kCSD-python, reliable current source density estimation with quality control.

Authors: Chintaluri, Chaitanya¹ (AUTHOR), Bejtka, Marta¹ (AUTHOR), Średniawa, Władysław¹ (AUTHOR), Czerwiński, Michał¹ (AUTHOR), Dzik, Jakub M.¹ (AUTHOR), Jędrzejewska-Szmek, Joanna¹ (AUTHOR), Wójcik, Daniel K.¹ (AUTHOR) d.wojcik@nencki.edu.pl

Source: PLoS Computational Biology. 3/14/2024, Vol. 20 Issue 3, p1-23. 23p.

Subject Terms: *DENSITY currents, *ELECTRIC potential, *ELECTRIC wire, *DEEP learning, *ELECTRIC wiring, *ELECTRIC fields, *WORKFLOW, *QUALITY control

What we can and what we cannot see with extracellular multielectrodes.

Authors: Chintaluri, Chaitanya^1,2 (AUTHOR), Bejtka, Marta¹ (AUTHOR), Średniawa, Władysław^1,3 (AUTHOR), Czerwiński, Michał¹ (AUTHOR), Dzik, Jakub M.¹ (AUTHOR), Jędrzejewska-Szmek, Joanna¹ (AUTHOR), Kondrakiewicz, Kacper⁴ (AUTHOR), Kublik, Ewa⁴ (AUTHOR), Wójcik, Daniel K.¹ (AUTHOR) d.wojcik@nencki.edu.pl

Source: PLoS Computational Biology. 5/14/2021, Vol. 17 Issue 5, p1-20. 20p. 6 Graphs.

Subject Terms: *BRAIN physiology, *EVOKED potentials (Electrophysiology), *FUNCTION spaces, *CURRENT distribution, *STREAM channelization, *BRAIN diseases

Metabolically regulated spiking could serve neuronal energy homeostasis and protect from reactive oxygen species.

Authors: Chintaluri, Chaitanya^1,2 ccluri@gmail.com, Vogels, Tim P.¹

Source: Proceedings of the National Academy of Sciences of the United States of America. 11/28/2023, Vol. 120 Issue 48, p1-23. 34p.

Subject Terms: *REACTIVE oxygen species, *POTASSIUM channels, *HOMEOSTASIS, *ADENOSINE diphosphate, *ADENOSINE triphosphate

Training deep neural density estimators to identify mechanistic models of neural dynamics.

Authors: Gonçalves, Pedro J., Lueckmann, Jan-Matthis, Deistler, Michael, Nonnenmacher, Marcel, Öcal, Kaan, Bassetto, Giacomo, Chintaluri, Chaitanya, Podlaski, William F., Haddad, Sara A., Vogels, Tim P., Greenberg, David S., Macke, Jakob H.

Source: eLife; 10/22/2020, p1-45, 45p

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Corrected Four-Sphere Head Model for EEG Signals.

Authors: Næss, Solveig, Chintaluri, Chaitanya, Ness, Torbjørn V., Dale, Anders M., Einevoll, Gaute T., Wójcik, Daniel K.

Source: Frontiers in Human Neuroscience; 10/18/2017, p1-7, 7p

Subject Terms: ELECTROENCEPHALOGRAPHY, BRAIN research, NEUROLOGY, BRAIN imaging, CEREBROSPINAL fluid otorrhea

