The paradoxical nature of easily improvable evidence

Authors: Chikina, Maria, Pegden, Wesley

Subject Terms: Statistics - Other Statistics, 62F15

Access URL: http://arxiv.org/abs/2205.14016

Best holdout assessment is sufficient for cancer transcriptomic model selection

Authors: Crawford, Jake ¹, Chikina, Maria ², Greene, Casey S. ^{3, 4, 5, ∗}

Source: In Patterns 13 December 2024 5(12)

A note on sampling biases in the Bangladesh mask trial

Authors: Chikina, Maria, Pegden, Wesley, Recht, Benjamin

Subject Terms: Statistics - Applications

Access URL: http://arxiv.org/abs/2112.01296

Quick and effective approximation of in silico saturation mutagenesis experiments with first-order taylor expansion

Authors: Sasse, Alexander ¹, Chikina, Maria ^{2, ∗}, Mostafavi, Sara ^{1, 3, 4, ∗∗}

Source: In iScience 20 September 2024 27(9)

Molecular adaptations in response to exercise training are associated with tissue-specific transcriptomic and epigenomic signatures

Authors: Adkins, Joshua N., Almagro Armenteros, Jose Juan, Ashley, Euan, Bae, Dam, Bamman, Marcas, Bararpour, Nasim, Bennett, Alexis, Bergman, Bryan C., Bessesen, Daniel H., Bodine, Sue C., Buford, Thomas W., Chambers, Toby L., Chavez, Clarisa, Cortes, Tiffany, Cutter, Gary, Espinoza, Sara, Fernández, Facundo M., Gagne, Nicole, Gaul, David A., Goodpaster, Bret H., Hung, Chia-Jui, Jackson, Bailey E., Jankowski, Catherine M., Jin, Christopher A., Kohrt, Wendy M., Kramer, Kyle S., Lester, Bridget, Lira, Ana K., May, Sandy, Marjanovic, Nada, Melanson, Edward L., Moore, Samuel G., Moreau, Kerrie L., Musi, Nicolas, Nachum, Daniel, Nudelman, German, Pahor, Marco, Patel, Darpan, Piehowski, Paul D., Qian, Wei-Jun, Rasmussen, Blake B., Rirak, Stas, Rooney, Jessica L., Sanford, James A., Savage, Evan M., Schauer, Irene E., Serra, Monica, Stowe, Cynthia L., Thalacker-Mercer, Anna, Trappe, Todd A., Trappe, Scott, Vetr, Nikolai G., Volpi, Elena, Wheeler, Matthew T., Wu, Si, Zebarjadi, Navid, Zhen, Jimmy, Nair, Venugopalan D., Pincas, Hanna, Smith, Gregory R., Zaslavsky, Elena, Ge, Yongchao, Amper, Mary Anne S., Vasoya, Mital, Chikina, Maria, Sun, Yifei, Raja, Archana Natarajan, Mao, Weiguang, Gay, Nicole R., Esser, Karyn A., Smith, Kevin S., Zhao, Bingqing, Wiel, Laurens, Singh, Aditya, Lindholm, Malene E., Amar, David, Montgomery, Stephen, Snyder, Michael P., Walsh, Martin J., Sealfon, Stuart C.

Source: In Cell Genomics 12 June 2024 4(6)

Failure of monotonicity in epidemic models

Authors: Chikina, Maria, Pegden, Wesley

Subject Terms: Quantitative Biology - Populations and Evolution

Access URL: http://arxiv.org/abs/2004.15018

Modeling strict age-targeted mitigation strategies for COVID-19

Authors: Chikina, Maria, Pegden, Wesley

Subject Terms: Quantitative Biology - Populations and Evolution

Access URL: http://arxiv.org/abs/2004.04144

Separating effect from significance in Markov chain tests

Authors: Chikina, Maria, Frieze, Alan, Mattingly, Jonathan, Pegden, Wesley

Subject Terms: Mathematics - Probability, Mathematics - Statistics Theory

Access URL: http://arxiv.org/abs/1904.04052

Multi-objective optimization identifies a specific and interpretable COVID-19 host response signature

Authors: Cappuccio, Antonio, Chawla, Daniel G., Chen, Xi, Rubenstein, Aliza B., Cheng, Wan Sze, Mao, Weiguang, Burke, Thomas W., Tsalik, Ephraim L., Petzold, Elizabeth, Henao, Ricardo, McClain, Micah T., Woods, Christopher W., Chikina, Maria, Troyanskaya, Olga G., Sealfon, Stuart C., Kleinstein, Steven H., Zaslavsky, Elena

Source: In Cell Systems 21 December 2022 13(12):989-1001

Phase Conductor on Multi-layered Attentions for Machine Comprehension

Authors: Liu, Rui, Wei, Wei, Mao, Weiguang, Chikina, Maria

Subject Terms: Computer Science - Computation and Language

Access URL: http://arxiv.org/abs/1710.10504

An analysis of the Act 43 Wisconsin Assembly district map using the $\sqrt{\varepsilon}$ test

