Implementation of the WHO Tricycle protocol for surveillance of extended-spectrum β-lactamase producing Escherichia coli in humans, chickens, and the environment in Madagascar: a prospective genomic epidemiology study

Authors: Milenkov, Milen, Proux, Caroline, Rasolofoarison, Tiavina Lalaina, Rakotomalala, Fetra Angelot, Rasoanandrasana, Saida, Rahajamanana, Vonintsoa Lalaina, Rafalimanana, Christian, Ravaoarisaina, Zakasoa, Ramahatafandry, Ilo Tsimok’Haja, Westeel, Emilie, Petitjean, Marie, Berti, Valentine, Marin, Julie, Mullaert, Jimmy, Han, Lien, Clermont, Olivier, Raskine, Laurent, Endtz, Hubert, Andremont, Antoine, Denamur, Erick, Komurian-Pradel, Florence, Samison, Luc Hervé, Armand-Lefevre, Laurence

Source: In The Lancet Microbe August 2024 5(8)

Influence of hydrological conditions on the Escherichia coli population structure in the water of a creek on a rural watershed

Authors: Ratajczak Mehdy, Laroche Emilie, Berthe Thierry, Clermont Olivier, Pawlak Barbara, Denamur Erick, Petit Fabienne

Source: BMC Microbiology, Vol 10, Iss 1, p 222 (2010)

Subject Terms: Microbiology, QR1-502

File Description: electronic resource

Relation: http://www.biomedcentral.com/1471-2180/10/222; https://doaj.org/toc/1471-2180

Access URL: https://doaj.org/article/08fcd2ebae804db284113203c5b0d901

aes, the gene encoding the esterase B in Escherichia coli, is a powerful phylogenetic marker of the species

Authors: Tuffery Pierre, Darlu Pierre, Garry Louis, Clermont Olivier, Hoede Claire, Lescat Mathilde, Denamur Erick, Picard Bertrand

Source: BMC Microbiology, Vol 9, Iss 1, p 273 (2009)

Subject Terms: Microbiology, QR1-502

File Description: electronic resource

Relation: http://www.biomedcentral.com/1471-2180/9/273; https://doaj.org/toc/1471-2180

Access URL: https://doaj.org/article/0ca7627c63c24bf29bc932fb793ec675

Phylogenetic and genomic diversity of human bacteremic Escherichia coli strains

Authors: Clermont Olivier, Lortholary Olivier, Carbonnelle Etienne, Guigon Ghislaine, Frapy Eric, Diancourt Laure, Passet Virginie, Landraud Luce, Jaureguy Françoise, Denamur Erick, Picard Bertrand, Nassif Xavier, Brisse Sylvain

Source: BMC Genomics, Vol 9, Iss 1, p 560 (2008)

Subject Terms: Biotechnology, TP248.13-248.65, Genetics, QH426-470

File Description: electronic resource

Relation: http://www.biomedcentral.com/1471-2164/9/560; https://doaj.org/toc/1471-2164

Access URL: https://doaj.org/article/589269f3c6224906b4b46009be3bb485

Modeling the bacterial dynamics in the gut microbiota following an antibiotic‐induced perturbation

Authors: Guk, Jinju, Bridier‐Nahmias, Antoine, Magnan, Mélanie, Grall, Nathalie, Duval, Xavier, Clermont, Olivier, Ruppé, Etienne, d'Humières, Camille, Tenaillon, Olivier, Denamur, Erick, Mentré, France, Guedj, Jérémie, Burdet, Charles

Source: CPT: pharmacometrics & systems pharmacology. 11(7):906-918

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100156108115.0x000001&indx=1&recIds=ETOCvdc_100156108115.0x000001

The E phylogroup of Escherichia coli is highly diverse and mimics the whole E. coli species population structure

Authors: Clermont, Olivier, Condamine, Bénédicte, Dion, Sara, Gordon, David M., Denamur, Erick

Source: Environmental microbiology. 23(11):7139-7151

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100135314237.0x000001&indx=1&recIds=ETOCvdc_100135314237.0x000001

Increased risk of acquisition and transmission of ESBL-producing Enterobacteriaceae in malnourished children exposed to amoxicillin

Authors: Maataoui, Naouale, Langendorf, Céline, Berthe, Fatou, Bayjanov, Jumamurat R, van Schaik, Willem, Isanaka, Sheila, Grais, Rebecca F, Clermont, Olivier, Andremont, Antoine, Armand-Lefèvre, Laurence, Woerther, Paul-Louis

Source: Journal of antimicrobial chemotherapy. 75(3):709-717

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100100122457.0x000001&indx=1&recIds=ETOCvdc_100100122457.0x000001

The bacterial genetic determinants of Escherichia coli capacity to cause bloodstream infections in humans.

