Librarian: A quality control tool to analyse sequencing library compositions [version 2; peer review: 1 approved, 2 approved with reservations]

Authors: Caroline Gaud, Simon Andrews, Kartavya Vashishtha, Christel Krueger

Source: F1000Research, Vol 11 (2024)

Subject Terms: high throughput sequencing, quality control, sequencing libraries, FastQ, base composition, eng, Medicine, Science

File Description: electronic resource

Relation: https://f1000research.com/articles/11-1122/v2; https://doaj.org/toc/2046-1402

Access URL: https://doaj.org/article/a2ad8c99320c44fcabe5f745012a071f

Mechanisms and function of de novo DNA methylation in placental development reveals an essential role for DNMT3B

Authors: Simon Andrews, Christel Krueger, Maravillas Mellado-Lopez, Myriam Hemberger, Wendy Dean, Vicente Perez-Garcia, Courtney W. Hanna

Source: Nature Communications, Vol 14, Iss 1, Pp 1-12 (2023)

Subject Terms: Science

File Description: electronic resource

Relation: https://doaj.org/toc/2041-1723

Access URL: https://doaj.org/article/01d5556441ef4bbcbc1a30a3c4fa2e0a

Widespread reorganisation of pluripotent factor binding and gene regulatory interactions between human pluripotent states

Authors: Peter Chovanec, Amanda J. Collier, Christel Krueger, Csilla Várnai, Claudia I. Semprich, Stefan Schoenfelder, Anne E. Corcoran, Peter J. Rugg-Gunn

Source: Nature Communications, Vol 12, Iss 1, Pp 1-18 (2021)

Subject Terms: Science

File Description: electronic resource

Relation: https://doaj.org/toc/2041-1723

Access URL: https://doaj.org/article/7b14988f9bbd452bb5b113c07a446d36

Librarian: A quality control tool to analyse sequencing library compositions [version 1; peer review: 1 approved, 2 approved with reservations]

Authors: Caroline Gaud, Simon Andrews, Kartavya Vashishtha, Christel Krueger

Source: F1000Research, Vol 11 (2022)

Subject Terms: high throughput sequencing, quality control, sequencing libraries, FastQ, base composition, eng, Medicine, Science

File Description: electronic resource

Relation: https://f1000research.com/articles/11-1122/v1; https://doaj.org/toc/2046-1402

Access URL: https://doaj.org/article/387e1195872548418cdf2665a36f0bb7

TET3 prevents terminal differentiation of adult NSCs by a non-catalytic action at Snrpn

Authors: Raquel Montalbán-Loro, Anna Lozano-Ureña, Mitsuteru Ito, Christel Krueger, Wolf Reik, Anne C. Ferguson-Smith, Sacri R. Ferrón

Source: Nature Communications, Vol 10, Iss 1, Pp 1-14 (2019)

Subject Terms: Science

File Description: electronic resource

Relation: https://doaj.org/toc/2041-1723

Access URL: https://doaj.org/article/6a16a9a8341a4206bf85aaf5f9a6ae31

TGFβ signalling is required to maintain pluripotency of human naïve pluripotent stem cells

Authors: Anna Osnato, Stephanie Brown, Christel Krueger, Simon Andrews, Amanda J Collier, Shota Nakanoh, Mariana Quiroga Londoño, Brandon T Wesley, Daniele Muraro, A Sophie Brumm, Kathy K Niakan, Ludovic Vallier, Daniel Ortmann, Peter J Rugg-Gunn

Source: eLife, Vol 10 (2021)

Subject Terms: pluripotent stem cells, embryonic stem cells, gene regulation, Medicine, Science, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://elifesciences.org/articles/67259; https://doaj.org/toc/2050-084X

Access URL: https://doaj.org/article/477038968eb04a52a24c1167301fe0f5

Rejuvenating conventional dendritic cells and T follicular helper cell formation after vaccination

Authors: Marisa Stebegg, Alexandre Bignon, Danika Lea Hill, Alyssa Silva-Cayetano, Christel Krueger, Ine Vanderleyden, Silvia Innocentin, Louis Boon, Jiong Wang, Martin S Zand, James Dooley, Jonathan Clark, Adrian Liston, Edward Carr, Michelle A Linterman

