Cultivation and sequencing-free protocol for Serratia marcescens detection and typing

Authors: Alvaro, Alessandro, Piazza, Aurora, Papaleo, Stella, Perini, Matteo, Pasala, Ajay Ratan, Panelli, Simona, Nardi, Tiago, Nodari, Riccardo, Sterzi, Lodovico, Pagani, Cristina, Merla, Cristina, Castelli, Daniele, Olivieri, Emanuela, Bracco, Silvia, Ferrando, Maria Laura, Saluzzo, Francesca, Rimoldi, Sara Giordana, Corbella, Marta, Cavallero, Annalisa, Prati, Paola, Farina, Claudio, Cirillo, Daniela Maria, Zuccotti, Gianvincenzo, Comandatore, Francesco

Source: In iScience 19 April 2024 27(4)

A spatiotemporal reconstruction of the 1630 plague epidemic in Milan

Authors: Galli, Massimo ^{1, 7}, Nodari, Riccardo ^{2, 7, 8, ∗}, Perini, Matteo ^{2, 3, 7}, Luconi, Ester ¹, Fois, Luca ⁴, Vaglienti, Folco ⁵, Bandi, Claudio ⁶, Biganzoli, Elia ¹, Comandatore, Francesco ^{2, 7}

Source: In iScience 19 May 2023 26(5)

IBDs and the pediatric age: Their peculiarities and the involvement of the microbiota

Authors: Cococcioni, Lucia, Panelli, Simona, Varotto-Boccazzi, Ilaria, Carlo, Domenico Di, Pistone, Dario, Leccese, Gabriella, Zuccotti, Gian Vincenzo, Comandatore, Francesco

Source: In Digestive and Liver Disease January 2021 53(1):17-25

Geographical reconstruction of the SARS‐CoV‐2 outbreak in Lombardy (Italy) during the early phase

Authors: Micheli, Valeria, Rimoldi, Sara G., Romeri, Francesca, Comandatore, Francesco, Mancon, Alessandro, Gigantiello, Anna, Perini, Matteo, Mileto, Davide, Pagani, Cristina, Lombardi, Alessandra, Gismondo, Maria R.

Source: Journal of medical virology. 93(3):1752-1757

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100114546190.0x000001&indx=1&recIds=ETOCvdc_100114546190.0x000001

Comparison of qPCR protocols for quantification of "Candidatus Saccharibacteria", belonging to the Candidate Phyla Radiation, suggests that 23S rRNA is a better target than 16S rRNA.

Authors: Papaleo, Stella, Nodari, Riccardo, Sterzi, Lodovico, D'Auria, Enza, Cattaneo, Camilla, Bettoni, Giorgia, Bonaiti, Clara, Pagliarini, Ella, Zuccotti, Gianvincenzo, Panelli, Simona, Comandatore, Francesco

Source: PLoS ONE; 12/26/2024, Vol. 19 Issue 12, p1-15, 15p

Subject Terms: GENETIC variation, ORAL microbiology, BACTERIAL diversity, RIBOSOMAL RNA, CANDIDATUS

Presence and infectivity of SARS-CoV-2 virus in wastewaters and rivers

Authors: Rimoldi, Sara Giordana, Stefani, Fabrizio, Gigantiello, Anna, Polesello, Stefano, Comandatore, Francesco, Mileto, Davide, Maresca, Mafalda, Longobardi, Concetta, Mancon, Alessandro, Romeri, Francesca, Pagani, Cristina, Cappelli, Francesca, Roscioli, Claudio, Moja, Lorenzo, Gismondo, Maria Rita, Salerno, Franco

Source: In Science of the Total Environment 20 November 2020 744

First imported case of Candida auris infection in Milan, Italy: genomic characterisation.