25th Annual Computational Neuroscience Meeting: CNS-2016

Authors: Sharpee, Tatyana O., Destexhe, Alain, Kawato, Mitsuo, Sekulić, Vladislav, Skinner, Frances K., Wójcik, Daniel K., Chintaluri, Chaitanya, Cserpán, Dorottya, Somogyvári, Zoltán, Kim, Jae Kyoung, Kilpatrick, Zachary P., Bennett, Matthew R., Josić, Kresimir, Elices, Irene, Arroyo, David, Levi, Rafael, Rodriguez, Francisco B., Varona, Pablo, Hwang, Eunjin, Kim, Bowon, Han, Hio-Been, Kim, Tae, Choi, Jee Hyun, Rankin, James, Popp, Pamela Osborn, Rinzel, John, Tabas, Alejandro, Rupp, André, Balaguer-Ballester, Emili, Maturana, Matias I., Grayden, David B., Cloherty, Shaun L., Kameneva, Tatiana, Ibbotson, Michael R., Meffin, Hamish, Koren, Veronika, Lochmann, Timm, Dragoi, Valentin, Obermayer, Klaus, Psarrou, Maria, Schilstra, Maria, Davey, Neil, Torben-Nielsen, Benjamin, Steuber, Volker, Ju, Huiwen, Yu, Jiao, Hines, Michael L., Chen, Liang, Yu, Yuguo, Kim, Jimin, Leahy, Will, Shlizerman, Eli, Birgiolas, Justas, Gerkin, Richard C., Crook, Sharon M., Viriyopase, Atthaphon, Memmesheimer, Raoul-Martin, Gielen, Stan, Dabaghian, Yuri, DeVito, Justin, Perotti, Luca, Kim, Anmo J., Fenk, Lisa M., Cheng, Cheng, Maimon, Gaby, Zhao, Chang, Widmer, Yves, Sprecher, Simon, Senn, Walter, Halnes, Geir, Mäki-Marttunen, Tuomo, Keller, Daniel, Pettersen, Klas H., Andreassen, Ole A., Einevoll, Gaute T., Yamada, Yasunori, Steyn-Ross, Moira L., Alistair Steyn-Ross, D., Mejias, Jorge F., Murray, John D., Kennedy, Henry, Wang, Xiao-Jing, Kruscha, Alexandra, Grewe, Jan, Benda, Jan, Lindner, Benjamin, Badel, Laurent, Ohta, Kazumi, Tsuchimoto, Yoshiko, Kazama, Hokto, Kahng, B., Tam, Nicoladie D., Pollonini, Luca, Zouridakis, George, Soh, Jaehyun, Kim, DaeEun, Yoo, Minsu, Palmer, S. E., Culmone, Viviana, Bojak, Ingo, Ferrario, Andrea, Merrison-Hort, Robert, Borisyuk, Roman, Kim, Chang Sub, Tezuka, Taro, Joo, Pangyu, Rho, Young-Ah, Burton, Shawn D., Bard Ermentrout, G., Jeong, Jaeseung, Urban, Nathaniel N., Marsalek, Petr, Kim, Hoon-Hee, Moon, Seok-hyun, Lee, Do-won, Lee, Sung-beom, Lee, Ji-yong, Molkov, Yaroslav I., Hamade, Khaldoun, Teka, Wondimu, Barnett, William H., Kim, Taegyo, Markin, Sergey, Rybak, Ilya A., Forro, Csaba, Dermutz, Harald, Demkó, László, Vörös, János, Babichev, Andrey, Huang, Haiping, Verduzco-Flores, Sergio, Dos Santos, Filipa, Andras, Peter, Metzner, Christoph, Schweikard, Achim, Zurowski, Bartosz, Roach, James P., Sander, Leonard M., Zochowski, Michal R., Skilling, Quinton M., Ognjanovski, Nicolette, Aton, Sara J., Zochowski, Michal, Wang, Sheng-Jun, Ouyang, Guang, Guang, Jing, Zhang, Mingsha, Michael Wong, K. Y., Zhou, Changsong, Robinson, Peter A., Sanz-Leon, Paula, Drysdale, Peter M., Fung, Felix, Abeysuriya, Romesh G., Rennie, Chris