Targeted dsRNA-mediated suppression of Phytophthora infestans infection via Avr3a

Authors: Hyeonmin Lee, Minsu Park, Yujin Kweon, Dowhan Lee, Chanseok Shin

Source: Applied Biological Chemistry, Vol 67, Iss 1, Pp 1-8 (2024)

Subject Terms: RNA interference, Phytophthora infestans, Avr3a, Double-stranded RNA, Agriculture (General), S1-972, Chemistry, QD1-999

File Description: electronic resource

Relation: https://doaj.org/toc/2468-0842

Access URL: https://doaj.org/article/9ebd0198e8da4ad7be4b552ab4914ead

Analysis of the global transcriptome and miRNAome associated with seed dormancy during seed maturation in rice (Oryza sativa L. cv. Nipponbare)

Authors: Minsu Park, Sang-Yoon Shin, Hongman Moon, Woochang Choi, Chanseok Shin

Source: BMC Plant Biology, Vol 24, Iss 1, Pp 1-15 (2024)

Subject Terms: Rice, Seed dormancy, Seed maturation, Plant hormone, Transcriptome, miRNAome, Botany, QK1-989

File Description: electronic resource

Relation: https://doaj.org/toc/1471-2229

Access URL: https://doaj.org/article/60846362a43f474aae141f6626890c5d

Development of multi-target dsRNAs targeting PcNLP gene family to suppress Phytophthora capsici infection in Nicotiana benthamiana

Authors: Minsu Park, Yujin Kweon, Jihyun Eom, Minsun Oh, Chanseok Shin

Source: Applied Biological Chemistry, Vol 66, Iss 1, Pp 1-8 (2023)

Subject Terms: RNA interference, Phytophthora capsici, NLP, Multi-target double-stranded RNA, Agriculture (General), S1-972, Chemistry, QD1-999

File Description: electronic resource

Relation: https://doaj.org/toc/2468-0842

Access URL: https://doaj.org/article/141fd1858a2e4aa59b366fe03f6ec872

Contribution of RdDM to the ecotype-specific differential methylation on conserved as well as highly variable regions between Arabidopsis ecotypes

Authors: Jaehoon Lee, Sang-Yoon Shin, Sang-Kyu Lee, Kyunghyuk Park, Haechan Gill, Youbong Hyun, Choongwon Jeong, Jong-Seong Jeon, Chanseok Shin, Yeonhee Choi

Source: BMC Genomics, Vol 24, Iss 1, Pp 1-18 (2023)

Subject Terms: Arabidopsis, Methylome, Transposable elements (TEs), Structural variation, RNA-directed DNA methylation (RdDM), Biotechnology, TP248.13-248.65, Genetics, QH426-470

File Description: electronic resource

Relation: https://doaj.org/toc/1471-2164

Access URL: https://doaj.org/article/f29e96a7ae69438798277f840cf67e61

Suppression of Phytophthora capsici using double-stranded RNAs targeting NLP effector genes in Nicotiana benthamiana

Authors: Minsu Park, Yujin Kweon, Dowhan Lee, Chanseok Shin

Source: Applied Biological Chemistry, Vol 66, Iss 1, Pp 1-7 (2023)

Subject Terms: Phytophthora capsici, Double-stranded RNA, Exogenous RNA application, RNA interference, Agriculture (General), S1-972, Chemistry, QD1-999

File Description: electronic resource

Relation: https://doaj.org/toc/2468-0842

Access URL: https://doaj.org/article/abcdb107f6ca49a0ae3bf65fc45e1cac

Distinct regulatory pathways contribute to dynamic CHH methylation patterns in transposable elements throughout Arabidopsis embryogenesis

Authors: Jaehoon Lee, Seunga Lee, Kyunghyuk Park, Sang-Yoon Shin, Jennifer M. Frost, Ping-Hung Hsieh, Chanseok Shin, Robert L. Fischer, Tzung-Fu Hsieh, Yeonhee Choi

Source: Frontiers in Plant Science, Vol 14 (2023)

Subject Terms: DNA methylation, CHH methylation, transposable elements, CMT2, RdDM, embryogenesis, Plant culture, SB1-1110

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fpls.2023.1204279/full; https://doaj.org/toc/1664-462X

Access URL: https://doaj.org/article/93dd3f5846c444129b6bcb663d2e6289

The regulatory impact of RNA-binding proteins on microRNA targeting

Authors: Sukjun Kim, Soyoung Kim, Hee Ryung Chang, Doyeon Kim, Junehee Park, Narae Son, Joori Park, Minhyuk Yoon, Gwangung Chae, Young-Kook Kim, V. Narry Kim, Yoon Ki Kim, Jin-Wu Nam, Chanseok Shin, Daehyun Baek

