.

Authors: Achtman, Mark¹, m.achtman@warwick.ac.uk, Van den Broeck, Frederik^2,3, Cooper, Kerry K.⁴, Lemey, Philippe², Parker, Craig T.⁵, Zhou, Zhemin¹, m.achtman@warwick.ac.uk

Source: PLoS Genetics; 9/27/2021, Vol. 17 Issue 9, p1-28, 28p

Virulence for chickens of Clostridium perfringens isolated from poultry and other sources

Authors: Cooper, Kerry K., Theoret, James R., Stewart, Bernard A., Trinh, Hien T., Glock, Robert D., Songer, J. Glenn

Source: In Anaerobe 2010 16(3):289-292

Necrotic enteritis in chickens: A paradigm of enteric infection by Clostridium perfringens type A

Authors: Cooper, Kerry K., Songer, J. Glenn

Source: In Anaerobe 2009 15(1):55-60

The Missing Pieces: The Role of Secretion Systems in Campylobacter jejuni Virulence.

Authors: Gabbert, Amber D., Mydosh, Jennifer L., Talukdar, Prabhat K., Gloss, Lisa M., McDermott, Jason E., Cooper, Kerry K., Clair, Geremy C., Konkel, Michael E.

Source: Biomolecules (2218-273X); Jan2023, Vol. 13 Issue 1, p135, 32p

Subject Terms: CAMPYLOBACTER jejuni, MIDDLE-income countries, STUNTED growth, DISEASE prevalence, DEVELOPED countries, CAMPYLOBACTER infections, SECRETION

Deletion of Constitutive Androstane Receptor Led to Intestinal Alterations and Increased Imidacloprid in Murine Liver.

Authors: Sen, Anushna, Goforth, Madison, Cooper, Kerry K, Anakk, Sayeepriyadarshini

Source: Journal of the Endocrine Society; Dec2022, Vol. 6 Issue 12, p1-9, 9p

Subject Terms: ANDROSTANE receptors, IMIDACLOPRID, PESTICIDE pollution, INTESTINES, SMALL intestine

"Candidatus Campylobacter infans" detection is not associated with diarrhea in children under the age of 2 in Peru.

Authors: Garcia Bardales, Paul F., Schiaffino, Francesca, Huynh, Steven, Paredes Olortegui, Maribel, Peñataro Yori, Pablo, Pinedo Vasquez, Tackeshy, Manzanares Villanueva, Katia, Curico Huansi, Greisi E., Shapiama Lopez, Wagner V., Cooper, Kerry K., Parker, Craig T., Kosek, Margaret N.

Source: PLoS Neglected Tropical Diseases; 10/17/2022, Vol. 16 Issue 10, p1-12, 12p

Subject Terms: CAMPYLOBACTER jejuni, CAMPYLOBACTER, CANDIDATUS, CAMPYLOBACTER coli, DIARRHEA, MIDDLE-income countries

Geographic Terms: IQUITOS (Peru), PERU

Shotgun metagenomics of fecal samples from children in Peru reveals frequent complex co-infections with multiple Campylobacter species.

Authors: Parker, Craig T., Schiaffino, Francesca, Huynh, Steven, Paredes Olortegui, Maribel, Peñataro Yori, Pablo, Garcia Bardales, Paul F., Pinedo Vasquez, Tackeshy, Curico Huansi, Greisi E., Manzanares Villanueva, Katia, Shapiama Lopez, Wagner V., Cooper, Kerry K., Kosek, Margaret N.

Source: PLoS Neglected Tropical Diseases; 10/04/2022, Vol. 16 Issue 10, p1-17, 17p

Subject Terms: CAMPYLOBACTER, CAMPYLOBACTER coli, CAMPYLOBACTER jejuni, MIXED infections, METAGENOMICS, SHIGELLOSIS, Q fever

Geographic Terms: PERU

Comparative genomics of enterohemorrhagic Escherichia coli O145:H28 demonstrates a common evolutionary lineage with Escherichia coli O157:H7.

Authors: Cooper, Kerry K.¹ kerry.cooper@ars.usda.gov, Mandrell, Robert E.¹ remandrell@gmail.com, Louie, Jacqueline W.¹ jacqueline.louie@ars.usda.gov, Korlach, Jonas² jkorlach@pacificbiosciences.com, Clark, Tyson A.² tclark@pacificbiosciences.com, Parker, Craig T.¹ craig.parker@ars.usda.gov, Huynh, Steven¹ steven.huynh@ars.usda.gov, Chain, Patrick S.³ pchain@lanl.gov, Ahmed, Sanaa³ sahmed@lanl.gov, Carter, Michelle Qiu¹ michelle.carter@ars.usda.gov

Source: BMC Genomics. 2014, Vol. 15 Issue 1, p1-32. 32p. 1 Color Photograph, 2 Diagrams, 2 Charts, 1 Graph.

Subject Terms: *BACTERIAL genetics, *ESCHERICHIA coli, *COMPARATIVE genomics, *GENOMES, *CHROMOSOMES, *PLASMIDS, *GENETIC transformation

Genomic Characterization of Campylobacter jejuni Adapted to the Guinea Pig (Cavia porcellus) Host.

Authors: Parker, Craig T., Cooper, Kerry K., Schiaffino, Francesca, Miller, William G., Huynh, Steven, Gray, Hannah K., Olortegui, Maribel Paredes, Bardales, Paul Garcia, Trigoso, Dixner Rengifo, Penataro-Yori, Pablo, Kosek, Margaret N.

Source: Frontiers in Cellular & Infection Microbiology; 3/18/2021, Vol. 11, pN.PAG-N.PAG, 11p

Subject Terms: CAMPYLOBACTER jejuni, GUINEA pigs, MIDDLE-income countries, GENES, NOROVIRUS diseases, GASTROENTERITIS

Genomic epidemiology of Campylobacter jejuni associated with asymptomatic pediatric infection in the Peruvian Amazon.

Authors: Pascoe, Ben, Schiaffino, Francesca, Murray, Susan, Méric, Guillaume, Bayliss, Sion C., Hitchings, Matthew D., Mourkas, Evangelos, Calland, Jessica K., Burga, Rosa, Yori, Pablo Peñataro, Jolley, Keith A., Cooper, Kerry K., Parker, Craig T., Olortegui, Maribel Paredes, Kosek, Margaret N., Sheppard, Samuel K.

Source: PLoS Neglected Tropical Diseases; 8/10/2020, Vol. 14 Issue 8, p1-19, 19p

Subject Terms: CAMPYLOBACTER jejuni, HIGH-income countries, EPIDEMIOLOGY, FOOD contamination, MICROBIAL ecology

Geographic Terms: PERU

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Campylobacter Abundance in Breastfed Infants and Identification of a New Species in the Global Enterics Multicenter Study.

Authors: Xiaoming Bian, Garber, Jolene M., Cooper, Kerry K., Steven Huynh, Jones, Jennifer, Mills, Michael K., Rafala, Daniel, Nasrin, Dilruba, Kotloff, Karen L., Parker, Craig T., Tennant, Sharon M., Miller, William G., Szymanski, Christine M.

Source: MSphere; Jan/Feb2020, Vol. 5 Issue 1, p1-15, 15p