J., Zhao, Xuelong, Choe, Yoonsuck, Yang, Huei-Fang, Mi, Yuanyuan, Lin, Xiaohan, Wu, Si, Liedtke, Joscha, Schottdorf, Manuel, Wolf, Fred, Yamamura, Yoriko, Wickens, Jeffery R., Rumbell, Timothy, Ramsey, Julia, Reyes, Amy, Draguljić, Danel, Hof, Patrick R., Luebke, Jennifer, Weaver, Christina M., He, Hu, Yang, Xu, Ma, Hailin, Xu, Zhiheng, Wang, Yuzhe, Baek, Kwangyeol, Morris, Laurel S., Kundu, Prantik, Voon, Valerie, Agnes, Everton J., Vogels, Tim P., Podlaski, William F., Giese, Martin, Kuravi, Pradeep, Vogels, Rufin, Seeholzer, Alexander, Podlaski, William, Ranjan, Rajnish, Vogels, Tim, Torres, Joaquin J., Baroni, Fabiano, Latorre, Roberto, Gips, Bart, Lowet, Eric, Roberts, Mark J., de Weerd, Peter, Jensen, Ole, van der Eerden, Jan, Goodarzinick, Abdorreza, Niry, Mohammad D., Valizadeh, Alireza, Pariz, Aref, Parsi, Shervin S., Warburton, Julia M., Marucci, Lucia, Tamagnini, Francesco, Brown, Jon, Tsaneva-Atanasova, Krasimira, Kleberg, Florence I., Triesch, Jochen, Moezzi, Bahar, Iannella, Nicolangelo, Schaworonkow, Natalie, Plogmacher, Lukas, Goldsworthy, Mitchell R., Hordacre, Brenton, McDonnell, Mark D., Ridding, Michael C., Zapotocky, Martin, Smit, Daniel, Fouquet, Coralie, Trembleau, Alain, Dasgupta, Sakyasingha, Nishikawa, Isao, Aihara, Kazuyuki, Toyoizumi, Taro, Robb, Daniel T., Mellen, Nick, Toporikova, Natalia, Tang, Rongxiang, Tang, Yi-Yuan, Liang, Guangsheng, Kiser, Seth A., Howard, James H., Goncharenko, Julia, Voronenko, Sergej O., Ahamed, Tosif, Stephens, Greg, Yger, Pierre, Lefebvre, Baptiste, Spampinato, Giulia Lia Beatrice, Esposito, Elric, et Olivier Marre, Marcel Stimberg, Choi, Hansol, Song, Min-Ho, Chung, SueYeon, Lee, Dan D., Sompolinsky, Haim, Phillips, Ryan S., Smith, Jeffrey, Chatzikalymniou, Alexandra Pierri, Ferguson, Katie, Alex Cayco Gajic, N., Clopath, Claudia, Angus Silver, R., Gleeson, Padraig, Marin, Boris, Sadeh, Sadra, Quintana, Adrian, Cantarelli, Matteo, Dura-Bernal, Salvador, Lytton, William W., Davison, Andrew, Li, Luozheng, Zhang, Wenhao, Wang, Dahui, Song, Youngjo, Park, Sol, Choi, Ilhwan, Shin, Hee-sup, Choi, Hannah, Pasupathy, Anitha, Shea-Brown, Eric, Huh, Dongsung, Sejnowski, Terrence J., Vogt, Simon M., Kumar, Arvind, Schmidt, Robert, Van Wert, Stephen, Schiff, Steven J., Veale, Richard, Scheutz, Matthias, Lee, Sang Wan, Gallinaro, Júlia, Rotter, Stefan, Rubchinsky, Leonid L., Cheung, Chung Ching, Ratnadurai-Giridharan, Shivakeshavan, Shomali, Safura Rashid, Ahmadabadi, Majid Nili, Shimazaki, Hideaki, Nader Rasuli, S., Zhao, Xiaochen, Rasch, Malte J., Wilting, Jens, Priesemann, Viola, Levina, Anna, Rudelt, Lucas, Lizier, Joseph T., Spinney, Richard E., Rubinov, Mikail, Wibral, Michael, Bak, Ji Hyun, Pillow, Jonathan, Zaho, Yuan, Park, Il