Correction: Speed variations of bacterial replisomes

Authors: Deepak Bhat, Samuel Hauf, Charles Plessy, Yohei Yokobayashi, Simone Pigolotti

Source: eLife, Vol 12 (2023)

Subject Terms: Medicine, Science, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://elifesciences.org/articles/88685; https://doaj.org/toc/2050-084X

Access URL: https://doaj.org/article/307f782d6e864ff5bf592cd34b5a06ad

Speed variations of bacterial replisomes

Authors: Deepak Bhat, Samuel Hauf, Charles Plessy, Yohei Yokobayashi, Simone Pigolotti

Source: eLife, Vol 11 (2022)

Subject Terms: DNA replication, replication forks, replication completion, Medicine, Science, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://elifesciences.org/articles/75884; https://doaj.org/toc/2050-084X

Access URL: https://doaj.org/article/774447c25a75484a8c8452c614d6a96d

Telomere-to-telomere assembly of the genome of an individual Oikopleura dioica from Okinawa using Nanopore-based sequencing

Authors: Aleksandra Bliznina, Aki Masunaga, Michael J. Mansfield, Yongkai Tan, Andrew W. Liu, Charlotte West, Tanmay Rustagi, Hsiao-Chiao Chien, Saurabh Kumar, Julien Pichon, Charles Plessy, Nicholas M. Luscombe

Source: BMC Genomics, Vol 22, Iss 1, Pp 1-18 (2021)

Subject Terms: Oikopleura dioica, Oxford Nanopore sequencing, Hi-C, Telomere-to-telomere, Chromosome-scale assembly, Single individual, Biotechnology, TP248.13-248.65, Genetics, QH426-470

File Description: electronic resource

Relation: https://doaj.org/toc/1471-2164

Access URL: https://doaj.org/article/6cbd2f5d71814f96a6432ac5d4289d27

Use of Cap Analysis Gene Expression to detect human papillomavirus promoter activity patterns at different disease stages

Authors: Ayumi Taguchi, Kazunori Nagasaka, Charles Plessy, Hiroe Nakamura, Yoshiko Kawata, Sachi Kato, Kosuke Hashimoto, Takeshi Nagamatsu, Katsutoshi Oda, Iwao Kukimoto, Kei Kawana, Piero Carninci, Yutaka Osuga, Tomoyuki Fujii

Source: Scientific Reports, Vol 10, Iss 1, Pp 1-10 (2020)

Subject Terms: Medicine, Science

File Description: electronic resource

Relation: https://doaj.org/toc/2045-2322

Access URL: https://doaj.org/article/41a3aa9d819b4c13a50e13a49fbae023

Automated phenol-chloroform extraction of high molecular weight genomic DNA for use in long-read single-molecule sequencing [version 1; peer review: 2 approved]

Authors: Alejandro Villar-Briones, Andrew W. Liu, Charles Plessy, Nicholas M. Luscombe

Source: F1000Research, Vol 11 (2022)

Subject Terms: Automation, Robotics, Organic Extraction, DNA extraction, Genome Sequencing, eng, Medicine, Science

File Description: electronic resource

Relation: https://f1000research.com/articles/11-240/v1; https://doaj.org/toc/2046-1402

Access URL: https://doaj.org/article/ac30d2bde7d644659bb6ba579a6e8a17

RADICL-seq identifies general and cell type–specific principles of genome-wide RNA-chromatin interactions

Authors: Alessandro Bonetti, Federico Agostini, Ana Maria Suzuki, Kosuke Hashimoto, Giovanni Pascarella, Juliette Gimenez, Leonie Roos, Alex J. Nash, Marco Ghilotti, Christopher J. F. Cameron, Matthew Valentine, Yulia A. Medvedeva, Shuhei Noguchi, Eneritz Agirre, Kaori Kashi, Samudyata, Joachim Luginbühl, Riccardo Cazzoli, Saumya Agrawal, Nicholas M. Luscombe, Mathieu Blanchette, Takeya Kasukawa, Michiel de Hoon, Erik Arner, Boris Lenhard, Charles Plessy, Gonçalo Castelo-Branco, Valerio Orlando, Piero Carninci

