A syntelog-based pan-genome provides insights into rice domestication and de-domestication

Authors: Dongya Wu, Lingjuan Xie, Yanqing Sun, Yujie Huang, Lei Jia, Chenfeng Dong, Enhui Shen, Chu-Yu Ye, Qian Qian, Longjiang Fan

Source: Genome Biology, Vol 24, Iss 1, Pp 1-22 (2023)

Subject Terms: Rice pan-genome, Syntelog, Domestication, De-domestication, Introgression, Biology (General), QH301-705.5, Genetics, QH426-470

File Description: electronic resource

Relation: https://doaj.org/toc/1474-760X

Access URL: https://doaj.org/article/9c0911a2e5d94ecfa860ce942cc74285

Genomic insights into the evolution of Echinochloa species as weed and orphan crop

Authors: Dongya Wu, Enhui Shen, Bowen Jiang, Yu Feng, Wei Tang, Sangting Lao, Lei Jia, Han-Yang Lin, Lingjuan Xie, Xifang Weng, Chenfeng Dong, Qinghong Qian, Feng Lin, Haiming Xu, Huabing Lu, Luan Cutti, Huajun Chen, Shuiguang Deng, Longbiao Guo, Tse-Seng Chuah, Beng-Kah Song, Laura Scarabel, Jie Qiu, Qian-Hao Zhu, Qin Yu, Michael P. Timko, Hirofumi Yamaguchi, Aldo Merotto, Yingxiong Qiu, Kenneth M. Olsen, Longjiang Fan, Chu-Yu Ye

Source: Nature Communications, Vol 13, Iss 1, Pp 1-16 (2022)

Subject Terms: Science

File Description: electronic resource

Relation: https://doaj.org/toc/2041-1723

Access URL: https://doaj.org/article/d0aef33d0a9544a387ac4ac17f8f5ced

The complete chloroplast genome of japonica type weedy rice (Oryza sativa f. spontanea)

Authors: Yiyu Hu, Chenfeng Dong, Chuyu Ye, Longjiang Fan, Wei Tang

Source: Mitochondrial DNA. Part B. Resources, Vol 7, Iss 8, Pp 1418-1420 (2022)

Subject Terms: oryza sativa f. spontanea, chloroplast genome, weedy rice, Genetics, QH426-470

File Description: electronic resource

Relation: https://doaj.org/toc/2380-2359

Access URL: https://doaj.org/article/83c297113ea0497aa25224a405c2fff9

The complete chloroplast genome of weedy rice Oryza sativa f. spontanea

Authors: Chenfeng Dong, Yiyu Hu, Chuyu Ye, Longjiang Fan, Longbiao Guo

Source: Mitochondrial DNA. Part B. Resources, Vol 6, Iss 10, Pp 3016-3017 (2021)

Subject Terms: chloroplast genome, oryza sativa f. spontanea, phylogenetic analysis, Genetics, QH426-470

File Description: electronic resource

Relation: https://doaj.org/toc/2380-2359

Access URL: https://doaj.org/article/8269ddc6fd2f494a93a117bba61e67ab