Memming, Kang, Jiyoung, Park, Hae-Jeong, Jang, Jaeson, Paik, Se-Bum, Choi, Woochul, Lee, Changju, Song, Min, Lee, Hyeonsu, Park, Youngjin, Yilmaz, Ergin, Baysal, Veli, Ozer, Mahmut, Saska, Daniel, Nowotny, Thomas, Chan, Ho Ka, Diamond, Alan, Herrmann, Christoph S., Murray, Micah M., Ionta, Silvio, Hutt, Axel, Lefebvre, Jérémie, Weidel, Philipp, Duarte, Renato, Morrison, Abigail, Lee, Jung H., Iyer, Ramakrishnan, Mihalas, Stefan, Koch, Christof, Petrovici, Mihai A., Leng, Luziwei, Breitwieser, Oliver, Stöckel, David, Bytschok, Ilja, Martel, Roman, Bill, Johannes, Schemmel, Johannes, Meier, Karlheinz, Esler, Timothy B., Burkitt, Anthony N., Kerr, Robert R., Tahayori, Bahman, Nolte, Max, Reimann, Michael W., Muller, Eilif, Markram, Henry, Parziale, Antonio, Senatore, Rosa, Marcelli, Angelo, Skiker, K., Maouene, M., Neymotin, Samuel A., Seidenstein, Alexandra, Lakatos, Peter, Sanger, Terence D., Menzies, Rosemary J., McLauchlan, Campbell, van Albada, Sacha J., Kedziora, David J., Neymotin, Samuel, Kerr, Cliff C., Suter, Benjamin A., Shepherd, Gordon M. G., Ryu, Juhyoung, Lee, Sang-Hun, Lee, Joonwon, Lee, Hyang Jung, Lim, Daeseob, Wang, Jisung, Lee, Heonsoo, Jung, Nam, Anh Quang, Le, Maeng, Seung Eun, Lee, Tae Ho, Lee, Jae Woo, Park, Chang-hyun, Ahn, Sora, Moon, Jangsup, Choi, Yun Seo, Kim, Juhee, Jun, Sang Beom, Lee, Seungjun, Lee, Hyang Woon, Jo, Sumin, Jun, Eunji, Yu, Suin, Goetze, Felix, Lai, Pik-Yin, Kim, Seonghyun, Kwag, Jeehyun, Jang, Hyun Jae, Filipović, Marko, Reig, Ramon, Aertsen, Ad, Silberberg, Gilad, Bachmann, Claudia, Buttler, Simone, Dillen, Kim, Fink, Gereon R., Kukolja, Juraj, Kepple, Daniel, Giaffar, Hamza, Rinberg, Dima, Shea, Steven, Koulakov, Alex, Bahuguna, Jyotika, Tetzlaff, Tom, Kotaleski, Jeanette Hellgren, Kunze, Tim, Peterson, Andre, Knösche, Thomas, Kim, Minjung, Kim, Hojeong, Park, Ji Sung, Yeon, Ji Won, Kim, Sung-Phil, Kang, Jae-Hwan, Lee, Chungho, Spiegler, Andreas, Petkoski, Spase, Palva, Matias J., Jirsa, Viktor K., Saggio, Maria L., Siep, Silvan F., Stacey, William C., Bernar, Christophe, Choung, Oh-hyeon, Jeong, Yong, Lee, Yong-il, Kim, Su Hyun, Jeong, Mir, Lee, Jeungmin, Kwon, Jaehyung, Kralik, Jerald D., Jahng, Jaehwan, Hwang, Dong-Uk, Kwon, Jae-Hyung, Park, Sang-Min, Kim, Seongkyun, Kim, Hyoungkyu, Kim, Pyeong Soo, Yoon, Sangsup, Lim, Sewoong, Park, Choongseok, Miller, Thomas, Clements, Katie, Ahn, Sungwoo, Ji, Eoon Hye, Issa, Fadi A., Baek, JeongHun, Oba, Shigeyuki, Yoshimoto, Junichiro, Doya, Kenji, Ishii, Shin, Mosqueiro, Thiago S., Strube-Bloss, Martin F., Smith, Brian, Huerta, Ramon, Hadrava, Michal, Hlinka, Jaroslav, Bos, Hannah, Helias, Moritz, Welzig, Charles M., Harper, Zachary J., Kim, Won Sup, Shin, In-Seob, Baek, Hyeon-Man, Han, Seung Kee, Richter, René, Vitay, Julien, Beuth, Frederick, Hamker, Fred H., Toppin, Kelly, Guo, Yixin, Graham, Bruce