Source: Nature Communications, Vol 12, Iss 1, Pp 1-15 (2021)

Subject Terms: Science

File Description: electronic resource

Relation: https://doaj.org/toc/2041-1723

Access URL: https://doaj.org/article/fa80ba4bd3e24c5eae00608527853f85

Organ-specific transcriptome analysis reveals differential gene expression in different castes under natural conditions in Apis cerana

Authors: Igojo Kang, Woojin Kim, Jae Yun Lim, Yun Lee, Chanseok Shin

Source: Scientific Reports, Vol 11, Iss 1, Pp 1-12 (2021)

Subject Terms: Medicine, Science

File Description: electronic resource

Relation: https://doaj.org/toc/2045-2322

Access URL: https://doaj.org/article/2a28486f40ec46c3916a2c7db49bef41

Identification of Genes and MicroRNAs Affecting Pre-harvest Sprouting in Rice (Oryza sativa L.) by Transcriptome and Small RNAome Analyses

Authors: Minsu Park, Woochang Choi, Sang-Yoon Shin, Hongman Moon, Dowhan Lee, Yun-Shil Gho, Ki-Hong Jung, Jong-Seong Jeon, Chanseok Shin

Source: Frontiers in Plant Science, Vol 12 (2021)

Subject Terms: rice (Oryza sativa L.), pre-harvest sprouting (PHS), dormancy, stress responses, transcriptome, small RNAome, Plant culture, SB1-1110

File Description: electronic resource

Relation: https://www.frontiersin.org/articles/10.3389/fpls.2021.727302/full; https://doaj.org/toc/1664-462X

Access URL: https://doaj.org/article/6bbdfd4b7cae4fb38721b26062d4a68f

Transcriptomic analyses of rice (Oryza sativa) genes and non-coding RNAs under nitrogen starvation using multiple omics technologies

Authors: Sang-Yoon Shin, Jin Seo Jeong, Jae Yun Lim, Taewook Kim, June Hyun Park, Ju-Kon Kim, Chanseok Shin

Source: BMC Genomics, Vol 19, Iss 1, Pp 1-20 (2018)

Subject Terms: Long non-coding RNA, microRNA, NGS, Nitrogen starvation, Oryza sativa, Transcriptome, Biotechnology, TP248.13-248.65, Genetics, QH426-470

File Description: electronic resource

Relation: http://link.springer.com/article/10.1186/s12864-018-4897-1; https://doaj.org/toc/1471-2164

Access URL: https://doaj.org/article/b7c8bce3a19047d29b973d1979421030

Identification of target genes regulated by the Drosophila histone methyltransferase Eggless reveals a role of Decapentaplegic in apoptotic signaling

Authors: Igojo Kang, Yourim Choi, Sueun Jung, Jae Yun Lim, Dooyoung Lee, Sumeet Gupta, Woongjoon Moon, Chanseok Shin

Source: Scientific Reports, Vol 8, Iss 1, Pp 1-10 (2018)

Subject Terms: Medicine, Science

File Description: electronic resource

Relation: https://doaj.org/toc/2045-2322

Access URL: https://doaj.org/article/8f3ab14e92274215968513f9f7d8bd6c

MicroRNA844-Guided Downregulation of Cytidinephosphate Diacylglycerol Synthase3 (CDS3) mRNA Affects the Response of Arabidopsis thaliana to Bacteria and Fungi

Authors: Hwa Jung Lee, Young Ju Park, Kyung Jin Kwak, Donghyun Kim, June Hyun Park, Jae Yun Lim, Chanseok Shin, Kwang-Yeol Yang, Hunseung Kang

Source: Molecular Plant-Microbe Interactions, Vol 28, Iss 8, Pp 892-900 (2015)

Subject Terms: Microbiology, QR1-502, Botany, QK1-989

File Description: electronic resource

Relation: https://doaj.org/toc/0894-0282; https://doaj.org/toc/1943-7706

Access URL: https://doaj.org/article/03968dac4f1b48f7962e9cd302cd27af

Genome-wide exonic small interference RNA-mediated gene silencing regulates sexual reproduction in the homothallic fungus Fusarium graminearum.

Authors: Hokyoung Son, Ae Ran Park, Jae Yun Lim, Chanseok Shin, Yin-Won Lee

Source: PLoS Genetics, Vol 13, Iss 2, p e1006595 (2017)

Subject Terms: Genetics, QH426-470

File Description: electronic resource

Relation: https://journals.plos.org/plosgenetics/article/file?id=10.1371/journal.pgen.1006595&type=printable; https://doaj.org/toc/1553-7390; https://doaj.org/toc/1553-7404

Access URL: https://doaj.org/article/48ab84ef92f14491a307438c343e4bb3

Phosphorylation of CBP20 Links MicroRNA to Root Growth in the Ethylene Response.

