Genomic analysis of azithromycin-resistant Salmonella from food animals at slaughter and processing, and retail meats, 2011–2021, United States

Authors: Beilei Ge, Sampa Mukherjee, Cong Li, Lucas B. Harrison, Chih-Hao Hsu, Thu-Thuy Tran, Jean M. Whichard, Uday Dessai, Ruby Singh, Jeffrey M. Gilbert, Errol A. Strain, Patrick F. McDermott, Shaohua Zhao

Source: Microbiology Spectrum, Vol 12, Iss 1 (2024)

Subject Terms: azithromycin, genome, multidrug, mutation, PacBio, plasmid, Microbiology, QR1-502

File Description: electronic resource

Relation: https://doaj.org/toc/2165-0497

Access URL: https://doaj.org/article/fb3505082232465aa0736016a42c6c99

Pathological granuloma fibrosis induced by agar-embedded Mycobacterium abscessus in C57BL/6JNarl mice

Authors: Shiu-Ju Yang, Chih-Hao Hsu, Chi-Yun Lai, Pei-Chu Tsai, Yung-Deng Song, Chang-Ching Yeh, Yih-Yuan Chen, Horng-Yunn Dou

Source: Frontiers in Immunology, Vol 14 (2023)

Subject Terms: pulmonary granuloma diseases, fibrosis, mycobacterium abscessus, hypoxia, immunocompetent mice, Immunologic diseases. Allergy, RC581-607

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fimmu.2023.1277745/full; https://doaj.org/toc/1664-3224

Access URL: https://doaj.org/article/f59c582a334146cb95250de92c246dfc

Geography shapes the genomics and antimicrobial resistance of Salmonella enterica Serovar Enteritidis isolated from humans

Authors: Guojie Cao, Shaohua Zhao, Dai Kuang, Chih-Hao Hsu, Lanlan Yin, Yan Luo, Zhao Chen, Xuebin Xu, Errol Strain, Patrick McDermott, Marc Allard, Eric Brown, Jianghong Meng, Jie Zheng

Source: Scientific Reports, Vol 13, Iss 1, Pp 1-13 (2023)

Subject Terms: Medicine, Science

File Description: electronic resource

Relation: https://doaj.org/toc/2045-2322

Access URL: https://doaj.org/article/6d61134f0e2845ec9f96ff80294354d1

Genotypic and Phenotypic Characterization of Antimicrobial and Heavy Metal Tolerance in Salmonella enterica and Escherichia coli Isolates from Swine Feed Mills

Authors: Carla L. Schwan, Leonardo M. Bastos, Shenia Young, Kelly Domesle, Beilei Ge, Chih-Hao Hsu, Cong Li, Errol Strain, Jessie Vipham, Cassandra Jones, Raghavendra Amachawadi, Tiruvoor G. Nagaraja, Valentina Trinetta

Source: Journal of Food Protection, Vol 86, Iss 8, Pp 100113- (2023)

Subject Terms: E. coli, Heavy metal, Salmonella, Swine feed mills, WGS, AMR, Food processing and manufacture, TP368-456, Nutrition. Foods and food supply, TX341-641

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S0362028X23067972; https://doaj.org/toc/0362-028X

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Development and Application of a Platform for Multidimensional Urban Earthquake Impact Simulation

Authors: Chih-Hao Hsu, Siao-Syun Ke, Tzu-Hsiu Wu

Source: Frontiers in Built Environment, Vol 8 (2022)

Subject Terms: seismic response, multi-scale model, visualization display simulation, long-period earthquake, simulation platform, Engineering (General). Civil engineering (General), TA1-2040, City planning, HT165.5-169.9

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fbuil.2022.938747/full; https://doaj.org/toc/2297-3362

Access URL: https://doaj.org/article/ff363979ace24f0bb73b2e6655122a5d

Long-Read Sequencing Reveals Evolution and Acquisition of Antimicrobial Resistance and Virulence Genes in Salmonella enterica

Authors: Cong Li, Gregory H. Tyson, Chih-Hao Hsu, Lucas Harrison, Errol Strain, Thu-Thuy Tran, Glenn E. Tillman, Uday Dessai, Patrick F. McDermott, Shaohua Zhao

Source: Frontiers in Microbiology, Vol 12 (2021)

Subject Terms: Salmonella, multidrug resistance (MDR), plasmid, Salmonella genomic island (SGI), Salmonella pathogenicity island (SPI), Microbiology, QR1-502

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fmicb.2021.777817/full; https://doaj.org/toc/1664-302X

Access URL: https://doaj.org/article/983a5b831eab436e926cf47ce752851f

Alginate-Capped Silver Nanoparticles as a Potent Anti-mycobacterial Agent Against Mycobacterium tuberculosis

Authors: Cheng-Cheung Chen, Yih-Yuan Chen, Chang-Ching Yeh, Chia-Wei Hsu, Shang-Jie Yu, Chih-Hao Hsu, Ting-Chun Wei, Sin-Ni Ho, Pei-Chu Tsai, Yung-Deng Song, Hui-Ju Yen, Xin-An Chen, Jenn-Jong Young, Chuan-Chung Chuang, Horng-Yunn Dou