P., Kale, Penelope J., Gollo, Leonardo L., Stern, Merav, Abbott, L. F., Fedorov, Leonid A., Giese, Martin A., Ardestani, Mohammad Hovaidi, Faraji, Mohammad Javad, Preuschoff, Kerstin, Gerstner, Wulfram, van Gendt, Margriet J., Briaire, Jeroen J., Kalkman, Randy K., Frijns, Johan H. M., Lee, Won Hee, Frangou, Sophia, Fulcher, Ben D., Tran, Patricia H. P., Fornito, Alex, Gliske, Stephen V., Lim, Eugene, Holman, Katherine A., Fink, Christian G., Kim, Jinseop S., Mu, Shang, Briggman, Kevin L., Sebastian Seung, H., Wegener, Detlef, Bohnenkamp, Lisa, Ernst, Udo A., Devor, Anna, Dale, Anders M., Lines, Glenn T., Edwards, Andy, Tveito, Aslak, Hagen, Espen, Senk, Johanna, Diesmann, Markus, Schmidt, Maximilian, Bakker, Rembrandt, Shen, Kelly, Bezgin, Gleb, Hilgetag, Claus-Christian, van Albada, Sacha Jennifer, Sun, Haoqi, Sourina, Olga, Huang, Guang-Bin, Klanner, Felix, Denk, Cornelia, Glomb, Katharina, Ponce-Alvarez, Adrián, Gilson, Matthieu, Ritter, Petra, Deco, Gustavo, Witek, Maria A. G., Clarke, Eric F., Hansen, Mads, Wallentin, Mikkel, Kringelbach, Morten L., Vuust, Peter, Klingbeil, Guido, De Schutter, Erik, Chen, Weiliang, Zang, Yunliang, Hong, Sungho, Takashima, Akira, Zamora, Criseida, Gallimore, Andrew R., Goldschmidt, Dennis, Manoonpong, Poramate, Karoly, Philippa J., Freestone, Dean R., Soundry, Daniel, Kuhlmann, Levin, Paninski, Liam, Cook, Mark, Lee, Jaejin, Fishman, Yonatan I., Cohen, Yale E., Roberts, James A., Cocchi, Luca, Sweeney, Yann, Lee, Soohyun, Jung, Woo-Sung, Kim, Youngsoo, Jung, Younginha, Song, Yoon-Kyu, Chavane, Frédéric, Soman, Karthik, Muralidharan, Vignesh, Srinivasa Chakravarthy, V., Shivkumar, Sabyasachi, Mandali, Alekhya, Pragathi Priyadharsini, B., Mehta, Hima, Davey, Catherine E., Brinkman, Braden A. W., Kekona, Tyler, Rieke, Fred, Buice, Michael, De Pittà, Maurizio, Berry, Hugues, Brunel, Nicolas, Breakspear, Michael, Marsat, Gary, Drew, Jordan, Chapman, Phillip D., Daly, Kevin C., Bradle, Samual P., Seo, Sat Byul, Su, Jianzhong, Kavalali, Ege T., Blackwell, Justin, Shiau, LieJune, Buhry, Laure, Basnayake, Kanishka, Lee, Sue-Hyun, Levy, Brandon A., Baker, Chris I., Leleu, Timothée, Philips, Ryan T., Chhabria, Karishma, McKenna, James, Brown, Ritchie, McCarley, Robert William, Jacobs, Heidi

Source: Sharpee, T. O., A. Destexhe, M. Kawato, V. Sekulić, F. K. Skinner, D. K. Wójcik, C. Chintaluri, et al. 2016. “25th Annual Computational Neuroscience Meeting: CNS-2016.” BMC Neuroscience 17 (Suppl 1): 54. doi:10.1186/s12868-016-0283-6. http://dx.doi.org/10.1186/s12868-016-0283-6.

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Relation: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC5001212/pdf/; BMC Neuroscience

Access URL: http://nrs.harvard.edu/urn-3:HUL.InstRepos:29407731