Authors: Rimoldi, Sara Giordana, Nodari, Riccardo, Rizzo, Alberto, Tamoni, Alessandro, Longobardi, Concetta, Pagani, Cristina, Grosso, Silvia, Salari, Federica, Galimberti, Laura, Olivieri, Pietro, Rizzardini, Giuliano, Catena, Emanuele, Antinori, Spinello, Comandatore, Francesco, Castelli, Antonio, Gismondo, Maria Rita

Source: Infection; Aug2024, Vol. 52 Issue 4, p1633-1638, 6p

Subject Terms: MYCOSES, CANDIDA, GENOMICS, HYPERTENSION, MULTIDRUG resistance, INTENSIVE care units, DIABETES, SEQUENCE analysis, PHENOTYPES

Geographic Terms: ITALY

Uno spaccato genomico su larga scala delle specie di Klebsiella isolate nel nord Italia rivela una trasmissione limitata tra contesti clinici e non-clinici. (Italian)

Authors: Thorpe, Harry A., Booton, Ross, Kallonen, Teemu, Gibbon, Marjorie J., Cout, Natacha, Passet, Virginie, López-Fernández, Sebastián, Rodrigues, Carla, Matthews, Louise, Mitchell, Sonia, Reeve, Richard, David, Sophia, Merla, Cristina, Corbella, Marta, Ferrari, Carolina, Comandatore, Francesco, Marone, Piero, Brisse, Sylvain, Sassera, Davide, Corander, Jukka

Source: Summa, Animali da Reddito; lug/ago2024, Vol. 19 Issue 6, p55-69, 15p

Unveiling Milan's hidden cases of plague occurred in autumn 1629, before the great 1630 epidemic.

Authors: Nodari, Riccardo, Fois, Luca, Luconi, Ester, Vaglienti, Folco, Comandatore, Francesco, Galli, Massimo

Source: Infezioni in Medicina; 2024, Vol. 32 Issue 3, p403-412, 10p

A meta-barcoding analysis of soil mycobiota of the upper Andean Colombian agro-environment

Authors: Landinez-Torres, Angela, Panelli, Simona, Picco, Anna, Comandatore, Francesco, Tosi, Solveig, Capelli, Enrica

Source: Scientific reports. 9(1):1-12

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100184655775.0x000001&indx=1&recIds=ETOCvdc_100184655775.0x000001

Identification of blaVIM-1 Gene in ST307 and ST661 Klebsiella pneumoniae Clones in Italy: Old Acquaintances for New Combinations

Authors: Piazza, Aurora, Comandatore, Francesco, Romeri, Francesca, Brilli, Matteo, Dichirico, Barbara, Ridolfo, Annalisa, Antona, Carlo, Bandi, Claudio, Gismondo, Maria Rita, Rimoldi, Sara Giordana

Source: MICROBIAL DRUG RESISTANCE -NEW YORK. 25(5):787-790

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100082469631.0x000001&indx=1&recIds=ETOCvdc_100082469631.0x000001

A metagenomic-based, cross-seasonal picture of fungal consortia associated with Italian soils subjected to different agricultural managements

Authors: Panelli, Simona, Capelli, Enrica, Comandatore, Francesco, Landinez-Torres, Angela, Granata, Mirko Umberto, Tosi, Solveig, Picco, Anna Maria

Source: In Fungal Ecology December 2017 30:1-9

Genetic barriers more than environmental associations explain Serratia marcescens population structure.

Authors: Sterzi, Lodovico, Nodari, Riccardo, Di Marco, Federico, Ferrando, Maria Laura, Saluzzo, Francesca, Spitaleri, Andrea, Allahverdi, Hamed, Papaleo, Stella, Panelli, Simona, Rimoldi, Sara Giordana, Batisti Biffignandi, Gherard, Corbella, Marta, Cavallero, Annalisa, Prati, Paola, Farina, Claudio, Cirillo, Daniela Maria, Zuccotti, Gianvincenzo, Bandi, Claudio, Comandatore, Francesco