Authors: Chikina, Maria, Frieze, Alan, Pegden, Wesley

Subject Terms: Statistics - Applications

Access URL: http://arxiv.org/abs/1708.09852

Individual variation in susceptibility or exposure to SARS-CoV-2 lowers the herd immunity threshold

Authors: Gomes, M. Gabriela M., Ferreira, Marcelo U., Corder, Rodrigo M., King, Jessica G., Souto-Maior, Caetano, Penha-Gonçalves, Carlos, Gonçalves, Guilherme, Chikina, Maria, Pegden, Wesley, Aguas, Ricardo

Source: In Journal of Theoretical Biology 7 May 2022 540

Assessing significance in a Markov chain without mixing

Authors: Chikina, Maria, Frieze, Alan, Pegden, Wesley

Subject Terms: Mathematics - Probability, Statistics - Methodology

Access URL: http://arxiv.org/abs/1608.02014

Liver Is a Generative Site for the B Cell Response to Ehrlichia muris

Authors: Trivedi, Nikita, Weisel, Florian, Smita, Shuchi, Joachim, Stephen, Kader, Muhamuda, Radhakrishnan, Aditya, Clouser, Chris, Rosenfeld, Aaron M., Chikina, Maria, Vigneault, Francois, Hershberg, Uri, Ismail, Nahed, Shlomchik, Mark Jay

Source: In Immunity 17 December 2019 51(6):1088-1101

Treg Cells Promote the SREBP1-Dependent Metabolic Fitness of Tumor-Promoting Macrophages via Repression of CD8+ T Cell-Derived Interferon-γ

Authors: Liu, Chang, Chikina, Maria, Deshpande, Rahul, Menk, Ashley V., Wang, Ting, Tabib, Tracy, Brunazzi, Erin A., Vignali, Kate M., Sun, Ming, Stolz, Donna B., Lafyatis, Robert A., Chen, Wei, Delgoffe, Greg M., Workman, Creg J., Wendell, Stacy G., Vignali, Dario A.A.

Source: In Immunity 20 August 2019 51(2):381-397

RERconverge Expansion: Using Relative Evolutionary Rates to Study Complex Categorical Trait Evolution.

Authors: Redlich, Ruby, Kowalczyk, Amanda, Tene, Michael, Sestili, Heather H, Foley, Kathleen, Saputra, Elysia, Clark, Nathan, Chikina, Maria, Meyer, Wynn K, Pfenning, Andreas R

Source: Molecular Biology & Evolution; Nov2024, Vol. 41 Issue 11, p1-17, 17p

Subject Terms: MOLECULAR evolution, CONVERGENT evolution, GENOMICS, NUMBERS of species, COMPARATIVE method

A hybrid constrained continuous optimization approach for optimal causal discovery from biological data.

Authors: Zhu, Yuehua^1,2, Benos, Panayiotis V³, Chikina, Maria¹, mchikina@pitt.edu

Source: Bioinformatics; 2024 Supplement, Vol. 40, pii87-ii97, 11p

Ancient convergent losses of Paraoxonase 1 yield potential risks for modern marine mammals

Authors: Meyer, Wynn K., Jamison, Jerrica, Richter, Rebecca, Woods, Stacy E., Partha, Raghavendran, Kowalczyk, Amanda, Kronk, Charles, Chikina, Maria, Bonde, Robert K., Crocker, Daniel E., Gaspard, Joseph, Lanyon, Janet M., Marsillach, Judit, Furlong, Clement E., Clark, Nathan L.

Source: Science, 2018 Aug 01. 361(6402), 591-594.

Access URL: https://www.jstor.org/stable/26498143

Hepatocyte-Derived Lipocalin 2 Is a Potential Serum Biomarker Reflecting Tumor Burden in Hepatoblastoma

Authors: Molina, Laura, Bell, Danielle, Tao, Junyan, Preziosi, Morgan, Pradhan-Sundd, Tirthadipa, Singh, Sucha, Poddar, Minakshi, Luo, Jianhua, Ranganathan, Sarangarajan, Chikina, Maria, Monga, Satdarshan P.

Source: In The American Journal of Pathology August 2018 188(8):1895-1909

Re-analysis on the statistical sampling biases of a mask promotion trial in Bangladesh: a statistical replication.

Authors: Chikina, Maria¹ (AUTHOR), Pegden, Wesley² (AUTHOR), Recht, Benjamin³ (AUTHOR) brecht@berkeley.edu

Source: Trials. 9/15/2022, Vol. 23 Issue 1, p1-5. 5p. 2 Diagrams, 2 Graphs.

Subject Terms: *STATISTICAL sampling, *STATISTICAL bias

Geographic Terms: BANGLADESH