Authors: Burgaya, Judit^1,2, Marin, Julie³, Royer, Guilhem^4,5,6, Condamine, Bénédicte⁴, Gachet, Benoit⁴, Clermont, Olivier⁴, Jaureguy, Françoise³, Burdet, Charles⁴, Lefort, Agnès⁴, de Lastours, Victoire⁴, Denamur, Erick^4,7, erick.denamur@inserm.fr, Galardini, Marco^1,2, Blanquart, François⁸

Source: PLoS Genetics; 8/2/2023, Vol. 19 Issue 8, p1-28, 28p

Characterization and rapid identification of phylogroup G in Escherichia coli, a lineage with high virulence and antibiotic resistance potential

Authors: Clermont, Olivier, Dixit, Ojas V. A., Vangchhia, Belinda, Condamine, Bénédicte, Dion, Sara, Bridier‐Nahmias, Antoine, Denamur, Erick, Gordon, David

Source: Environmental microbiology. 21(8):3107-3117

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100087230165.0x000001&indx=1&recIds=ETOCvdc_100087230165.0x000001

Épidémiologie moléculaire et cinétique des infections urinaires précoces à Escherichia coli chez les sujets transplantés d’un rein

Alternate Title: Molecular epidemiology and kinetics of early Escherichia coli urinary tract infections in kidney transplant recipients (English)

Authors: Tashk, Parvine, Lecronier, Marie, Clermont, Olivier, Renvoisé, Aurélie, Aubry, Alexandra, Barrou, Benoît, Hertig, Alexandre, Lescat, Mathilde, Tenaillon, Olivier, Denamur, Erick, Tourret, Jérôme

Source: In Nephrologie et Thérapeutique June 2017 13(4):236-244

Clinical and Bacteriological Specificities of Escherichia coli Bloodstream Infections From Biliary Portal of Entries.

Authors: Sokal, Aurélien, Royer, Guilhem, Esposito-Farese, Marina, Clermont, Olivier, Condamine, Bénédicte, Laouénan, Cedric, Lefort, Agnès, Denamur, Erick, Lastours, Victoire de, Groups, for the Colibafi Septicoli and Coliville

Source: Journal of Infectious Diseases; 6/15/2024, Vol. 229 Issue 6, p1679-1687, 9p

Subject Terms: ESCHERICHIA coli diseases, SEPTIC shock, DRUG resistance in bacteria, ESCHERICHIA coli

Major role of iron uptake systems in the intrinsic extra-intestinal virulence of the genus Escherichia revealed by a genome-wide association study.

Authors: Galardini, Marco¹ (AUTHOR) mgala@bu.edu, Clermont, Olivier² (AUTHOR), Baron, Alexandra² (AUTHOR), Busby, Bede³ (AUTHOR), Dion, Sara² (AUTHOR), Schubert, Sören⁴ (AUTHOR), Beltrao, Pedro¹ (AUTHOR), Denamur, Erick^2,5 (AUTHOR) mgala@bu.edu

Source: PLoS Genetics. 10/28/2020, Vol. 16 Issue 10, p1-19. 19p.

Subject Terms: *ESCHERICHIA, *INTESTINAL infections, *OPERONS, *MOLECULAR phylogeny, *NUCLEOTIDE sequencing, *ANTIBIOTICS

Escherichia coli Bacteremia in Children

Authors: Burdet, Charles, Clermont, Olivier, Bonacorsi, Stéphane, Laouénan, Cédric, Bingen, Edouard, Aujard, Yannick, Mentré, France, Lefort, Agnès, Denamur, Erick

Source: Pediatric infectious disease journal. 33(8):872-879

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCETOCvdc_100030234487.0x000001&indx=1&recIds=ETOCETOCvdc_100030234487.0x000001

Decreased susceptibility to chlorhexidine affects a quarter of Escherichia coli isolates responsible for pneumonia in ICU patients

Authors: La Combe, Béatrice, Bleibtreu, Alexandre, Messika, Jonathan, Fernandes, Romain, Clermont, Olivier, Branger, Catherine, Billard-Pomares, Typhaine, Barnaud, Guilène, Magdoud, Fatma, Eveillard, Matthieu, Kouatchet, Achille, Lasocki, Sigismond, Asfar, Pierre, Corvec, Stéphane, Lakhal, Karim, Armand-Lefevre, Laurence, Wolff, Michel, Timsit, Jean-François, Bourdon, Sandrine, Reignier, Jean, Martin, Stéphanie, Fihman, Vincent, de Prost, Nicolas, Bador, Julien, Charles, Pierre-Emmanuel, Goret, Julien, Boyer, Alexandre, Wallet, Frederic, Jaillette, Emmanuelle, Nseir, Saad, Landraud, Luce, Ruimy, Raymond, Danin, Pierre-Eric, Dellamonica, Jean, Cremniter, Julie, Frat, Jean-Pierre, Jauréguy, Françoise, Clec'h, Christophe, Decré, Dominique, Maury, Eric, Dreyfuss, Didier, Denamur, Erick, Ricard, Jean-Damien

Source: Intensive care medicine. 44(4):531-533

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100125266315.0x000001&indx=1&recIds=ETOCvdc_100125266315.0x000001

Genome wide association study of Escherichia coli bloodstream infection isolates identifies genetic determinants for the portal of entry but not fatal outcome.