Source: Communications Biology; 4/17/2024, Vol. 7 Issue 1, p1-12, 12p

Subject Terms: SERRATIA marcescens, REPRODUCTIVE isolation, GENOMICS, COMPARATIVE genomics, BACTERIAL population, GENE flow, METAGENOMICS

Transcriptome of larvae representing the Rhipicephalus sanguineus complex

Authors: De Marco, Leone, Epis, Sara, Comandatore, Francesco, Porretta, Daniele, Cafarchia, Claudia, Mastrantonio, Valentina, Dantas-Torres, Filipe, Otranto, Domenico, Urbanelli, Sandra, Bandi, Claudio, Sassera, Davide

Source: In Molecular and Cellular Probes February 2017 31:85-90

SARS Cov‐2 infection in a renal‐transplanted patient: A case report

Authors: Seminari, Elena, Colaneri, Marta, Sambo, Margherita, Gallazzi, Ilaria, Di Matteo, Angela, Roda, Silvia, Bruno, Raffaele, Mondelli, Mario U., Brunetti, Enrico, Maiocchi, Laura, Zuccaro, Valentina, Pagnucco, Layla, Mariani, Bianca, Ludovisi, Serena, Lissandrin, Raffaella, Parisi, Aldo, Sacchi, Paolo, Patruno, Savino F. A., Michelone, Giuseppe, Gulminetti, Roberto, Zanaboni, Domenico, Novati, Stefano, Maserati, Renato, Orsolini, Paolo, Vecchia, Marco, Sciarra, Marco, Asperges, Erika, Di Filippo, Alessandro, Biscarini, Simona, Lupi, Matteo, Pieri, Teresa C., Sachs, Michele, Valsecchi, Pietro, Perlini, Stefano, Alfano, Claudia, Bonzano, Marco, Briganti, Federica, Crescenzi, Giuseppe, Falchi, Anna G., Guarnone, Roberta, Guglielmana, Barbara, Maggi, Elena, Martino, Ilaria, Pettenazza, Pietro, Pioli di Marco, Serena, Quaglia, Federica, Sabena, Anna, Salinaro, Francesco, Speciale, Francesco, Zunino, Ilaria, De Lorenzo, Marzia, Secco, Gianmarco, Dimitry, Lorenzo, Cappa, Giovanni, Maisak, Igor, Chiodi, Benedetta, Sciarrini, Massimiliano, Barcella, Bruno, Resta, Flavia, Moroni, Luca, Vezzoni, Giulia, Scattaglia, Lorenzo, Boscolo, Elisa, Zattera, Caterina, Fidel, Tassi M., Vincenzo, Capozza, Vignaroli, Damiano, Bazzini, Marco, Iotti, Giorgio, Mojoli, Francesco, Belliato, Mirko, Perotti, Luciano, Mongodi, Silvia, Tavazzi, Guido, Marseglia, Gianluigi, Licari, Amelia, Brambilla, Ilaria, Daniela, Barbarini, Antonella, Bruno, Patrizia, Cambieri, Giulia, Campanini, Giuditta, Comolli, Marta, Corbella, Rossana, Daturi, Milena, Furione, Bianca, Mariani, Roberta, Maserati, Enza, Monzillo, Stefania, Paolucci, Maurizio, Parea, Elena, Percivalle, Antonio, Piralla, Francesca, Rovida, Antonella, Sarasini, Maurizio, Zavattoni, Guy, Adzasehoun, Laura, Bellotti, Ermanna, Cabano, Giuliana, Casali, Luca, Dossena, Gabriella, Frisco, Gabriella, Garbagnoli, Alessia, Girello, Viviana, Landini, Claudia, Lucchelli, Valentina, Maliardi, Simona, Pezzaia, Marta, Premoli, Alice, Bonetti, Giacomo, Caneva, Irene, Cassaniti, Alfonso, Corcione, Di Martino, Raffella, Di Napoli, Annapia, Alessandro, Ferrari, Guglielmo, Ferrari, Loretta, Fiorina, Federica, Giardina, Alessandra, Mercato, Federica, Novazzi, Giacomo, Ratano, Beatrice, Rossi, Maria, Sciabica I., Monica, Tallarita, Edoardo, Vecchio N., Cerino, Antonella, Varchetta, Stefania, Oliviero, Barbara, Mantovani, Stefania, Mele, Dalila, Calvi, Monica, Tizzonis, Michela, Nicora, Carlo, Triarico, Antonio, Petronella, Vincenzo, Marena, Carlo, Muzzi, Alba, Lago, Paolo, Comandatore, Francesco, Bissignandi, Gherard, Gaiarsa, Stefano, Rettani, Marco, Band, Claudio