Authors: Fan Zhang, Likai Wang, Jae Yun Lim, Taewook Kim, Youngjae Pyo, Sibum Sung, Chanseok Shin, Hong Qiao

Source: PLoS Genetics, Vol 12, Iss 11, p e1006437 (2016)

Subject Terms: Genetics, QH426-470

File Description: electronic resource

Relation: http://europepmc.org/articles/PMC5147770?pdf=render; https://doaj.org/toc/1553-7390; https://doaj.org/toc/1553-7404

Access URL: https://doaj.org/article/263276068fd642ceb221c650c28acb51

Survey of the Applications of NGS to Whole-Genome Sequencing and Expression Profiling

Authors: Jong-Sung Lim, Beom-Soon Choi, Jeong-Soo Lee, Chanseok Shin, Tae-Jin Yang, Jae-Sung Rhee, Jae-Seong Lee, Ik-Young Choi

Source: Genomics & Informatics, Vol 10, Iss 1, Pp 1-8 (2012)

Subject Terms: assembly, expression profiling, multiplatform, NGS, resequencing, whole genome, Genetics, QH426-470

File Description: electronic resource

Relation: http://genominfo.org/upload/pdf/gni-10-1.pdf; https://doaj.org/toc/1598-866X; https://doaj.org/toc/2234-0742

Access URL: https://doaj.org/article/7318ed03a6bb419e9836c35476dfdecc

An Amphiphilic Peptide Induces Apoptosis Through the miR29b-p53 Pathway in Cancer Cells

Authors: Soyoung Kim, Jung Hyun Lee, Igojo Kang, Soonsil Hyun, Jaehoon Yu, Chanseok Shin

Source: Molecular Therapy: Nucleic Acids, Vol 5, Iss C (2016)

Subject Terms: apoptosis, cancer therapy, Dicer processing, miR29b-p53 pathway, synthesized amphiphilic peptide, Therapeutics. Pharmacology, RM1-950

File Description: electronic resource

Relation: http://www.sciencedirect.com/science/article/pii/S2162253117300598; https://doaj.org/toc/2162-2531

Access URL: https://doaj.org/article/b1191a427a924b26a55e4de5427f1176

The hot pepper (Capsicum annuum) microRNA transcriptome reveals novel and conserved targets: a foundation for understanding MicroRNA functional roles in hot pepper.

Authors: Dong-Gyu Hwang, June Hyun Park, Jae Yun Lim, Donghyun Kim, Yourim Choi, Soyoung Kim, Gregory Reeves, Seon-In Yeom, Jeong-Soo Lee, Minkyu Park, Seungill Kim, Ik-Young Choi, Doil Choi, Chanseok Shin

Source: PLoS ONE, Vol 8, Iss 5, p e64238 (2013)

Subject Terms: Medicine, Science

File Description: electronic resource

Relation: http://europepmc.org/articles/PMC3667847?pdf=render; https://doaj.org/toc/1932-6203

Access URL: https://doaj.org/article/1e7db1fb7f1744bcbcb5e8bfd4b5e75d

The role of plant small RNAs in NB-LRR regulation.

Authors: June Hyun Park¹, Chanseok Shin² cshin@snu.ac.kr

Source: Briefings in Functional Genomics. Jul2015, Vol. 14 Issue 4, p268-274. 7p.

Subject Terms: *GENETIC regulation, *PATHOGENIC microorganisms, *METABOLISM, *PLANT development, *NUCLEOTIDE sequence, *GENETICS

The impact of microRNAs on protein output.

Authors: Baek, Daehyun, Villén, Judit, Chanseok Shin, Camargo, Fernando D., Gygi, Steven P., Bartel, David P.

Source: Nature. 9/4/2008, Vol. 455 Issue 7209, p64-71. 8p. 1 Chart, 4 Graphs.

Subjects: GENES, MOLECULAR genetics, HEREDITY, RNA, PROTEINS, BIOMOLECULES, SPECTROMETRY, DNA, PROTEIN genetics, ACTIN

Non-canonical targets destabilize microRNAs in human Argonautes.

Authors: Park, June Hyun, Sang-Yoon Shin, Chanseok Shin

Source: Nucleic Acids Research; Feb2017, Vol. 45 Issue 4, p1569-1583, 15p, 8 Graphs