Authors: Denamur, Erick^1,2, erick.denamur@inserm.fr, Condamine, Bénédicte¹, Esposito-Farèse, Marina³, Royer, Guilhem^1,4,5, Clermont, Olivier¹, Laouenan, Cédric^1,3, Lefort, Agnès^1,6, de Lastours, Victoire^1,6, Galardini, Marco^7,8, erick.denamur@inserm.fr

Source: PLoS Genetics; 3/24/2022, Vol. 18 Issue 3, p1-20, 20p

Emergence and Dissemination of Extended-Spectrum β-Lactamase—Producing Escherichia coli in the Community: Lessons from the Study of a Remote and Controlled Population

Authors: Woerther, Paul-Louis, Angebault, Cécile, Lescat, Mathilde, Ruppé, Etienne, Skurnik, David, Mniai, Assiya El, Clermont, Olivier, Jacquier, Hervé, Costa, Anaelle Da, Renard, Magaly, Bettinger, Régis Marc, Epelboin, Loïc, Dupont, Claire, Guillemot, Didier, Rousset, François, Arlet, Guillaume, Denamur, Erick, Djossou, Félix, Andremont, Antoine

Source: The Journal of Infectious Diseases, 2010 Aug . 202(4), 515-523.

Access URL: https://www.jstor.org/stable/25706953

Pneumonia-Specific Escherichia coli with Distinct Phylogenetic and Virulence Profiles, France, 2012-2014.

Authors: La Combe, Béatrice^1,2,3, Clermont, Olivier^1,2, Messika, Jonathan^1,2,3, Eveillard, Matthieu⁴, Kouatchet, Achille⁴, Lasocki, Sigismond⁴, Corvec, Stéphane⁵, Lakhal, Karim⁶, Billard-Pomares, Typhaine^1,2,3, Fernandes, Romain^1,2,3, Armand-Lefevre, Laurence^1,2,7, Bourdon, Sandra⁸, Reignier, Jean⁵, Fihman, Vincent⁹, de Prost, Nicolas⁹, Bador, Julien¹⁰, Goret, Julien¹¹, Wallet, Frederic¹², Denamur, Erick^1,2,7, Ricard, Jean-Damien^1,2,3 jean-damien.ricard@aphp.fr

Source: Emerging Infectious Diseases. Apr2019, Vol. 25 Issue 4, p710-718. 9p.

Subject Terms: *ESCHERICHIA coli

Geographic Terms: FRANCE

Lack of association between colistin resistance and chlorhexidine reduced susceptibility in clinical isolates of Escherichia coli

Authors: Royer, Guilhem, Poirel, Laurent, La Combe, Béatrice, Clermont, Olivier, Chau, Françoise, Mercier-Darty, Mélanie, Denamur, Erick, Nordmann, Patrice, Ricard, Jean-Damien, Decousser, Jean-Winoc

Source: Journal of antimicrobial chemotherapy. 76(10):2736-2737

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100130231285.0x000001&indx=1&recIds=ETOCvdc_100130231285.0x000001

Animal and human pathogenic Escherichia coli strains share common genetic backgrounds

Authors: Clermont, Olivier, Olier, Maiwenn, Hoede, Claire, Diancourt, Laure, Brisse, Sylvain, Keroudean, Monique, Glodt, Jérémy, Picard, Bertrand, Oswald, Eric, Denamur, Erick

Source: In Infection, Genetics and Evolution April 2011 11(3):654-662

Maternally acquired genotoxic Escherichia coli alters offspring's intestinal homeostasis

Authors: Payros, Delphine, Secher, Thomas, Boury, Michèle, Brehin, Camille, Ménard, Sandrine, Salvador-Cartier, Christel, Cuevas-Ramos, Gabriel, Watrin, Claude, Marcq, Ingrid, Nougayrède, Jean-Philippe, Dubois, Damien, Bedu, Antoine, Garnier, Fabien, Clermont, Olivier, Denamur, Erick, Plaisancié, Pascale, Theodorou, Vassilia, Fioramonti, Jean, Olier, Maïwenn, Oswald, Eric

Source: Gut microbes. 5(3):313-512

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100050752431.0x000001&indx=1&recIds=ETOCvdc_100050752431.0x000001