The G\=oMartini approach: Revisiting the concept of contact maps and the modelling of protein complexes

Authors: Cofas-Vargas, Luis F., Moreira, Rodrigo A., Poblete, Simón, Chwastyk, Mateusz, Poma, Adolfo B.

Subject Terms: Condensed Matter - Soft Condensed Matter, Quantitative Biology - Biomolecules

Access URL: http://arxiv.org/abs/2311.08174

Nanomechanical footprint of SARS-CoV-2 variants in complex with a potent nanobody by molecular simulations.

Authors: Cofas-Vargas, Luis F., Olivos-Ramirez, Gustavo E., Chwastyk, Mateusz, Moreira, Rodrigo A., Baker, Joseph L., Marrink, Siewert J., Poma, Adolfo B.

Source: Nanoscale; 10/28/2024, Vol. 16 Issue 40, p18824-18834, 11p

BPS2025 - Capturing large conformational changes in proteins by the enhanced GōMartini 3 approach

Authors: Poma, Adolfo B. ¹, Cofas-Vargas, Luis F. ¹, Olivos-Ramirez, Gustavo E. ¹, Rauda-Ceja, Jesús Antonio ², Durán-Vargas, Adrián ², Minh Tran, Thu Thi ^{3, 4}

Source: In Biophysical Journal 13 February 2025 124(3) Supplement 1:485a-485a

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Capturing the biomechanics of SARS-COV-2/antibody complexes by GōMartini simulation

Authors: Cofas-Vargas, Luis F., Poma, Adolfo

Source: In Biophysical Journal 8 February 2024 123(3) Supplement 1:44a-44a

Integrative overview of antibodies against SARS-CoV-2 and their possible applications in COVID-19 prophylaxis and treatment.

Authors: Valdez-Cruz, Norma A., García-Hernández, Enrique, Espitia, Clara, Cobos-Marín, Laura, Altamirano, Claudia, Bando-Campos, Carlos G., Cofas-Vargas, Luis F., Coronado-Aceves, Enrique W., González-Hernández, Ricardo A., Hernández-Peralta, Pablo, Juárez-López, Daniel, Ortega-Portilla, Paola A., Restrepo-Pineda, Sara, Zelada-Cordero, Patricio, Trujillo-Roldán, Mauricio A.

Source: Microbial Cell Factories; 4/22/2021, Vol. 20 Issue 1, p1-32, 32p

Subject Terms: COVID-19 treatment, SARS-CoV-2, COVID-19 pandemic, CONVALESCENT plasma, BLOOD coagulation factor VIII, IMMUNOGLOBULINS

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