Source: Frontiers in Pharmacology, Vol 12 (2021)

Subject Terms: mycobacterium tubeculosis, antimycobacterial agent, MDR TB, dormant TB, silver nanopaiticles, Therapeutics. Pharmacology, RM1-950

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fphar.2021.746496/full; https://doaj.org/toc/1663-9812

Access URL: https://doaj.org/article/8cbd6e4b0df74eb685a41fc17de84b10

Core Genome MLST for Source Attribution of Campylobacter coli

Authors: Lucas Harrison, Sampa Mukherjee, Chih-Hao Hsu, Shenia Young, Errol Strain, Qijing Zhang, Glenn E. Tillman, Cesar Morales, Jovita Haro, Shaohua Zhao

Source: Frontiers in Microbiology, Vol 12 (2021)

Subject Terms: Campylobacter coli, source attribution, cgMLST, food safety, antibiotic resistance, MMD, Microbiology, QR1-502

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fmicb.2021.703890/full; https://doaj.org/toc/1664-302X

Access URL: https://doaj.org/article/9f1077af462149e3b09b4687b0ce16a0

Blockchain of Resource-Efficient Anonymity Protection with Watermarking for IoT Big Data Market

Authors: Chia-Hui Wang, Chih-Hao Hsu

Source: Cryptography, Vol 6, Iss 4, p 49 (2022)

Subject Terms: anonymity, watermark, blockchain, IoT big data market, Technology

File Description: electronic resource

Relation: https://www.mdpi.com/2410-387X/6/4/49; https://doaj.org/toc/2410-387X

Access URL: https://doaj.org/article/20c2dbb39cb540aa92acc6adfa0be17c

Corrigendum: Activation of M1 Macrophages in Response to Recombinant TB Vaccines With Enhanced Antimycobacterial Activity

Authors: Shiu-Ju Yang, Yih-Yuan Chen, Chih-Hao Hsu, Chia-Wei Hsu, Chun-Yu Chang, Jia-Ru Chang, Horng-Yunn Dou

Source: Frontiers in Immunology, Vol 12 (2021)

Subject Terms: recombinant Bacille Calmette–Guérin, Mycobacterium tuberculosis, innate immunity, macrophage, vaccine, Immunologic diseases. Allergy, RC581-607

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fimmu.2021.669616/full; https://doaj.org/toc/1664-3224

Access URL: https://doaj.org/article/771aaad44f1d4356bdbaaf0a9e78d6cc

Activation of M1 Macrophages in Response to Recombinant TB Vaccines With Enhanced Antimycobacterial Activity

Authors: Shiu-Ju Yang, Yih-Yuan Chen, Chih-Hao Hsu, Chia-Wei Hsu, Chun-Yu Chang, Jia-Ru Chang, Horng-Yunn Dou

Source: Frontiers in Immunology, Vol 11 (2020)

Subject Terms: recombinant Bacille Calmette–Guérin, Mycobacterium tuberculosis, innate immunity, macrophage, vaccine, Immunologic diseases. Allergy, RC581-607

File Description: electronic resource

Relation: https://www.frontiersin.org/article/10.3389/fimmu.2020.01298/full; https://doaj.org/toc/1664-3224

Access URL: https://doaj.org/article/1eb6ca9356984559b99887a07aff183a

Enhanced Forward Osmosis Desalination with a Hybrid Ionic Liquid/Hydrogel Thermoresponsive Draw Agent System

Authors: Chih-Hao Hsu, Canghai Ma, Ngoc Bui, Zhuonan Song, Aaron D. Wilson, Robert Kostecki, Kyle M. Diederichsen, Bryan D. McCloskey, Jeffrey J. Urban

Source: ACS Omega, Vol 4, Iss 2, Pp 4296-4303 (2019)

Subject Terms: Chemistry, QD1-999

File Description: electronic resource

Relation: https://doaj.org/toc/2470-1343

Access URL: https://doaj.org/article/6a6d836fc01e4902b075c2e1ca73bf44

Improving Device Characteristics of Dual-Gate IGZO Thin-Film Transistors with Ar–O2 Mixed Plasma Treatment and Rapid Thermal Annealing

Authors: Wei-Sheng Liu, Chih-Hao Hsu, Yu Jiang, Yi-Chun Lai, Hsing-Chun Kuo

Source: Membranes, Vol 12, Iss 1, p 49 (2021)

Subject Terms: indium–gallium–zinc oxide (IGZO), plasma treatment, dual-gate thin-film transistor (DG TFT), Chemical technology, TP1-1185, Chemical engineering, TP155-156

File Description: electronic resource

Relation: https://www.mdpi.com/2077-0375/12/1/49; https://doaj.org/toc/2077-0375

Access URL: https://doaj.org/article/b28ef15f1f7d48b9bf41c960c125be37

Genetic diversity of the Mycobacterium tuberculosis East AfricanâIndian family in three tropical Asian countries

