Penalized Deep Partially Linear Cox Models with Application to CT Scans of Lung Cancer Patients

Authors: Sun, Yuming, Kang, Jian, Haridas, Chinmay, Mayne, Nicholas R., Potter, Alexandra L., Yang, Chi-Fu Jeffrey, Christiani, David C., Li, Yi

Subject Terms: Statistics - Machine Learning, Computer Science - Machine Learning, Electrical Engineering and Systems Science - Image and Video Processing

Access URL: http://arxiv.org/abs/2303.05341

Unconfounded Meta-analytical Frameworks for Multivariate Outcomes in Multigroup Observational Studies using Concordant Weights

Authors: Guha, Subharup, Christiani, David C., Subramanian, S. V., Li, Yi

Subject Terms: Statistics - Methodology

Access URL: http://arxiv.org/abs/2212.09128

Blood-based biomarkers derived from tumor-informed DNA methylation analysis for lung adenocarcinoma

Authors: Chitta, Pitaksin ^{a, b}, Barrow, Timothy M. ^c, Dawangpa, Atchara ^{a, b}, Christiani, David C. ^d, Poungvarin, Naravat ^b, Sae-Lee, Chanachai ^{a, b, ⁎}

Source: In Heliyon 28 February 2025 11(4)

Characterization of Occupational Endotoxin-Related Small Airway Disease With Longitudinal Paired Inspiratory/Expiratory CT Scans

Authors: Sun, Yuming ^a, Kang, Jian ^b, Zhang, Feng-ying ^c, Wang, Hantao ^d, Lai, Peggy S. ^{d, e}, Washko, George R. ^f, San Jose Estepar, Raul ^f, Christiani, David C. ^{d, e}, Li, Yi ^{b, ∗}

Source: In Chest

Association of Sarcopenia With Toxicity and Survival in Patients With Lung Cancer, a Multi-Institutional Study With External Dataset Validation

Authors: Saraf, Anurag ^{1, 2, ⁎}, He, John ^{1, 2}, Shin, Kee-Young ³, Weiss, Jakob ^{2, 4}, Awad, Mark M. ⁵, Gainor, Justin ⁶, Kann, Benjamin H. ^{1, 2}, Christiani, David C. ^{7, 8}, Aerts, Hugo J.W.L. ^{1, 2, 9}, Mak, Raymond H. ^{1, 2}

Source: In Clinical Lung Cancer January 2025

Ambient beta particle radioactivity and lung cancer survival: Results from the Boston Lung Cancer Study

Authors: Lee, Mi-Sun S. ^a, Eum, Ki-Do ^{b, c}, Li, Longxiang ^d, Iafrate, John ^e, Lanuti, Michael ^e, Koutrakis, Petros ^d, Christiani, David C. ^{a, f, g, ⁎}

Source: In Environmental Research 1 January 2025 264 Part 1

A New Integrative Method for Multigroup Comparisons of Censored Survival Outcomes in Multiple Observational Studies

Authors: Guha, Subharup, Christiani, David C., Li, Yi

Subject Terms: Statistics - Methodology

Access URL: http://arxiv.org/abs/2209.06361

Radiological distribution patterns in restrictive chronic lung allograft dysfunction: Impact on survival across all phenotypes

Authors: Fukuda, Taiki ^{a, b, ⁎}, Nakamura, Yusei ^{a, c}, Tseng, Shu-Chi ^d, Ko, Yuki ^a, Gagne, Staci M. ^{a, e}, Johkoh, Takeshi ^f, Li, Yi ^g, Christiani, David C. ^{h, i}, Ojiri, Hiroya ^b, Sholl, Lynette ^j, Nishino, Mizuki ^{a, e}, Hatabu, Hiroto ^a

Source: In JHLT Open May 2025 8

Systematic analysis of relationships between serum lipids with all-cause and cause-specific mortality: Evidence from prospective cohort studies of UK Biobank and Women's Health Initiative

Authors: You, Dongfang ^{a, b, ⁎⁎, 1}, Tang, Yingdan ^{a, 1}, Lange, Theis ^c, Wu, Yaqian ^a, Lu, Mengyi ^a, Shao, Fang ^a, Shen, Sipeng ^a, Zhang, Ruyang ^{a, d}, Zhou, Hongwen ^e, Xu, Hongyang ^f, Yin, Yongmei ^b, Wei, Yongyue ^g, Chen, Feng ^{a, d, h, i}, Shen, Hongbing ^j, Christiani, David C. ^{k, 2}, Zhao, Yang ^{a, d, h, i, l, ⁎}