Source: American journal of transplantation. 20(7):1882-1884

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100107350626.0x000001&indx=1&recIds=ETOCvdc_100107350626.0x000001

The evolution of intramitochondriality in Midichloria bacteria.

Authors: Floriano, Anna Maria, Batisti Biffignandi, Gherard, Castelli, Michele, Olivieri, Emanuela, Clementi, Emanuela, Comandatore, Francesco, Rinaldi, Laura, Opara, Maxwell, Plantard, Olivier, Palomar, Ana M., Noël, Valérie, Vijay, Amrita, Lo, Nathan, Makepeace, Benjamin L., Duron, Olivier, Jex, Aaron, Guy, Lionel, Sassera, Davide

Source: Environmental Microbiology; Nov2023, Vol. 25 Issue 11, p2102-2117, 16p

Subject Terms: COMPARATIVE genomics, MEMBRANE proteins, MITOCHONDRIAL membranes, ORGANELLES, VIRAL tropism, BACTERIA, SECRETION

EasyPrimer: user-friendly tool for pan-PCR/HRM primers design. Development of an HRM protocol on wzi gene for fast Klebsiella pneumoniae typing

Authors: Perini, Matteo, Piazza, Aurora, Panelli, Simona, Di Carlo, Domenico, Corbella, Marta, Gona, Floriana, Vailati, Francesca, Marone, Piero, Cirillo, Daniela Maria, Farina, Claudio, Zuccotti, Gianvincenzo, Comandatore, Francesco

Source: Scientific reports. 10(1)

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100131008023.0x000001&indx=1&recIds=ETOCvdc_100131008023.0x000001

Autochthonous ST405 NDM-5 producing Escherichia coli causing fatal sepsis in Northern Italy

Authors: Peri, Anna Maria, Piazza, Aurora, De Zan, Valentina, Carugati, Manuela, Muscatello, Antonio, Comandatore, Francesco, De Lorenzis, Elisa, Pluderi, Mauro, Arghittu, Milena, Cariani, Lisa, Cantù, Anna Paola, Bandi, Claudio, Cugno, Massimo, Gori, Andrea, Bandera, Alessandra

Source: International journal of antimicrobial agents. 55(5)

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100117975179.0x000001&indx=1&recIds=ETOCvdc_100117975179.0x000001

Bacterial genomic epidemiology, from local outbreak characterization to species-history reconstruction

Authors: Gaiarsa, Stefano, De Marco, Leone, Comandatore, Francesco, Marone, Piero, Bandi, Claudio, Sassera, Davide

Source: Pathogens and global health. 109(7):319-327

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100108695854.0x000001&indx=1&recIds=ETOCvdc_100108695854.0x000001

Tracking Nosocomial Klebsiella pneumoniae Infections and Outbreaks by Whole-Genome Analysis: Small-Scale Italian Scenario within a Single Hospital

Authors: Onori, Raffaella, Gaiarsa, Stefano, Comandatore, Francesco, Pongolini, Stefano, Brisse, Sylvain, Colombo, Alberto, Cassani, Gianluca, Marone, Piero, Grossi, Paolo, Minoja, Giulio

Source: Journal of clinical microbiology. 53(9):2861-2868

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCRN602584523&indx=1&recIds=ETOCRN602584523