Source: Nature Communications, Vol 11, Iss 1, Pp 1-14 (2020)

Subject Terms: Science

File Description: electronic resource

Relation: https://doaj.org/toc/2041-1723

Access URL: https://doaj.org/article/3ee35708eeee438bbb6649cdd0169ea5

Investigation of the hepatic development in the coculture of hiPSCs-derived LSECs and HLCs in a fluidic microenvironment

Authors: Mathieu Danoy, Yannick Tauran, Stephane Poulain, Rachid Jellali, Johanna Bruce, Marjorie Leduc, Morgane Le Gall, Yuta Koui, Hiroshi Arakawa, Francoise Gilard, Bertrand Gakiere, Yukio Kato, Charles Plessy, Taketomo Kido, Atsushi Miyajima, Yasuyuki Sakai, Eric Leclerc

Source: APL Bioengineering, Vol 5, Iss 2, Pp 026104-026104-13 (2021)

Subject Terms: Biotechnology, TP248.13-248.65, Medical technology, R855-855.5

File Description: electronic resource

Relation: https://doaj.org/toc/2473-2877

Access URL: https://doaj.org/article/e70436d4d10a4e2393e6907ba57b1f84

H3S28P Antibody Staining of Okinawan Oikopleura dioica Suggests the Presence of Three Chromosomes [version 2; peer review: 2 approved]

Authors: Andrew W. Liu, Yongkai Tan, Aki Masunaga, Aleksandra Bliznina, Charlotte West, Charles Plessy, Nicholas M. Luscombe

Source: F1000Research, Vol 9 (2021)

Subject Terms: Medicine, Science

File Description: electronic resource

Relation: https://f1000research.com/articles/9-780/v2; https://doaj.org/toc/2046-1402

Access URL: https://doaj.org/article/88a3ccbd811a4e7b871143d4841de22d

C1 CAGE detects transcription start sites and enhancer activity at single-cell resolution

Authors: Tsukasa Kouno, Jonathan Moody, Andrew Tae-Jun Kwon, Youtaro Shibayama, Sachi Kato, Yi Huang, Michael Böttcher, Efthymios Motakis, Mickaël Mendez, Jessica Severin, Joachim Luginbühl, Imad Abugessaisa, Akira Hasegawa, Satoshi Takizawa, Takahiro Arakawa, Masaaki Furuno, Naveen Ramalingam, Jay West, Harukazu Suzuki, Takeya Kasukawa, Timo Lassmann, Chung-Chau Hon, Erik Arner, Piero Carninci, Charles Plessy, Jay W. Shin

Source: Nature Communications, Vol 10, Iss 1, Pp 1-12 (2019)

Subject Terms: Science

File Description: electronic resource

Relation: https://doaj.org/toc/2041-1723

Access URL: https://doaj.org/article/2b223db146cd404e9768769b7c47b35c

Widespread use of the 'ascidian' mitochondrial genetic code in tunicates [version 2; peer review: 2 approved]

Authors: Julien Pichon, Nicholas M. Luscombe, Charles Plessy

Source: F1000Research, Vol 8 (2020)

Subject Terms: Medicine, Science

File Description: electronic resource

Relation: https://f1000research.com/articles/8-2072/v2; https://doaj.org/toc/2046-1402

Access URL: https://doaj.org/article/a79d8ad114924ba3b858d51df7e43df4

Widespread use of the 'ascidian' mitochondrial genetic code in tunicates [version 1; peer review: 2 approved]

Authors: Julien Pichon, Nicholas M. Luscombe, Charles Plessy

Source: F1000Research, Vol 8 (2019)

Subject Terms: Medicine, Science

File Description: electronic resource

Relation: https://f1000research.com/articles/8-2072/v1; https://doaj.org/toc/2046-1402

Access URL: https://doaj.org/article/f27526da2672494e8102e3e38105d4b5

Author Correction: RADICL-seq identifies general and cell type–specific principles of genome-wide RNA-chromatin interactions