Source: In Clinical Nutrition April 2025 47:94-102

Maternal arsenic exposure modifies associations between arsenic, folate and arsenic metabolism gene variants, and spina bifida risk: A case‒control study in Bangladesh

Authors: Wei, Chih-Fu, Tindula, Gwen, Mukherjee, Sudipta Kumer, Wang, Xingyan, Ekramullah, Sheikh Muhammad, Arman, D.M., Islam, Md Joynul, Azim, Mubinul, Rahman, Asifur, Afreen, Shamantha, Ziaddin, Md, Warf, Benjamin C., Weisskopf, Marc G., Christiani, David C., Liang, Liming, Mazumdar, Maitreyi

Source: In Environmental Research 15 November 2024 261

Additional impact of genetic ancestry over race/ethnicity to prevalence of KRAS mutations and allele-specific subtypes in non-small cell lung cancer

Authors: Wang, Xinan, Hou, Kangcheng, Ricciuti, Biagio, Alessi, Joao V., Li, Xihao, Pecci, Federica, Dey, Rounak, Luo, Jia, Awad, Mark M., Gusev, Alexander, Lin, Xihong, Johnson, Bruce E., Christiani, David C.

Source: In Human Genetics and Genomics Advances 18 July 2024 5(3)

Urine cadmium and urolithiasis: A systematic review and meta-analysis

Authors: Chen, Yuan-Hsin ^a, Wei, Chih-Fu ^a, Cheng, Ya-Yun ^{b, c}, Mita, Carol ^d, Hoang, Chinh Lu Duc ^f, Lin, Cheng-Kuan ^{e, f, ⁎}, Chang, Yu-Tzu ^g, Christiani, David C. ^a

Source: In Environmental Research 1 July 2024 252 Part 1

Impact of climate change on immune responses and barrier defense

Authors: Skevaki, Chrysanthi, Nadeau, Kari C., Rothenberg, Marc E., Alahmad, Barrak, Mmbaga, Blandina T., Masenga, Gileard G., Sampath, Vanitha, Christiani, David C., Haahtela, Tari, Renz, Harald

Source: In The Journal of Allergy and Clinical Immunology May 2024 153(5):1194-1205

Guidance on Mitigating the Risk of Transmitting Respiratory Infections During Nebulization by the COPD Foundation Nebulizer Consortium

Authors: Biney, Isaac N., Ari, Arzu, Barjaktarevic, Igor Z., Carlin, Brian, Christiani, David C., Cochran, Lauren, Drummond, M. Bradley, Johnson, Karmon, Kealing, Dan, Kuehl, Philip J., Li, Jie, Mahler, Donald A., Martinez, Sergio, Ohar, Jill, Radonovich, Lewis J., Sood, Akshay, Suggett, Jason, Tal-Singer, Ruth, Tashkin, Donald, Yates, Julie, Cambridge, Lisa, Dailey, Patricia A., Mannino, David M., Dhand, Rajiv

Source: In Chest March 2024 165(3):653-668

Proteome-wide Mendelian randomization identifies causal plasma proteins in lung cancer

Authors: Li, Hongru ^{1, 7}, Du, Sha ^{1, 2, 7}, Dai, Jinglan ¹, Jiang, Yunke ¹, Li, Zaiming ¹, Fan, Qihan ¹, Zhang, Yixin ¹, You, Dongfang ^{1, 3}, Zhang, Ruyang ^{1, 4}, Zhao, Yang ^{1, 4}, Christiani, David C. ^{5, 6}, Shen, Sipeng ^{1, 2, 4, 9, ∗}, Chen, Feng ^{1, 2, 3, 8, ∗∗}

Source: In iScience 16 February 2024 27(2)

ARTEMIS: An independently validated prognostic prediction model of breast cancer incorporating epigenetic biomarkers with main effects and gene-gene interactions

Authors: Xue, Maojie, Xu, Ziang, Wang, Xiang, Chen, Jiajin, Kong, Xinxin, Zhou, Shenxuan, Wu, Jiamin, Zhang, Yuhao, Li, Yi, Christiani, David C., Chen, Feng, Zhao, Yang, Zhang, Ruyang