Authors: Yih-Yuan Chen, Jia-Ru Chang, Wei-Feng Huang, Chih-Hao Hsu, Han-Yin Cheng, Jun-Ren Sun, Shu-Chen Kuo, Ih-Jen Su, Ming-Shian Lin, Wei Chen, Horng-Yunn Dou

Source: Journal of Microbiology, Immunology and Infection, Vol 50, Iss 6, Pp 886-892 (2017)

Subject Terms: Microbiology, QR1-502

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S1684118215009093; https://doaj.org/toc/1684-1182

Access URL: https://doaj.org/article/7ee89d9acec043b7b47be1a802fd8f5e

Combining molecular typing and spatial pattern analysis to identify areas of high tuberculosis transmission in a moderate-incidence county in Taiwan

Authors: Yih-Yuan Chen, Jia-Ru Chang, Chih-Da Wu, Yen-Po Yeh, Shiu-Ju Yang, Chih-Hao Hsu, Ming-Ching Lin, Ching-Fang Tsai, Ming-Shian Lin, Ih-Jen Su, Horng-Yunn Dou

Source: Scientific Reports, Vol 7, Iss 1, Pp 1-8 (2017)

Subject Terms: Medicine, Science

File Description: electronic resource

Relation: https://doaj.org/toc/2045-2322

Access URL: https://doaj.org/article/47b58431331c4b0db29d3d7135f253de

Diverse Fluoroquinolone Resistance Plasmids From Retail Meat E. coli in the United States

Authors: Gregory H. Tyson, Cong Li, Chih-Hao Hsu, Sonya Bodeis-Jones, Patrick F. McDermott

Source: Frontiers in Microbiology, Vol 10 (2019)

Subject Terms: PacBio, antimicrobial resistance, Escherichia coli, plasmids, fluoroquinolones, Microbiology, QR1-502

File Description: electronic resource

Relation: https://www.frontiersin.org/article/10.3389/fmicb.2019.02826/full; https://doaj.org/toc/1664-302X

Access URL: https://doaj.org/article/5648309ee35b4f5eba12be9a4ccab9da

Genomic Analysis of Emerging Florfenicol-Resistant Campylobacter coli Isolated from the Cecal Contents of Cattle in the United States

Authors: Shaohua Zhao, Sampa Mukherjee, Chih-Hao Hsu, Shenia Young, Cong Li, Heather Tate, Cesar A. Morales, Jovita Haro, Sutawee Thitaram, Glenn E. Tillman, Uday Dessai, Patrick McDermott

Source: mSphere, Vol 4, Iss 3 (2019)

Subject Terms: Campylobacter, MDR, NARMS, WGS, florfenicol resistance, plasmid, Microbiology, QR1-502

File Description: electronic resource

Relation: https://doaj.org/toc/2379-5042

Access URL: https://doaj.org/article/9286b61598bd42f1b16cfc1334fbbf6b

Core Genome Multilocus Sequence Typing for Food Animal Source Attribution of Human Campylobacter jejuni Infections

Authors: Chih-Hao Hsu, Lucas Harrison, Sampa Mukherjee, Errol Strain, Patrick McDermott, Qijing Zhang, Shaohua Zhao

Source: Pathogens, Vol 9, Iss 7, p 532 (2020)

Subject Terms: cgMLST, Campylobacter jejuni, source attribution, foodborne pathogens, PorA, Medicine

File Description: electronic resource

Relation: https://www.mdpi.com/2076-0817/9/7/532; https://doaj.org/toc/2076-0817

Access URL: https://doaj.org/article/e26523d8995540cc8f38929aad9d8403

OmicCircos: A Simple-to-Use R Package for the Circular Visualization of Multidimensional Omics Data

Authors: Ying Hu, Chunhua Yan, Chih-Hao Hsu, Qing-Rong Chen, Kelvin Niu, George A. Komatsoulis, Daoud Meerzaman

Source: Cancer Informatics, Vol 2014, Iss 13, Pp 13-20 (2014)

Subject Terms: Neoplasms. Tumors. Oncology. Including cancer and carcinogens, RC254-282

File Description: electronic resource

Relation: http://www.la-press.com/omiccircos-a-simple-to-use-r-package-for-the-circular-visualization-of-article-a4036; https://doaj.org/toc/1176-9351

Access URL: https://doaj.org/article/9d4803272cb443688ca1fc85b4352627

Transcriptome Profiling of Pediatric Core Binding Factor AML.

Authors: Chih-Hao Hsu, Cu Nguyen, Chunhua Yan, Rhonda E Ries, Qing-Rong Chen, Ying Hu, Fabiana Ostronoff, Derek L Stirewalt, George Komatsoulis, Shawn Levy, Daoud Meerzaman, Soheil Meshinchi

Source: PLoS ONE, Vol 10, Iss 9, p e0138782 (2015)

Subject Terms: Medicine, Science

File Description: electronic resource

Relation: http://europepmc.org/articles/PMC4580636?pdf=render; https://doaj.org/toc/1932-6203

Access URL: https://doaj.org/article/0ccd298f1af142adbe8d48903b2c58cf