Authors: Alessandro Bonetti, Federico Agostini, Ana Maria Suzuki, Kosuke Hashimoto, Giovanni Pascarella, Juliette Gimenez, Leonie Roos, Alex J. Nash, Marco Ghilotti, Christopher J. F. Cameron, Matthew Valentine, Yulia A. Medvedeva, Shuhei Noguchi, Eneritz Agirre, Kaori Kashi, Samudyata, Joachim Luginbühl, Riccardo Cazzoli, Saumya Agrawal, Nicholas M. Luscombe, Mathieu Blanchette, Takeya Kasukawa, Michiel de Hoon, Erik Arner, Boris Lenhard, Charles Plessy, Gonçalo Castelo-Branco, Valerio Orlando, Piero Carninci

Source: Nature Communications, Vol 12, Iss 1, Pp 1-1 (2021)

Subject Terms: Science

File Description: electronic resource

Relation: https://doaj.org/toc/2041-1723

Access URL: https://doaj.org/article/1c6594919e4a4dec9114c20da2fa808b

Targeted reduction of highly abundant transcripts using pseudo-random primers

Authors: Ophélie Arnaud, Sachi Kato, Stéphane Poulain, Charles Plessy

Source: BioTechniques, Vol 60, Iss 4, Pp 169-174 (2016)

Subject Terms: nanoCAGE, high-throughput sequencing, rRNA, undesirable sequences, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://doaj.org/toc/0736-6205; https://doaj.org/toc/1940-9818

Access URL: https://doaj.org/article/c6c52c4de06c41d1b26b236d4def1ace

Tunable fractionation of nucleic acids

Authors: Md. Salimullah, Sachiko Kato, Mitsuyoshi Murata, Chika Kawazu, Charles Plessy, Piero Carninci

Source: BioTechniques, Vol 47, Iss 6, Pp 1041-1043 (2009)

Subject Terms: selective purification, CTAB, nucleic acids, size fractionation, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://doaj.org/toc/0736-6205; https://doaj.org/toc/1940-9818

Access URL: https://doaj.org/article/eff7a382559d4a1d862da3846312fcff

High-throughput verification of transcriptional starting sites by Deep-RACE

Authors: Signe Olivarius, Charles Plessy, Piero Carninci

Source: BioTechniques, Vol 46, Iss 2, Pp 130-132 (2009)

Subject Terms: promoters, transcription start sites, high-throughput, RACE, short reads sequencing, Biology (General), QH301-705.5

File Description: electronic resource

Relation: https://doaj.org/toc/0736-6205; https://doaj.org/toc/1940-9818

Access URL: https://doaj.org/article/ba32cafb739743e9afb0291990297499

Multiplicity of 5' cap structures present on short RNAs.

Authors: Rehab F Abdelhamid, Charles Plessy, Yoshio Yamauchi, Masato Taoka, Michiel de Hoon, Thomas R Gingeras, Toshiaki Isobe, Piero Carninci

Source: PLoS ONE, Vol 9, Iss 7, p e102895 (2014)

Subject Terms: Medicine, Science

File Description: electronic resource

Relation: http://europepmc.org/articles/PMC4117478?pdf=render; https://doaj.org/toc/1932-6203

Access URL: https://doaj.org/article/34d8a2ea016846c0aa63aa2bfeca2c3e

A resource for transcriptomic analysis in the mouse brain.

Authors: Charles Plessy, Michela Fagiolini, Akiko Wagatsuma, Norihiro Harasawa, Takenobu Kuji, Atsuko Asaka-Oba, Yukari Kanzaki, Sayaka Fujishima, Kazunori Waki, Hiroyuki Nakahara, Takao K Hensch, Piero Carninci

Source: PLoS ONE, Vol 3, Iss 8, p e3012 (2008)

Subject Terms: Medicine, Science

File Description: electronic resource

Relation: https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/18714383/?tool=EBI; https://doaj.org/toc/1932-6203

Access URL: https://doaj.org/article/88f51d81d0d2450e98531e4824c660a6