Source: In Journal of Advanced Research August 2024

Association between duration of smoking abstinence before non-small-cell lung cancer diagnosis and survival: a retrospective, pooled analysis of cohort studies

Authors: Fares, Aline F, Li, Yao, Jiang, Mei, Brown, M Catherine, Lam, Andrew C L, Aggarwal, Reenika, Schmid, Sabine, Leighl, Natasha B, Shepherd, Frances A, Wang, Zhichao, Diao, Nancy, Wenzlaff, Angela S, Xie, Juntao, Kohno, Takashi, Caporaso, Neil E, Harris, Curtis, Ma, Hongxia, Barnett, Matthew J, Leal, Leticia Ferro, Fernandez-Tardon, G, Pérez-Ríos, Mónica, Davies, Michael P A, Taylor, Fiona, Schöttker, Ben, Brennan, Paul, Zaridze, David, Holcatova, Ivana, Lissowska, Jolanta, Świątkowska, Beata, Mates, Dana, Savic, Milan, Brenner, Hermann, Andrew, Angeline, Cox, Angela, Field, John K, Ruano-Ravina, Alberto, Shete, Sanjay S, Tardon, Adonina, Wang, Ying, Le Marchand, Loic, Reis, Rui Manuel, Schabath, Matthew B, Chen, Chu, Shen, Hongbing, Ryan, Brid M, Landi, Maria Teresa, Shiraishi, Kouya, Zhang, Jie, Schwartz, Ann G, Tsao, Ming S, Christiani, David C, Yang, Ping, Hung, Rayjean J, Xu, Wei, Liu, Geoffrey

Source: Lancet.Public health. 8(9):e691-e700

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100195753543.0x000001&indx=1&recIds=ETOCvdc_100195753543.0x000001

Prospective observational pilot study of quantitative light dosimetry in erythropoietic protoporphyria

Authors: Dickey, Amy K., Rebeiz, Lina, Raef, Haya, Leaf, Rebecca K., Elmariah, Sarina, Naik, Hetanshi, Anderson, Karl, Conley, Jared, Iyasere, Christiana, Zhao, Sophia, Birkenfeld, Judith S., Arroyo-Gallego, Teresa, Wheeden, Kristen, Ducamp, Sarah, Christiani, David C., Fleming, Mark D., Kochevar, Irene

Source: Journal of the American Academy of Dermatology. 88(5):1148-1151

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100187579891.0x000001&indx=1&recIds=ETOCvdc_100187579891.0x000001

A trans‐omics assessment of gene–gene interaction in early‐stage NSCLC

Authors: Chen, Jiajin, Song, Yunjie, Li, Yi, Wei, Yongyue, Shen, Sipeng, Zhao, Yang, You, Dongfang, Su, Li, Bjaanæs, Maria Moksnes, Karlsson, Anna, Planck, Maria, Staaf, Johan, Helland, Åslaug, Esteller, Manel, Shen, Hongbing, Christiani, David C., Zhang, Ruyang, Chen, Feng

Source: Molecular oncology. 17(1):173-187

Availability: http://explore.bl.uk/primo_library/libweb/action/display.do?tabs=detailsTab&gathStatTab=true&ct=display&fn=search&doc=ETOCvdc_100170274108.0x000001&indx=1&recIds=ETOCvdc_100170274108.0x000001

Impact of Aneuploidy and Chromosome 9p Loss on Tumor Immune Microenvironment and Immune Checkpoint Inhibitor Efficacy in NSCLC

Authors: Alessi, Joao V., Wang, Xinan, Elkrief, Arielle, Ricciuti, Biagio, Li, Yvonne Y., Gupta, Hersh, Spurr, Liam F., Rizvi, Hira, Luo, Jia, Pecci, Federica, Lamberti, Giuseppe, Recondo, Gonzalo, Venkatraman, Deepti, Di Federico, Alessandro, Gandhi, Malini M., Vaz, Victor R., Nishino, Mizuki, Sholl, Lynette M., Cherniack, Andrew D., Ladanyi, Marc, Price, Adam, Richards, Allison L., Donoghue, Mark, Lindsay, James, Sharma, Bijaya, Turner, Madison M., Pfaff, Kathleen L., Felt, Kristen D., Rodig, Scott J., Lin, Xihong, Meyerson, Matthew L., Johnson, Bruce E., Christiani, David C., Schoenfeld, Adam J., Awad, Mark M.

Source: In Journal of Thoracic Oncology November 2023 18(11):1524-1537