Source: eLife, Vol 9 (2020)

Subject Terms: germinal centre response, ageing, t follicular helper cells, dendritic cells, Medicine, Science, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://elifesciences.org/articles/52473; https://doaj.org/toc/2050-084X

Access URL: https://doaj.org/article/6e557012f65f4b2383953252e3bddeca

MERVL/Zscan4 Network Activation Results in Transient Genome-wide DNA Demethylation of mESCs

Authors: Mélanie A. Eckersley-Maslin, Valentine Svensson, Christel Krueger, Thomas M. Stubbs, Pascal Giehr, Felix Krueger, Ricardo J. Miragaia, Charalampos Kyriakopoulos, Rebecca V. Berrens, Inês Milagre, Jörn Walter, Sarah A. Teichmann, Wolf Reik

Source: Cell Reports, Vol 17, Iss 1, Pp 179-192 (2016)

Subject Terms: Zscan4, MERVL, endogenous retrovirus, embryonic stem cell, DNA methylation, imprint, preimplantation, reprogramming, chromatin, Biology (General), QH301-705.5

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S2211124716311962; https://doaj.org/toc/2211-1247

Access URL: https://doaj.org/article/feffc699cc1445659a80967f50cbb71b

Tri-methylation of histone H3 lysine 4 facilitates gene expression in ageing cells

Authors: Cristina Cruz, Monica Della Rosa, Christel Krueger, Qian Gao, Dorottya Horkai, Michelle King, Lucy Field, Jonathan Houseley

Source: eLife, Vol 7 (2018)

Subject Terms: histone, methylation, ageing, COMPASS, gene expression, Medicine, Science, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://elifesciences.org/articles/34081; https://doaj.org/toc/2050-084X

Access URL: https://doaj.org/article/3bf485359dfa48f1bc43f2ea616feefb

Tetracycline derivatives: alternative effectors for Tet transregulators

Authors: Christel Krueger, Klaus Pfleiderer, Wolfgang Hillen, Christian Berens

Source: BioTechniques, Vol 37, Iss 4, Pp 546-550 (2004)

Subject Terms: Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://doaj.org/toc/0736-6205; https://doaj.org/toc/1940-9818

Access URL: https://doaj.org/article/c0ba48336d974821b120aedf4a7e854c

Pairing of homologous regions in the mouse genome is associated with transcription but not imprinting status.

Authors: Christel Krueger, Michelle R King, Felix Krueger, Miguel R Branco, Cameron S Osborne, Kathy K Niakan, Michael J Higgins, Wolf Reik

Source: PLoS ONE, Vol 7, Iss 7, p e38983 (2012)

Subject Terms: Medicine, Science

File Description: electronic resource

Relation: http://europepmc.org/articles/PMC3389011?pdf=render; https://doaj.org/toc/1932-6203

Access URL: https://doaj.org/article/5a6cb25828564866ad2bf47bfb7b4369

Cohesin is required for higher-order chromatin conformation at the imprinted IGF2-H19 locus.

Authors: Raffaella Nativio, Kerstin S Wendt, Yoko Ito, Joanna E Huddleston, Santiago Uribe-Lewis, Kathryn Woodfine, Christel Krueger, Wolf Reik, Jan-Michael Peters, Adele Murrell

Source: PLoS Genetics, Vol 5, Iss 11, p e1000739 (2009)

Subject Terms: Genetics, QH426-470

File Description: electronic resource

Relation: http://europepmc.org/articles/PMC2776306?pdf=render; https://doaj.org/toc/1553-7390; https://doaj.org/toc/1553-7404

Access URL: https://doaj.org/article/7bab4f849de8447fa01d874ef1e88ef8

Robust 3D DNA FISH Using Directly Labeled Probes

Authors: Daniel J. Bolland, author¹, Michelle R. King, author², Wolf Reik, author^{2, 3}, Anne E. Corcoran, author¹, Christel Krueger, author²

Source: Journal of Visualized Experiments. (78)

Availability: http://www.jove.com/video/50587